PDB: 909 resultsInfo pagesStatus searchChemie searchBIRD

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7ZNJ	Structure of an ALYREF-exon junction complex hexamer Descriptor: Eukaryotic initiation factor 4A-III, N-terminally processed, MAGNESIUM ION, ... Authors: Pacheco-Fiallos, F.B, Vorlaender, M.K, Plaschka, C. Deposit date: 2022-04-21 Release date: 2023-04-12 Last modified: 2023-05-24 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: mRNA recognition and packaging by the human transcription-export complex. Nature, 616, 2023
8E5T	Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L13-A, ... Authors: Sanghai, Z.A, Piwowarczyk, R, Vanden Broeck, A, Klinge, S. Deposit date: 2022-08-22 Release date: 2023-04-12 Last modified: 2023-05-31 Method: ELECTRON MICROSCOPY (4 Å) Cite: A co-transcriptional ribosome assembly checkpoint controls nascent large ribosomal subunit maturation. Nat.Struct.Mol.Biol., 30, 2023
7ZAP	Solution structure of RBM39 RRM1 bound to U1 snRNA stem loop 3 Descriptor: RNA-binding protein 39, U1 snRNA SL3 Authors: Campagne, S, Allain, F.H. Deposit date: 2022-03-22 Release date: 2023-03-29 Last modified: 2023-09-20 Method: SOLUTION NMR Cite: Molecular basis of RNA-binding and autoregulation by the cancer-associated splicing factor RBM39. Nat Commun, 14, 2023
7UOO	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 25S rRNA, 5.8S rRNA, ... Authors: Sekulski, K, Cruz, V.E, Weirich, C.S, Erzberger, J.P. Deposit date: 2022-04-13 Release date: 2023-03-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.34 Å) Cite: rRNA methylation by Spb1 regulates the GTPase activity of Nog2 during 60S ribosomal subunit assembly. Nat Commun, 14, 2023
7UQB	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4 Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 25S rRNA, 5.8S rRNA, ... Authors: Sekulski, K, Cruz, V.E, Weirich, C.S, Erzberger, J.P. Deposit date: 2022-04-19 Release date: 2023-03-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.43 Å) Cite: rRNA methylation by Spb1 regulates the GTPase activity of Nog2 during 60S ribosomal subunit assembly. Nat Commun, 14, 2023
7UQZ	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 25S rRNA, 5.8S rRNA, ... Authors: Sekulski, K, Cruz, V.E, Weirich, C.S, Erzberger, J.P. Deposit date: 2022-04-20 Release date: 2023-03-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.44 Å) Cite: rRNA methylation by Spb1 regulates the GTPase activity of Nog2 during 60S ribosomal subunit assembly. Nat Commun, 14, 2023
7V08	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 25S rRNA, 5.8S rRNA, ... Authors: Sekulski, K, Cruz, V.E, Weirich, C.S, Erzberger, J.P. Deposit date: 2022-05-10 Release date: 2023-03-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.36 Å) Cite: rRNA methylation by Spb1 regulates the GTPase activity of Nog2 during 60S ribosomal subunit assembly. Nat Commun, 14, 2023
7YCX	The structure of INTAC-PEC complex Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1,DNA-directed RNA polymerase II subunit RPB1, ... Authors: Zheng, H, Jin, Q, Wang, X, Qi, Y, Liu, W, Ren, Y, Zhao, D, Chen, F.X, Cheng, J, Chen, X, Xu, Y. Deposit date: 2022-07-02 Release date: 2023-03-15 Last modified: 2023-09-27 Method: ELECTRON MICROSCOPY (4.18 Å) Cite: Structural basis of INTAC-regulated transcription. Protein Cell, 14, 2023
8HK1	The cryo-EM structure of human pre-17S U2 snRNP Descriptor: ATP-dependent RNA helicase DDX42, HIV Tat-specific factor 1, PHD finger-like domain-containing protein 5A, ... Authors: Zhang, X, Zhan, X, Shi, Y. Deposit date: 2022-11-24 Release date: 2023-03-08 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Mechanisms of the RNA helicases DDX42 and DDX46 in human U2 snRNP assembly. Nat Commun, 14, 2023
7Q33	Solution structure of RBM39 RRM2 bound to 5'-AGCUUUG-3 Descriptor: RNA (5'-R(*AP*GP*CP*UP*UP*UP*G)-3'), RNA-binding protein 39 Authors: Campagne, S, Allain, F.H. Deposit date: 2021-10-26 Release date: 2023-02-08 Last modified: 2023-09-20 Method: SOLUTION NMR Cite: Molecular basis of RNA-binding and autoregulation by the cancer-associated splicing factor RBM39. Nat Commun, 14, 2023
8GXC	Crystal structure of NAD+ -II riboswitch in complex with NMN Descriptor: 61-mer RNA, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, MAGNESIUM ION, ... Authors: Xu, X.C, Ren, A.M. Deposit date: 2022-09-19 Release date: 2023-01-18 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure-based investigations of the NAD+-II riboswitch. Nucleic Acids Res., 51, 2023
8GXB	Crystal structure of NAD+ -II riboswitch in complex with NAD+ Descriptor: MAGNESIUM ION, NAD+ II riboswitch, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... Authors: Xu, X.C, Ren, A.M. Deposit date: 2022-09-19 Release date: 2023-01-18 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structure-based investigations of the NAD+-II riboswitch. Nucleic Acids Res., 51, 2023
7ZIR	Cryo-EM structure of hnRNPDL amyloid fibrils Descriptor: Heterogeneous nuclear ribonucleoprotein D-like Authors: Garcia-Pardo, J, Chaves-Sanjuan, A, Bartolome-Nafria, A, Gil-Garcia, M, Visentin, C, Bolognesi, M, Ricagno, S, Ventura, S. Deposit date: 2022-04-08 Release date: 2022-12-28 Last modified: 2023-12-13 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Cryo-EM structure of hnRNPDL-2 fibrils, a functional amyloid associated with limb-girdle muscular dystrophy D3. Nat Commun, 14, 2023
7WEZ	Crystal structure of RRM domain of Cyclophilin 33-like protein of Plasmodium falciparum Descriptor: MAGNESIUM ION, RNA-binding protein, putative Authors: Verma, G, Bhavesh, N.S. Deposit date: 2021-12-24 Release date: 2022-12-28 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of RRM domain of Cyclophilin 33-like protein of Plasmodium falciparum To Be Published
7QDE	NMR structure of Npl3 RRM12 bound to the AUCCAGUGGAA RNA Descriptor: Nucleolar protein 3, RNA (5'-R(*AP*UP*CP*CP*AP*GP*UP*GP*GP*AP*A)-3') Authors: Allain, F.H.-T, Clery, A, Moursy, A. Deposit date: 2021-11-26 Release date: 2022-12-21 Last modified: 2024-01-10 Method: SOLUTION NMR Cite: RNA recognition by Npl3p reveals U2 snRNA-binding compatible with a chaperone role during splicing. Nat Commun, 14, 2023
7U0H	State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model Descriptor: 25S rRNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, 5.8S rRNA, ... Authors: Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P. Deposit date: 2022-02-18 Release date: 2022-12-14 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. Nat.Struct.Mol.Biol., 29, 2022
7ZHR	Complex structure of drosophila Unr CSD789 and pAbp RRM3 Descriptor: Polyadenylate-binding protein, Upstream of N-ras, isoform A Authors: Hollmann, N.M, Jagtap, P.K.A, Hennig, J. Deposit date: 2022-04-07 Release date: 2022-12-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Upstream of N-Ras C-terminal cold shock domains mediate poly(A) specificity in a novel RNA recognition mode and bind poly(A) binding protein. Nucleic Acids Res., 51, 2023
8EUP	Ytm1 associated 60S nascent ribosome State 1A Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-19 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EV3	Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-19 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ESQ	Ytm1 associated nascent 60S ribosome State 2 Descriptor: 25S rRNA (cytosine-C(5))-methyltransferase nop2, 60S ribosomal protein L13, 60S ribosomal protein L14, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-14 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETI	Fkbp39 associated 60S nascent ribosome State 1 Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EUY	Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-19 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETH	Ytm1 associated 60S nascent ribosome State 1B Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETG	Fkbp39 associated 60S nascent ribosome State 3 Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ESR	Ytm1 associated nascent 60S ribosome (-fkbp39) State 2 Descriptor: 25S rRNA (cytosine-C(5))-methyltransferase nop2, 60S ribosomal protein L13, 60S ribosomal protein L14, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-14 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022

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