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1IKA
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BU of 1ika by Molmil
STRUCTURE OF ISOCITRATE DEHYDROGENASE WITH ALPHA-KETOGLUTARATE AT 2.7 ANGSTROMS RESOLUTION: CONFORMATIONAL CHANGES INDUCED BY DECARBOXYLATION OF ISOCITRATE
Descriptor: 2-OXOGLUTARIC ACID, CALCIUM ION, ISOCITRATE DEHYDROGENASE
Authors:Stoddard, B.L, Koshland Junior, D.E.
Deposit date:1993-06-15
Release date:1994-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of isocitrate dehydrogenase with alpha-ketoglutarate at 2.7-A resolution: conformational changes induced by decarboxylation of isocitrate.
Biochemistry, 32, 1993
1IDC
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BU of 1idc by Molmil
ISOCITRATE DEHYDROGENASE FROM E.COLI (MUTANT K230M), STEADY-STATE INTERMEDIATE COMPLEX DETERMINED BY LAUE CRYSTALLOGRAPHY
Descriptor: 2-OXALOSUCCINIC ACID, ISOCITRATE DEHYDROGENASE, MAGNESIUM ION
Authors:Bolduc, J.M, Dyer, D.H, Scott, W.G, Singer, P, Sweet, R.M, Koshland Junior, D.E, Stoddard, B.L.
Deposit date:1995-01-18
Release date:1996-03-08
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutagenesis and Laue structures of enzyme intermediates: isocitrate dehydrogenase.
Science, 268, 1995
1IDF
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BU of 1idf by Molmil
ISOCITRATE DEHYDROGENASE K230M MUTANT APO ENZYME
Descriptor: ISOCITRATE DEHYDROGENASE
Authors:Bolduc, J.M, Dyer, D.H, Scott, W.G, Singer, P, Sweet, R.M, Koshland Junior, D.E, Stoddard, B.L.
Deposit date:1995-01-18
Release date:1996-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mutagenesis and Laue structures of enzyme intermediates: isocitrate dehydrogenase.
Science, 268, 1995
3TY4
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BU of 3ty4 by Molmil
Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe
Descriptor: GLYCEROL, Probable homoisocitrate dehydrogenase
Authors:Bulfer, S.L, Hendershot, J.M, Trievel, R.C.
Deposit date:2011-09-23
Release date:2011-11-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe.
Proteins, 80, 2012
3UDO
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BU of 3udo by Molmil
Crystal structure of putative isopropylamlate dehydrogenase from Campylobacter jejuni
Descriptor: 1,2-ETHANEDIOL, 3-isopropylmalate dehydrogenase, SULFATE ION
Authors:Tkaczuk, K.L, Chruszcz, M, Blus, B.J, Onopriyenko, O, Grimshaw, S, Savchenko, A, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-10-28
Release date:2011-11-09
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of putative isopropylamlate dehydrogenase from Campylobacter jejuni
To be Published
3US8
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BU of 3us8 by Molmil
Crystal Structure of an isocitrate dehydrogenase from Sinorhizobium meliloti 1021
Descriptor: Isocitrate dehydrogenase [NADP], SULFATE ION
Authors:Kumaran, D, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, LaFleur, J, Seidel, R, Villigas, G, Zencheck, W, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2011-11-23
Release date:2011-12-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of an isocitrate dehydrogenase from Sinorhizobium meliloti 1021
To be Published
3UDU
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BU of 3udu by Molmil
Crystal structure of putative 3-isopropylmalate dehydrogenase from Campylobacter jejuni
Descriptor: 1,2-ETHANEDIOL, 3-isopropylmalate dehydrogenase, CHLORIDE ION
Authors:Tkaczuk, K.L, Chruszcz, M, Grimshaw, S, Onopriyenko, O, Savchenko, A, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2011-10-28
Release date:2011-11-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of putative 3-isopropylmalate dehydrogenase from Campylobacter jejuni
To be Published
3VL6
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BU of 3vl6 by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 580 MPa
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CALCIUM ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-11-29
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase
Acta Crystallogr.,Sect.D, 68, 2012
3VKZ
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BU of 3vkz by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at atmospheric pressure
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CALCIUM ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-11-28
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase
Acta Crystallogr.,Sect.D, 68, 2012
3TY3
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BU of 3ty3 by Molmil
Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe bound to glycyl-glycyl-glycine
Descriptor: GLYCEROL, Probable homoisocitrate dehydrogenase, glycylglycylglycine
Authors:Bulfer, S.L, Hendershot, J.M, Trievel, R.C.
Deposit date:2011-09-23
Release date:2011-11-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of homoisocitrate dehydrogenase from Schizosaccharomyces pombe.
Proteins, 80, 2012
3VL4
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BU of 3vl4 by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 410 MPa
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CALCIUM ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-11-29
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase
Acta Crystallogr.,Sect.D, 68, 2012
3VL7
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BU of 3vl7 by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 650 MPa
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CALCIUM ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-11-29
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase
Acta Crystallogr.,Sect.D, 68, 2012
3VMK
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BU of 3vmk by Molmil
3-isopropylmalate dehydrogenase from Shewanella benthica DB21 MT-2
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CHLORIDE ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-12-13
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural analysis of 3-isopropylmalate dehydrogenase from the obligate piezophile Shewanella benthica DB21MT-2 and the nonpiezophile Shewanella oneidensis MR-1
Acta Crystallogr.,Sect.F, 68, 2012
3VMJ
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BU of 3vmj by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CHLORIDE ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-12-13
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural analysis of 3-isopropylmalate dehydrogenase from the obligate piezophile Shewanella benthica DB21MT-2 and the nonpiezophile Shewanella oneidensis MR-1
Acta Crystallogr.,Sect.F, 68, 2012
3VL3
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BU of 3vl3 by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 340 MPa
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CALCIUM ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-11-29
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase
Acta Crystallogr.,Sect.D, 68, 2012
3VL2
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BU of 3vl2 by Molmil
3-isopropylmalate dehydrogenase from Shewanella oneidensis MR-1 at 160 MPa
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CALCIUM ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-11-29
Release date:2012-02-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase
Acta Crystallogr.,Sect.D, 68, 2012
3VML
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BU of 3vml by Molmil
Chimera 3-isopropylmalate dehydrogenase between Shewanella oneidensis MR-1 (O) and Shewanella benthica DB21 MT-2 (M) from N-terminal: 20% O middle 70% M residual 10% O
Descriptor: 3-ISOPROPYLMALIC ACID, 3-isopropylmalate dehydrogenase, CHLORIDE ION, ...
Authors:Nagae, T, Watanabe, N.
Deposit date:2011-12-13
Release date:2012-12-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structure analysis of chimeric 3-isopropylmalate dehydrogenase between the obligate piezophile Shewanella benthica DB21MT-2 and the nonpiezophile Shewanella oneidensis MR-1
To be Published
5GRE
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BU of 5gre by Molmil
Crystal structure of the alpha gamma heterodimer of human IDH3 in complex with Mg(2+), citrate and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CITRIC ACID, Isocitrate dehydrogenase [NAD] subunit alpha, ...
Authors:Ma, T, Peng, Y, Ding, J.
Deposit date:2016-08-11
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Molecular mechanism of the allosteric regulation of the alpha gamma heterodimer of human NAD-dependent isocitrate dehydrogenase.
Sci Rep, 7, 2017
5H3E
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BU of 5h3e by Molmil
Crystal structure of mouse isocitrate dehydrogenases 2 K256Q mutant complexed with isocitrate
Descriptor: ISOCITRIC ACID, Isocitrate dehydrogenase [NADP], mitochondrial, ...
Authors:Xu, Y, Liu, L, Miyakawa, T, Nakamura, A, Tanokura, M.
Deposit date:2016-10-23
Release date:2017-08-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics
Sci Rep, 7, 2017
5GRH
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BU of 5grh by Molmil
Crystal structure of the alpha gamma heterodimer of human IDH3 in complex with Mg(2+)
Descriptor: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial, Isocitrate dehydrogenase [NAD] subunit gamma, ...
Authors:Ma, T, Peng, Y.
Deposit date:2016-08-11
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular mechanism of the allosteric regulation of the alpha gamma heterodimer of human NAD-dependent isocitrate dehydrogenase.
Sci Rep, 7, 2017
5H3F
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BU of 5h3f by Molmil
Crystal structure of mouse isocitrate dehydrogenases 2 complexed with isocitrate
Descriptor: ISOCITRIC ACID, Isocitrate dehydrogenase [NADP], mitochondrial, ...
Authors:Xu, Y, Liu, L, Miyakawa, T, Nakamura, A, Tanokura, M.
Deposit date:2016-10-23
Release date:2017-08-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics
Sci Rep, 7, 2017
5GRI
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BU of 5gri by Molmil
Crystal structure of the alpha gamma heterodimer of human IDH3 in complex with Mg(2+) and citrate
Descriptor: CITRIC ACID, Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial, ...
Authors:Ma, T, Peng, Y, Ding, J.
Deposit date:2016-08-11
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Molecular mechanism of the allosteric regulation of the alpha gamma heterodimer of human NAD-dependent isocitrate dehydrogenase.
Sci Rep, 7, 2017
5HN6
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BU of 5hn6 by Molmil
Crystal structure of beta-decarboxylating dehydrogenase (TK0280) from Thermococcus kodakarensis complexed with Mn and 3-isopropylmalate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-ISOPROPYLMALIC ACID, Homoisocitrate dehydrogenase, ...
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2016-01-18
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensis
Biochem. J., 474, 2017
5HN4
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BU of 5hn4 by Molmil
Crystal structure of beta-decarboxylating dehydrogenase (TK0280) from Thermococcus kodakarensis complexed with Mn and homoisocitrate
Descriptor: (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylic acid, Homoisocitrate dehydrogenase, IMIDAZOLE, ...
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2016-01-18
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensis
Biochem. J., 474, 2017
5HN5
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BU of 5hn5 by Molmil
Crystal structure of beta-decarboxylating dehydrogenase (TK0280) from Thermococcus kodakarensis complexed with Mn and isocitrate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Homoisocitrate dehydrogenase, ISOCITRIC ACID, ...
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2016-01-18
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensis
Biochem. J., 474, 2017

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