Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DWD
DownloadVisualize
BU of 6dwd by Molmil
SAMHD1 Bound to Clofarabine-TP in the Catalytic Pocket and Allosteric Pocket
Descriptor: 3,3',3''-phosphanetriyltripropanoic acid, 9-{2-deoxy-2-fluoro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}-2-me thyl-9H-purin-6-amine, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ...
Authors:Knecht, K.M, Buzovetsky, O, Schneider, C, Thomas, D, Srikanth, V, Kaderali, L, Tofoleanu, F, Reiss, K, Ferreiros, N, Geisslinger, G, Batista, V.S, Ji, X, Cinatl, J, Keppler, O.T, Xiong, Y.
Deposit date:2018-06-26
Release date:2018-10-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structural basis for cancer drug interactions with the catalytic and allosteric sites of SAMHD1.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XKD
DownloadVisualize
BU of 5xkd by Molmil
Crystal structure of dibenzothiophene sulfone monooxygenase BdsA in complex with FMN at 2.4 angstrom
Descriptor: Dibenzothiophene desulfurization enzyme A, FLAVIN MONONUCLEOTIDE
Authors:Gu, L, Su, T, Liu, S, Su, J.
Deposit date:2017-05-07
Release date:2018-05-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Structural and Biochemical Characterization of BdsA fromBacillus subtilisWU-S2B, a Key Enzyme in the "4S" Desulfurization Pathway.
Front Microbiol, 9, 2018
5B39
DownloadVisualize
BU of 5b39 by Molmil
KIR3DL1*015 in complex with HLA-B*57:01
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Vivian, J.P, Rossjohn, J.
Deposit date:2016-02-12
Release date:2016-03-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Killer cell immunoglobulin-like receptor 3DL1 polymorphism defines distinct hierarchies of HLA class I recognition
J.Exp.Med., 213, 2016
5AYT
DownloadVisualize
BU of 5ayt by Molmil
Crystal structure of transthyretin in complex with L6
Descriptor: 2-oxidanyl-6-(phenylcarbonyl)benzo[de]isoquinoline-1,3-dione, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M, Kai, H.
Deposit date:2015-09-03
Release date:2016-01-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural stabilization of transthyretin by a new compound, 6-benzoyl-2-hydroxy-1H-benzo[de]isoquinoline-1,3(2H)-dione
J. Pharmacol. Sci., 129, 2015
7MQ2
DownloadVisualize
BU of 7mq2 by Molmil
C9A Streptococcus pneumoniae CstR in the reduced state, space group P21
Descriptor: Copper-sensing transcriptional repressor csoR
Authors:Fakhoury, J.N, Gonzalez-Gutierrez, G, Giedroc, D.P.
Deposit date:2021-05-05
Release date:2022-03-09
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Functional asymmetry and chemical reactivity of CsoR family persulfide sensors.
Nucleic Acids Res., 49, 2021
7MQ3
DownloadVisualize
BU of 7mq3 by Molmil
C9A N55A Streptococcus pneumoniae CstR in the reduced state
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Copper-sensing transcriptional repressor csoR, SODIUM ION
Authors:Fakhoury, J, Gonzalez-Gutierrez, G, Giedroc, D.P.
Deposit date:2021-05-05
Release date:2022-03-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Functional asymmetry and chemical reactivity of CsoR family persulfide sensors.
Nucleic Acids Res., 49, 2021
5XTA
DownloadVisualize
BU of 5xta by Molmil
Crystal structure of lpg1832, a VirK family protein from Legionella pneumophila
Descriptor: GLYCEROL, SULFATE ION, VirK protein
Authors:Yin, S, Gong, X, Zhang, N, Ge, H.
Deposit date:2017-06-18
Release date:2017-08-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of lpg1832, a VirK family protein from Legionella pneumophila, reveals a novel fold for bacterial VirK proteins
FEBS Lett., 591, 2017
5UQE
DownloadVisualize
BU of 5uqe by Molmil
Multidomain structure of human kidney-type glutaminase(KGA/GLS)
Descriptor: Glutaminase kidney isoform, mitochondrial, N,N'-[sulfanediylbis(ethane-2,1-diyl-1,3,4-thiadiazole-5,2-diyl)]bis(2-phenylacetamide)
Authors:Pasquali, C.C, Dias, S.M.G, Ambrosio, A.L.B.
Deposit date:2017-02-08
Release date:2017-05-24
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The origin and evolution of human glutaminases and their atypical C-terminal ankyrin repeats.
J. Biol. Chem., 292, 2017
3HQQ
DownloadVisualize
BU of 3hqq by Molmil
Crystal structure of Leishmania mexicana pyruvate kinase (LmPYK) in complex with Fructose 2,6 bisphosphate
Descriptor: 2,6-di-O-phosphono-beta-D-fructofuranose, Pyruvate kinase
Authors:Morgan, H.P, Walkinshaw, M.D.
Deposit date:2009-06-08
Release date:2010-02-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (5.07 Å)
Cite:The allosteric mechanism of pryuvate kinase from Leishmania mexicana: a rock and lock model
J.Biol.Chem., 285, 2010
5ZW2
DownloadVisualize
BU of 5zw2 by Molmil
FAD complex of PigA
Descriptor: 1,2-ETHANEDIOL, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, ACETATE ION, ...
Authors:Lee, C.-C, Ko, T.-P, Wang, A.H.J.
Deposit date:2018-05-14
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.803 Å)
Cite:Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis.
Chembiochem, 20, 2019
6DD9
DownloadVisualize
BU of 6dd9 by Molmil
Structure of mouse SYCP3, P1 form
Descriptor: Synaptonemal complex protein 3
Authors:Rosenberg, S.C, Munoz, I.C, Uson, I, Corbett, K.D.
Deposit date:2018-05-09
Release date:2018-08-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A conserved filamentous assembly underlies the structure of the meiotic chromosome axis.
Elife, 8, 2019
3LD4
DownloadVisualize
BU of 3ld4 by Molmil
Urate oxidase complexed with 8-nitro xanthine
Descriptor: 1,2-ETHANEDIOL, 8-nitro-3,7-dihydro-1H-purine-2,6-dione, SODIUM ION, ...
Authors:Prange, T, Colloc'h, N, Gabison, L.
Deposit date:2010-01-12
Release date:2010-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Near-atomic resolution structures of urate oxidase complexed with its substrate and analogues: the protonation state of the ligand.
Acta Crystallogr.,Sect.D, 66, 2010
3LGA
DownloadVisualize
BU of 3lga by Molmil
Crystal structure of P. abyssi tRNA m1A58 methyltransferase in complex with S-adenosyl-L-homocysteine
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SAM-dependent methyltransferase, SULFATE ION
Authors:Guelorget, A, Golinelli-Pimpaneau, B.
Deposit date:2010-01-20
Release date:2010-06-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Insights into the hyperthermostability and unusual region-specificity of archaeal Pyrococcus abyssi tRNA m1A57/58 methyltransferase.
Nucleic Acids Res., 38, 2010
5DWB
DownloadVisualize
BU of 5dwb by Molmil
Crystal structure of specific restriction endonuclease AgeI-DNA complex
Descriptor: DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A*)-3'), Type-2 restriction enzyme AgeI
Authors:Tamulaitiene, G, Jovaisaite, V, Grazulis, S, Siksnys, V.
Deposit date:2015-09-22
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA.
Nucleic Acids Res., 45, 2017
4BJ8
DownloadVisualize
BU of 4bj8 by Molmil
Zebavidin
Descriptor: BIOTIN, GLYCEROL, ZEBAVIDIN
Authors:Airenne, T.T, Parthiban, M, Niederhauser, B, Zmurko, J, Kulomaa, M.S, Hytonen, V.P, Johnson, M.S.
Deposit date:2013-04-17
Release date:2013-11-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Zebavidin
Plos One, 8, 2013
6DWK
DownloadVisualize
BU of 6dwk by Molmil
SAMHD1 Bound to Fludarabine-TP in the Catalytic Pocket
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-fluoro-9-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}-9H-purin-6-a mine, ...
Authors:Knecht, K.M, Buzovetsky, O, Schneider, C, Thomas, D, Srikanth, V, Kaderali, L, Tofoleanu, F, Reiss, K, Ferreiros, N, Geisslinger, G, Batista, V.S, Ji, X, Cinatl, J, Keppler, O.T, Xiong, Y.
Deposit date:2018-06-26
Release date:2018-10-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structural basis for cancer drug interactions with the catalytic and allosteric sites of SAMHD1.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5E6C
DownloadVisualize
BU of 5e6c by Molmil
Glucocorticoid receptor DNA binding domain - CCL2 NF-kB response element complex
Descriptor: DNA (5'-D(*AP*GP*TP*GP*GP*AP*AP*AP*TP*TP*CP*CP*CP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*GP*GP*GP*AP*AP*TP*TP*TP*CP*CP*AP*CP*T)-3'), Glucocorticoid receptor, ...
Authors:Hudson, W.H, Rye, E.A, Herbst, A.G, Ortlund, E.A.
Deposit date:2015-10-09
Release date:2017-02-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Cryptic glucocorticoid receptor-binding sites pervade genomic NF-kappa B response elements.
Nat Commun, 9, 2018
5E69
DownloadVisualize
BU of 5e69 by Molmil
Glucocorticoid receptor DNA binding domain - IL8 NF-kB response element complex
Descriptor: DNA (5'-D(*AP*TP*CP*GP*TP*GP*GP*AP*AP*TP*TP*TP*CP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*GP*AP*AP*AP*TP*TP*CP*CP*AP*CP*GP*AP*T)-3'), Glucocorticoid receptor, ...
Authors:Hudson, W.H, Rye, E.A, Herbst, A.G, Ortlund, E.A.
Deposit date:2015-10-09
Release date:2017-02-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Cryptic glucocorticoid receptor-binding sites pervade genomic NF-kappa B response elements.
Nat Commun, 9, 2018
5E6D
DownloadVisualize
BU of 5e6d by Molmil
Glucocorticoid receptor DNA binding domain - ICAM1 NF-kB response element complex
Descriptor: DNA (5'-D(*GP*CP*TP*CP*CP*GP*GP*AP*AP*TP*TP*TP*CP*CP*AP*A)-3'), DNA (5'-D(*TP*TP*GP*GP*AP*AP*AP*TP*TP*CP*CP*GP*GP*AP*GP*C)-3'), Glucocorticoid receptor, ...
Authors:Hudson, W.H, Rye, E.A, Herbst, A.G, Ortlund, E.A.
Deposit date:2015-10-09
Release date:2017-02-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Cryptic glucocorticoid receptor-binding sites pervade genomic NF-kappa B response elements.
Nat Commun, 9, 2018
5ZW7
DownloadVisualize
BU of 5zw7 by Molmil
FAD-PigA complex at 1.3 A
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Lee, C.-C, Ko, T.-P, Wang, A.H.J.
Deposit date:2018-05-14
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis.
Chembiochem, 20, 2019
6AF6
DownloadVisualize
BU of 6af6 by Molmil
PigA with FAD and proline
Descriptor: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Lee, C.-C, Ko, T.-P, Wang, A.H.J.
Deposit date:2018-08-08
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis.
Chembiochem, 20, 2019
5T30
DownloadVisualize
BU of 5t30 by Molmil
Human MnSOD-azide complex
Descriptor: AZIDE ION, MANGANESE (II) ION, PHOSPHATE ION, ...
Authors:Azadmanesh, J, Trickel, S.R, Kolar, C.H, Lovelace, J.J, Borgstahl, G.E.O.
Deposit date:2016-08-24
Release date:2017-05-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Substrate-analog binding and electrostatic surfaces of human manganese superoxide dismutase.
J. Struct. Biol., 199, 2017
3KGF
DownloadVisualize
BU of 3kgf by Molmil
The structure of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase from Mycobacterium tuberculosis complexed with phenylalanine and tryptophan
Descriptor: CHLORIDE ION, GLYCEROL, MANGANESE (II) ION, ...
Authors:Parker, E.J, Jameson, G.B, Jiao, W, Webby, C.J, Baker, E.N, Baker, H.M, Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)
Deposit date:2009-10-29
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Synergistic allostery, a sophisticated regulatory network for the control of aromatic amino acid biosynthesis in Mycobacterium tuberculosis
J.Biol.Chem., 285, 2010
3L9G
DownloadVisualize
BU of 3l9g by Molmil
Urate oxidase complexed with uric acid and chloride
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CHLORIDE ION, SODIUM ION, ...
Authors:Prange, T, Colloc'h, N, Gabison, L.
Deposit date:2010-01-05
Release date:2010-06-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Near-atomic resolution structures of urate oxidase complexed with its substrate and analogues: the protonation state of the ligand.
Acta Crystallogr.,Sect.D, 66, 2010
5ZW0
DownloadVisualize
BU of 5zw0 by Molmil
Apo-form PigA
Descriptor: L-prolyl-[peptidyl-carrier protein] dehydrogenase
Authors:Lee, C.-C, Ko, T.-P, Wang, A.H.J.
Deposit date:2018-05-14
Release date:2018-09-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Crystal Structure of PigA: A Prolyl Thioester-Oxidizing Enzyme in Prodigiosin Biosynthesis.
Chembiochem, 20, 2019

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon