Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6MLT
DownloadVisualize
BU of 6mlt by Molmil
Crystal structure of the V. cholerae biofilm matrix protein Bap1
Descriptor: CALCIUM ION, CITRATE ANION, GLYCEROL, ...
Authors:Kaus, K, Biester, A, Chupp, E, Lu, K, Vidsudharomn, C, Olson, R.
Deposit date:2018-09-28
Release date:2019-08-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The 1.9 angstrom crystal structure of the extracellular matrix protein Bap1 fromVibrio choleraeprovides insights into bacterial biofilm adhesion.
J.Biol.Chem., 294, 2019
7CFJ
DownloadVisualize
BU of 7cfj by Molmil
Crystal structure of housekeeping sortase SrtA from Lactobacillus rhamnosus GG
Descriptor: Class A sortase
Authors:Pratap, S, Megta, A.K, Krishnan, V.
Deposit date:2020-06-25
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structure of housekeeping sortase SrtA from Lactobacillus rhamnosus GG
To Be Published
6GDQ
DownloadVisualize
BU of 6gdq by Molmil
Fragment-based discovery of a highly potent, orally bioavailable inhibitor which modulates the phosphorylation and catalytic activity of ERK1/2
Descriptor: 4-[5-chloranyl-2-(propan-2-ylamino)pyridin-4-yl]-~{N}-[(1~{S})-1-(3-chlorophenyl)-2-oxidanyl-ethyl]-1~{H}-pyrrole-2-carboxamide, DIMETHYL SULFOXIDE, Mitogen-activated protein kinase 1, ...
Authors:O'Reilly, M.
Deposit date:2018-04-24
Release date:2018-05-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Fragment-Based Discovery of a Potent, Orally Bioavailable Inhibitor That Modulates the Phosphorylation and Catalytic Activity of ERK1/2.
J. Med. Chem., 61, 2018
5VI4
DownloadVisualize
BU of 5vi4 by Molmil
IL-33/ST2/IL-1RAcP ternary complex structure
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-1 receptor accessory protein, Interleukin-1 receptor-like 1, ...
Authors:Guenther, S, Sundberg, E.J.
Deposit date:2017-04-13
Release date:2017-09-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.792 Å)
Cite:IL-1 Family Cytokines Use Distinct Molecular Mechanisms to Signal through Their Shared Co-receptor.
Immunity, 47, 2017
6URW
DownloadVisualize
BU of 6urw by Molmil
Crystal structure of ricin A chain in complex with inhibitor 4-(2-thienylmethyl)benzoic acid
Descriptor: 1,2-ETHANEDIOL, 4-[(thiophen-2-yl)methyl]benzoic acid, DIMETHYL SULFOXIDE, ...
Authors:Harijan, R.K, Li, X.P, Bonanno, J.B, Almo, S.C, Tumer, N.E, Schramm, V.L.
Deposit date:2019-10-24
Release date:2020-06-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Small Molecule Inhibitors Targeting the Interaction of Ricin Toxin A Subunit with Ribosomes.
Acs Infect Dis., 6, 2020
7CG9
DownloadVisualize
BU of 7cg9 by Molmil
Crystal structure of pilin-specific sortase SrtC1 from Lactobacillus rhamnosus GG
Descriptor: Class C sortase, SULFATE ION
Authors:Megta, A.K, Pratap, S, Krishnan, V.
Deposit date:2020-06-30
Release date:2022-03-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of pilin-specific sortase SrtC1 from Lactobacillus rhamnosus GG
To Be Published
6PNG
DownloadVisualize
BU of 6png by Molmil
Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain in complex with 7-(3-(Aminomethyl)-4-propoxyphenyl)-4-methylquinolin-2-amine
Descriptor: 7-[3-(aminomethyl)-4-propoxyphenyl]-4-methylquinolin-2-amine, Nitric oxide synthase, brain, ...
Authors:Li, H, Poulos, T.L.
Deposit date:2019-07-02
Release date:2020-04-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.775 Å)
Cite:First Contact: 7-Phenyl-2-Aminoquinolines, Potent and Selective Neuronal Nitric Oxide Synthase Inhibitors That Target an Isoform-Specific Aspartate.
J.Med.Chem., 63, 2020
6GDV
DownloadVisualize
BU of 6gdv by Molmil
Structure of CutA from Synechococcus elongatus PCC7942 complexed with Bis-Tris molecule
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Periplasmic divalent cation tolerance protein
Authors:Tremino, L, Rubio, V.
Deposit date:2018-04-24
Release date:2019-05-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 2020
6US0
DownloadVisualize
BU of 6us0 by Molmil
Barrier-to-autointegration factor soaked in R,S,R-bisfuranol (RSR): 1 of 14 in MSCS set
Descriptor: Barrier-to-autointegration factor, ETHANOL
Authors:Agarwal, S, Smith, M, De La Rosa, I, Kliment, A.V, Swartz, P, Segura-Totten, M, Mattos, C.
Deposit date:2019-10-24
Release date:2020-10-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.653 Å)
Cite:Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor.
Acta Crystallogr D Struct Biol, 76, 2020
6US8
DownloadVisualize
BU of 6us8 by Molmil
Influenza A M2 proton channel wild type TM domain bound to S-rimantadine
Descriptor: (1S)-1-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]decan-1-yl]ethan-1-amine, CHLORIDE ION, Matrix protein 2
Authors:Thomaston, J.L, DeGrado, W.F.
Deposit date:2019-10-25
Release date:2020-10-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Rimantadine Binds to and Inhibits the Influenza A M2 Proton Channel without Enantiomeric Specificity.
Biochemistry, 2021
8OQO
DownloadVisualize
BU of 8oqo by Molmil
Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with Fragment-M-49
Descriptor: GLYCEROL, Probable fatty oxidation protein FadB, Putative acyltransferase Rv0859, ...
Authors:Dalwani, S, Wierenga, R.K, Venkatesan, R.
Deposit date:2023-04-12
Release date:2024-01-24
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic fragment-binding studies of the Mycobacterium tuberculosis trifunctional enzyme suggest binding pockets for the tails of the acyl-CoA substrates at its active sites and a potential substrate-channeling path between them.
Acta Crystallogr D Struct Biol, 80, 2024
6PO9
DownloadVisualize
BU of 6po9 by Molmil
Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain in complex with 7-(3-(Aminomethyl)-4-(pyridin-2-ylmethoxy)phenyl)-4-methylquinolin-2-amine
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, 7-{3-(aminomethyl)-4-[(pyridin-2-yl)methoxy]phenyl}-4-methylquinolin-2-amine, GLYCEROL, ...
Authors:Li, H, Poulos, T.L.
Deposit date:2019-07-03
Release date:2020-04-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.808 Å)
Cite:First Contact: 7-Phenyl-2-Aminoquinolines, Potent and Selective Neuronal Nitric Oxide Synthase Inhibitors That Target an Isoform-Specific Aspartate.
J.Med.Chem., 63, 2020
5VJP
DownloadVisualize
BU of 5vjp by Molmil
Crystal Structure of Adenine Phosphoribosyltransferase from Saccharomyces cerevisiae Complexed with L-2,5-Dideoxy-2,5-Imino-Altritol 1,6-Bisphosphate (L-DIAB) and Adenine
Descriptor: 1,2-ETHANEDIOL, ADENINE, Adenine phosphoribosyltransferase 1, ...
Authors:Harijan, R.K, Ducati, R.G, Bonanno, J.B, Almo, S.C, Schramm, V.L.
Deposit date:2017-04-19
Release date:2017-12-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Synthesis of bis-Phosphate Iminoaltritol Enantiomers and Structural Characterization with Adenine Phosphoribosyltransferase.
ACS Chem. Biol., 13, 2018
6G27
DownloadVisualize
BU of 6g27 by Molmil
X-ray structure of NSD3-PWWP1 in complex with compound 5
Descriptor: 5-methyl-6-phenyl-2-piperidin-4-yl-pyridazin-3-one, Histone-lysine N-methyltransferase NSD3
Authors:Boettcher, J, Muellauer, B.J, Weiss-Puxbaum, A, Zoephel, A.
Deposit date:2018-03-22
Release date:2019-06-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3.
Nat.Chem.Biol., 15, 2019
8OMK
DownloadVisualize
BU of 8omk by Molmil
hKHK-C in complex with ADP & fructose 1-phosphate
Descriptor: 1-O-phosphono-beta-D-fructofuranose, ADENOSINE-5'-DIPHOSPHATE, Ketohexokinase, ...
Authors:Ebenhoch, R, Pautsch, A.
Deposit date:2023-03-31
Release date:2024-01-10
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Discovery of BI-9787, a potent zwitterionic ketohexokinase inhibitor with oral bioavailability.
Bioorg.Med.Chem.Lett., 112, 2024
6UTE
DownloadVisualize
BU of 6ute by Molmil
Crystal structure of Z032 Fab in complex with WNV EDIII
Descriptor: Envelope domain III, GLYCEROL, Z032 Fab heavy chain, ...
Authors:Esswein, S.R, Gristick, H.B, Keeffe, J.R, Bjorkman, P.J.
Deposit date:2019-10-29
Release date:2020-04-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for Zika envelope domain III recognition by a germline version of a recurrent neutralizing antibody.
Proc.Natl.Acad.Sci.USA, 117, 2020
6YQ6
DownloadVisualize
BU of 6yq6 by Molmil
Promiscuous Reductase LugOII Catalyzes Keto-reduction at C1 during Lugdunomycin Biosynthesis
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Monooxygenase, ...
Authors:Xiao, X, Elsayed, S.S, Wu, C, van der Heul, H, Prota, A, Huang, J, Guo, R, Abrahams, J.P, van Wezel, G.P.
Deposit date:2020-04-16
Release date:2020-09-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Functional and Structural Insights into a Novel Promiscuous Ketoreductase of the Lugdunomycin Biosynthetic Pathway.
Acs Chem.Biol., 15, 2020
6VH0
DownloadVisualize
BU of 6vh0 by Molmil
1.95 A resolution structure of MERS 3CL protease in complex with inhibitor 6g
Descriptor: N~2~-{[(5-ethyl-1,3-dioxan-5-yl)oxy]carbonyl}-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide, Orf1a protein
Authors:Lovell, S, Battaile, K.P, Kashipathy, M.M, Rathnayake, A.D, Zheng, J, Kim, Y, Nguyen, H.N, Chang, K.O, Groutas, W.C.
Deposit date:2020-01-09
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:3C-like protease inhibitors block coronavirus replication in vitro and improve survival in MERS-CoV-infected mice.
Sci Transl Med, 12, 2020
8OE6
DownloadVisualize
BU of 8oe6 by Molmil
Structure of hyperstable haloalkane dehalogenase variant DhaA231
Descriptor: CHLORIDE ION, MAGNESIUM ION, Structure of hyperstable haloalkane dehalogenase variant DhaA231
Authors:Marek, M.
Deposit date:2023-03-10
Release date:2024-01-17
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Advancing Enzyme's Stability and Catalytic Efficiency through Synergy of Force-Field Calculations, Evolutionary Analysis, and Machine Learning.
Acs Catalysis, 13, 2023
6G4Y
DownloadVisualize
BU of 6g4y by Molmil
Crystal structure of murine NF-kappaB inducing kinase (NIK) in complex with compound 1a
Descriptor: 10-[2-[(3~{R})-1-methyl-3-oxidanyl-2-oxidanylidene-pyrrolidin-3-yl]ethynyl]-~{N}3-(oxan-4-yl)-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepine-2,3-dicarboxamide, Mitogen-activated protein kinase kinase kinase 14, SULFATE ION
Authors:Hole, A.J, Hymowitz, S.G, McEwan, P.A.
Deposit date:2018-03-28
Release date:2018-07-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Scaffold-Hopping Approach To Discover Potent, Selective, and Efficacious Inhibitors of NF-kappa B Inducing Kinase.
J. Med. Chem., 61, 2018
5KR1
DownloadVisualize
BU of 5kr1 by Molmil
Protease PR5-DRV
Descriptor: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, Protease PR5-DRV
Authors:Liu, Z, Poole, K.M, Mahon, B.P, McKenna, R, Fanucci, G.E.
Deposit date:2016-07-06
Release date:2016-09-21
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Effects of Hinge-region Natural Polymorphisms on Human Immunodeficiency Virus-Type 1 Protease Structure, Dynamics, and Drug Pressure Evolution.
J.Biol.Chem., 291, 2016
5HA7
DownloadVisualize
BU of 5ha7 by Molmil
Human Aldose Reductase in Complex with NADP+ and WY14643 in Space Group P212121
Descriptor: 2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID, Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Sawaya, M.R, Cascio, D, Balendiran, G.K.
Deposit date:2015-12-30
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Characterization of WY 14,643 and its Complex with Aldose Reductase.
Sci Rep, 6, 2016
6FOA
DownloadVisualize
BU of 6foa by Molmil
Human Xylosyltransferase 1 apo structure
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, SODIUM ION, ...
Authors:Briggs, D.C, Hohenester, E.
Deposit date:2018-02-06
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.869 Å)
Cite:Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1.
Structure, 26, 2018
8OFK
DownloadVisualize
BU of 8ofk by Molmil
Crystal structure of the cysteine-rich Gallus gallus urate oxidase in complex with the 8-azaxanthine inhibitor under reducing conditions (space group C 2 2 21)
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, CHLORIDE ION, ...
Authors:Di Palma, M, Chegkazi, M, Bui, S, Mori, G, Percudani, R, Steiner, R.A.
Deposit date:2023-03-15
Release date:2024-01-17
Method:X-RAY DIFFRACTION (1.713 Å)
Cite:Cysteine Enrichment Mediates Co-Option of Uricase in Reptilian Skin and Transition to Uricotelism.
Mol.Biol.Evol., 40, 2023
6FOP
DownloadVisualize
BU of 6fop by Molmil
Glycoside hydrolase family 81 from Clostridium thermocellum (CtLam81A), Mutant E515A
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Correia, M.A.S.C, Carvalho, A.L.
Deposit date:2018-02-08
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Novel insights into the degradation of beta-1,3-glucans by the cellulosome of Clostridium thermocellum revealed by structure and function studies of a family 81 glycoside hydrolase.
Int.J.Biol.Macromol., 117, 2018

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon