PDB: 3135 resultsInfo pagesStatus searchChemie searchBIRD

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7AHR	Enzyme of biosynthetic pathway Descriptor: 3-[(1-Carboxyvinyl)oxy]benzoic acid, Chorismate dehydratase, GLYCEROL Authors: Archna, A, Breithaupt, C, Stubbs, M.T. Deposit date: 2020-09-25 Release date: 2021-10-06 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Mechanism of chorismate dehydratase MqnA, the first enzyme of the futalosine pathway, proceeds via substrate-assisted catalysis J.Biol.Chem., 2022
7BT2	Crystal structure of the SERCA2a in the E2.ATP state Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Kabashima, Y, Ogawa, H, Nakajima, R, Toyoshima, C. Deposit date: 2020-03-31 Release date: 2020-07-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.00002861 Å) Cite: What ATP binding does to the Ca2+pump and how nonproductive phosphoryl transfer is prevented in the absence of Ca2. Proc.Natl.Acad.Sci.USA, 117, 2020
5K3M	Crystal structure of Retinoic acid receptor-related orphan receptor (ROR) gamma ligand binding domain complex with UUA Descriptor: Nuclear receptor ROR-gamma, Ursolic acid Authors: Huang, P, Rastinejad, F. Deposit date: 2016-05-19 Release date: 2017-05-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.894 Å) Cite: Crystal structure of Retinoic acid receptor-related orphan receptor (ROR) gamma ligand binding domain complex with UUA To be published
6CCX	NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc Descriptor: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ... Authors: Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M. Deposit date: 2018-02-07 Release date: 2018-09-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site. Cell Chem Biol, 25, 2018
6CCH	NMR data-driven model of GTPase KRas-GMPPNP tethered to a nanodisc (E3 state) Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, GTPase KRas, ... Authors: Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M. Deposit date: 2018-02-07 Release date: 2018-08-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site. Cell Chem Biol, 25, 2018
5KMG	Near-atomic cryo-EM structure of PRC1 bound to the microtubule Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kellogg, E.H, Howes, S, Ti, S.-C, Ramirez-Aportela, E, Kapoor, T.M, Chacon, P, Nogales, E. Deposit date: 2016-06-27 Release date: 2016-08-03 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Near-atomic cryo-EM structure of PRC1 bound to the microtubule. Proc.Natl.Acad.Sci.USA, 113, 2016
6DM0	Open state GluA2 in complex with STZ and blocked by IEM-1460, after micelle signal subtraction Descriptor: CYCLOTHIAZIDE, GLUTAMIC ACID, Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit, ... Authors: Twomey, E.C, Yelshanskaya, M.V, Vassilevski, A.A, Sobolevsky, A.I. Deposit date: 2018-06-04 Release date: 2018-08-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Mechanisms of Channel Block in Calcium-Permeable AMPA Receptors. Neuron, 99, 2018
6CC9	NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc Descriptor: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ... Authors: Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M. Deposit date: 2018-02-06 Release date: 2018-09-05 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site. Cell Chem Biol, 25, 2018
7D91	Crystal Structure of the Na+,K+-ATPase in the E2P state with bound Mg2+ (P4(3)2(1)2 symmetry) Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Kanai, R, Cornelius, F, Ogawa, H, Motoyama, K, Vilsen, B, Toyoshima, C. Deposit date: 2020-10-12 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
7DDH	Crystal structures of Na+,K+-ATPase in complex with digoxin Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ogawa, H, Cornelius, F, Kanai, R, Motoyama, K, Vilsen, B, Toyoshima, C. Deposit date: 2020-10-29 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.46 Å) Cite: Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
7DDL	Crystal structures of Na+,K+-ATPase in complex with bufalin Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ogawa, H, Cornelius, F, Kanai, R, Motoyama, K, Vilsen, B, Toyoshima, C. Deposit date: 2020-10-29 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
7D92	Crystal Structure of the Na+,K+-ATPase in the E2P state with bound Mg2+ and anthroylouabain (P4(3)2(1)2 symmetry) Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Kanai, R, Cornelius, F, Ogawa, H, Motoyama, K, Vilsen, B, Toyoshima, C. Deposit date: 2020-10-12 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
7D93	Crystal Structure of the Na+,K+-ATPase in the E2P state with bound Mg2+ and anthroylouabain (P2(1)2(1)2(1) symmetry) Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Kanai, R, Cornelius, F, Ogawa, H, Motoyama, K, Vilsen, B, Toyoshima, C. Deposit date: 2020-10-12 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.65 Å) Cite: Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
7DDI	Crystal structures of Na+,K+-ATPase in complex with digitoxin Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ogawa, H, Cornelius, F, Kanai, R, Motoyama, K, Vilsen, B, Toyoshima, C. Deposit date: 2020-10-29 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.72 Å) Cite: Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
7DDK	Crystal structures of Na+,K+-ATPase in complex with rostafuroxin Descriptor: (3S,5R,8R,9S,10S,13S,14S,17S)-17-(furan-3-yl)-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,15,16-dodecahydro-1H-cyclopenta[a]phenanthrene-3,14,17-triol, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ogawa, H, Cornelius, F, Kanai, R, Motoyama, K, Vilsen, B, Toyoshima, C. Deposit date: 2020-10-29 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
5IH1	Macrolide 2'-phosphotransferase type II - complex with GDP and phosphorylated josamycin Descriptor: CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Berghuis, A.M, Fong, D.H. Deposit date: 2016-02-28 Release date: 2017-04-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.31 Å) Cite: Structural Basis for Kinase-Mediated Macrolide Antibiotic Resistance. Structure, 25, 2017
6DLZ	Open state GluA2 in complex with STZ after micelle signal subtraction Descriptor: CYCLOTHIAZIDE, GLUTAMIC ACID, Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit Authors: Twomey, E.C, Yelshanskaya, M.V, Vassilevski, A.A, Sobolevsky, A.I. Deposit date: 2018-06-04 Release date: 2018-08-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Mechanisms of Channel Block in Calcium-Permeable AMPA Receptors. Neuron, 99, 2018
7DRT	Human Wntless in complex with Wnt3a Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Zhong, Q, Zhao, Y, Ye, F, Xiao, Z, Huang, G, Zhang, Y, Lu, P, Xu, W, Zhou, Q, Ma, D. Deposit date: 2020-12-29 Release date: 2021-07-14 Last modified: 2021-09-08 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: Cryo-EM structure of human Wntless in complex with Wnt3a. Nat Commun, 12, 2021
7AN7	Enzyme of biosynthetic pathway Descriptor: 3-[(1-Carboxyvinyl)oxy]benzoic acid, Chorismate dehydratase, GLYCEROL Authors: Archna, A, Breithaupt, C, Stubbs, M.T. Deposit date: 2020-10-11 Release date: 2022-04-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Mechanism of chorismate dehydratase MqnA, the first enzyme of the futalosine pathway, proceeds via substrate-assisted catalysis J.Biol.Chem., 2022
7AN8	Enzyme of biosynthetic pathway Descriptor: 3-[(1-Carboxyvinyl)oxy]benzoic acid, Chorismate dehydratase, GLYCEROL Authors: Archna, A, Breithaupt, C, Stubbs, M.T. Deposit date: 2020-10-11 Release date: 2022-04-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Mechanism of chorismate dehydratase MqnA, the first enzyme of the futalosine pathway, proceeds via substrate-assisted catalysis J.Biol.Chem., 2022
7AN9	Enzyme of biosynthetic pathway Descriptor: 3-[(1-Carboxyvinyl)oxy]benzoic acid, Chorismate dehydratase Authors: Archna, A, Breithaupt, C, Stubbs, M.T. Deposit date: 2020-10-11 Release date: 2022-04-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.11 Å) Cite: Mechanism of the chorismate dehydratase MqnA, first enzyme of the futalosine pathway Chemrxiv, 2022
5JP3	Structure of Xanthomonas campestris effector protein XopD bound to ubiquitin Descriptor: Polyubiquitin-B, Xanthomonas outer protein D Authors: Pruneda, J.N, Komander, D. Deposit date: 2016-05-03 Release date: 2016-07-27 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The Molecular Basis for Ubiquitin and Ubiquitin-like Specificities in Bacterial Effector Proteases. Mol.Cell, 63, 2016
7D94	Crystal Structure of the Na+,K+-ATPase in the E2P state with bound one Mg2+ and one Rb+ in the presence of bufalin Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Kanai, R, Cornelius, F, Ogawa, H, Motoyama, K, Vilsen, B, Toyoshima, C. Deposit date: 2020-10-12 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
7DDF	Crystal structures of Na+,K+-ATPase in complex with beryllium fluoride Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ogawa, H, Cornelius, F, Kanai, R, Motoyama, K, Vilsen, B, Toyoshima, C. Deposit date: 2020-10-29 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (4.62 Å) Cite: Binding of cardiotonic steroids to Na + ,K + -ATPase in the E2P state. Proc.Natl.Acad.Sci.USA, 118, 2021
6DM1	Open state GluA2 in complex with STZ and blocked by NASPM, after micelle signal subtraction Descriptor: CYCLOTHIAZIDE, GLUTAMIC ACID, Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit, ... Authors: Twomey, E.C, Yelshanskaya, M.V, Vassilevski, A.A, Sobolevsky, A.I. Deposit date: 2018-06-04 Release date: 2018-08-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Mechanisms of Channel Block in Calcium-Permeable AMPA Receptors. Neuron, 99, 2018

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