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8E2Q
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BU of 8e2q by Molmil
Crystal structure of TadAC-1.17 in a complex with ssDNA
Descriptor: DNA (5'-D(P*GP*CP*GP*GP*CP*TP*(D8A)P*CP*GP*GP*A)-3'), GLYCEROL, ZINC ION, ...
Authors:Feliciano, P.R, Lee, S.J, Ciaramella, G.
Deposit date:2022-08-15
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Improved cytosine base editors generated from TadA variants.
Nat.Biotechnol., 41, 2023
8DWT
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BU of 8dwt by Molmil
SPOP W22R Form 2
Descriptor: Speckle-type POZ protein
Authors:Cuneo, M.J, Mittag, T, O'Flynn, B, Lo, Y.H.
Deposit date:2022-08-02
Release date:2023-01-18
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Higher-order SPOP assembly reveals a basis for cancer mutant dysregulation.
Mol.Cell, 83, 2023
6Z6U
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BU of 6z6u by Molmil
1.25 A structure of human apoferritin obtained from Titan Mono-BCOR microscope
Descriptor: Ferritin heavy chain, MAGNESIUM ION, SODIUM ION
Authors:Yip, K.M, Fischer, N, Paknia, E, Chari, A, Stark, H.
Deposit date:2020-05-29
Release date:2020-06-24
Last modified:2021-02-10
Method:ELECTRON MICROSCOPY (1.25 Å)
Cite:Atomic-resolution protein structure determination by cryo-EM.
Nature, 587, 2020
8DWV
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BU of 8dwv by Molmil
Full-length wild type SPOP
Descriptor: Speckle-type POZ protein
Authors:Cuneo, M.J, Mittag, T, O'Flynn, B, Lo, Y.H.
Deposit date:2022-08-02
Release date:2023-01-18
Last modified:2023-03-22
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Higher-order SPOP assembly reveals a basis for cancer mutant dysregulation.
Mol.Cell, 83, 2023
7P2P
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BU of 7p2p by Molmil
Human Signal Peptidase Complex Paralog A (SPC-A)
Descriptor: Signal peptidase complex catalytic subunit SEC11A, Signal peptidase complex subunit 1, Signal peptidase complex subunit 2, ...
Authors:Liaci, A.M, Foerster, F.
Deposit date:2021-07-06
Release date:2021-10-06
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Structure of the human signal peptidase complex reveals the determinants for signal peptide cleavage.
Mol.Cell, 81, 2021
8DWS
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BU of 8dws by Molmil
Full-length E47K SPOP
Descriptor: Speckle-type POZ protein
Authors:Cuneo, M.J, Mittag, T, O'Flynn, B, Lo, Y.H.
Deposit date:2022-08-02
Release date:2023-01-18
Last modified:2023-03-22
Method:ELECTRON MICROSCOPY (3.73 Å)
Cite:Higher-order SPOP assembly reveals a basis for cancer mutant dysregulation.
Mol.Cell, 83, 2023
6CJ7
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BU of 6cj7 by Molmil
Crystal structure of Manduca sexta Serine protease inhibitor (Serpin)-12
Descriptor: Serpin-12
Authors:Gulati, M, Hu, Y, Peng, S, Pathak, P.K, Wang, Y, Deng, J, Jiang, H.
Deposit date:2018-02-26
Release date:2018-07-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Manduca sexta serpin-12 controls the prophenoloxidase activation system in larval hemolymph.
Insect Biochem. Mol. Biol., 99, 2018
7P2Q
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BU of 7p2q by Molmil
Human Signal Peptidase Complex Paralog C (SPC-C)
Descriptor: Signal peptidase complex catalytic subunit SEC11C, Signal peptidase complex subunit 1, Signal peptidase complex subunit 2, ...
Authors:Liaci, A.M, Foerster, F.
Deposit date:2021-07-06
Release date:2021-10-06
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Structure of the human signal peptidase complex reveals the determinants for signal peptide cleavage.
Mol.Cell, 81, 2021
8DWU
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BU of 8dwu by Molmil
SPOP W22R Form 1
Descriptor: Speckle-type POZ protein
Authors:Cuneo, M.J, Mittag, T, O'Flynn, B.
Deposit date:2022-08-02
Release date:2023-01-18
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Higher-order SPOP assembly reveals a basis for cancer mutant dysregulation.
Mol.Cell, 83, 2023
4R1S
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BU of 4r1s by Molmil
Crystal structure of Petunia hydrida cinnamoyl-CoA reductase
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, cinnamoyl CoA reductase
Authors:Noel, J.P, Louie, G.V, Bowman, M.E, Bomati, E.K.
Deposit date:2014-08-07
Release date:2014-10-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Studies of Cinnamoyl-CoA Reductase and Cinnamyl-Alcohol Dehydrogenase, Key Enzymes of Monolignol Biosynthesis.
Plant Cell, 26, 2014
6Z23
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BU of 6z23 by Molmil
Acylenzyme complex of cefotaxime bound to deacylation mutant KPC-2 (E166Q)
Descriptor: CEFOTAXIME, C3' cleaved, open, ...
Authors:Tooke, C.L, Hinchliffe, P, Spencer, J.
Deposit date:2020-05-14
Release date:2020-12-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Natural variants modify Klebsiella pneumoniae carbapenemase (KPC) acyl-enzyme conformational dynamics to extend antibiotic resistance.
J.Biol.Chem., 296, 2020
7OWY
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BU of 7owy by Molmil
Crystal structure of human mitochondrial ferritin (hMTF) Fe(II)-loaded for 3 minutes showing a peroxide anion as bridging species of iron ions in the ferroxidase site
Descriptor: CHLORIDE ION, FE (II) ION, Ferritin, ...
Authors:Pozzi, C, Ciambellotti, S, Tassone, G, Turano, P, Mangani, S.
Deposit date:2021-06-21
Release date:2021-10-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Iron Binding in the Ferroxidase Site of Human Mitochondrial Ferritin.
Chemistry, 27, 2021
6Z6Y
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BU of 6z6y by Molmil
Galectin-8 N-terminal domain in complex with a sulfatide mimicking a sphingolipid
Descriptor: ACETATE ION, Galectin-8, TRIETHYLENE GLYCOL, ...
Authors:Romero, A, Medrano, F.J.
Deposit date:2020-05-29
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Probing sulfatide-tissue lectin recognition with functionalized glycodendrimersomes.
Iscience, 24, 2021
5OHF
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BU of 5ohf by Molmil
Globin sensor domain of AfGcHK (FeIII form) in complex with cyanide, partially reduced
Descriptor: CHLORIDE ION, CYANIDE ION, Globin-coupled histidine kinase, ...
Authors:Skalova, T, Kolenko, P, Dohnalek, J, Stranava, M, Martinkova, M.
Deposit date:2017-07-16
Release date:2017-11-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Coordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intraprotein signal transduction.
J. Biol. Chem., 292, 2017
7QIU
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BU of 7qiu by Molmil
YsgA 23s RNA methyltransferase from Bacillus subtilis
Descriptor: rRNA methylase
Authors:Labar, G, Van Elder, D, Roovers, M, Droogmans, L.
Deposit date:2021-12-16
Release date:2022-12-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.877 Å)
Cite:The Bacillus subtilis open reading frame ysgA encodes the SPOUT methyltransferase RlmP forming 2'- O -methylguanosine at position 2553 in the A-loop of 23S rRNA.
Rna, 28, 2022
6Z24
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BU of 6z24 by Molmil
Acylenzyme complex of ceftazidime bound to deacylation mutant KPC-2 (E166Q)
Descriptor: ACYLATED CEFTAZIDIME, Carbapenem-hydrolyzing beta-lactamase KPC, SULFATE ION
Authors:Tooke, C.L, Hinchliffe, P, Spencer, J.
Deposit date:2020-05-14
Release date:2020-12-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Natural variants modify Klebsiella pneumoniae carbapenemase (KPC) acyl-enzyme conformational dynamics to extend antibiotic resistance.
J.Biol.Chem., 296, 2020
6W2G
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BU of 6w2g by Molmil
Crystal Structure of Y188G Variant of the Internal UBA Domain of HHR23A in Monoclinic Unit Cell
Descriptor: 1,2-ETHANEDIOL, UV excision repair protein RAD23 homolog A
Authors:Bowler, B.E, Zeng, B, Becht, D.C, Rothfuss, M, Sprang, S.R, Mou, T.-C.
Deposit date:2020-03-05
Release date:2021-03-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-Accuracy Prediction of Stabilizing Surface Mutations to the Three-Helix Bundle, UBA(1), with EmCAST.
J.Am.Chem.Soc., 145, 2023
6Z4U
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BU of 6z4u by Molmil
X-ray Crystallographic Structure of Orf9b from SARS-CoV-2
Descriptor: POLYETHYLENE GLYCOL (N=34), Protein 9b
Authors:Weeks, S.D, De Graef, S, Munawar, A.
Deposit date:2020-05-25
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:X-ray Crystallographic Structure of Orf9b from SARS-CoV-2
To Be Published
6W2I
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BU of 6w2i by Molmil
Crystal Structure of Y188G Variant of the Internal UBA Domain of HHR23A
Descriptor: GLYCEROL, UV excision repair protein RAD23 homolog A
Authors:Bowler, B.E, Zeng, B, Becht, D.C, Rothfuss, M, Sprang, S.R, Mou, T.-C.
Deposit date:2020-03-05
Release date:2021-03-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High-Accuracy Prediction of Stabilizing Surface Mutations to the Three-Helix Bundle, UBA(1), with EmCAST.
J.Am.Chem.Soc., 145, 2023
4QQW
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BU of 4qqw by Molmil
Crystal structure of T. fusca Cas3
Descriptor: CRISPR-associated helicase, Cas3 family, DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), ...
Authors:Ke, A, Huo, Y, Nam, K.H.
Deposit date:2014-06-30
Release date:2014-08-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.664 Å)
Cite:Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation.
Nat.Struct.Mol.Biol., 21, 2014
6ZHC
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BU of 6zhc by Molmil
PROTAC6 mediated complex of VHL:EloB:EloC and Bcl-xL
Descriptor: 1,2-ETHANEDIOL, 2-[8-(1,3-benzothiazol-2-ylcarbamoyl)-3,4-dihydro-1~{H}-isoquinolin-2-yl]-5-[3-[4-[3-[2-[2-[2-[2-[2-[3-[[(2~{S})-3,3-dimethyl-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-3-oxidanylidene-propoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]prop-1-ynyl]phenoxy]propyl]-1,3-thiazole-4-carboxylic acid, Bcl-2-like protein 1, ...
Authors:Chung, C.
Deposit date:2020-06-22
Release date:2020-08-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural Insights into PROTAC-Mediated Degradation of Bcl-xL.
Acs Chem.Biol., 15, 2020
5JY9
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BU of 5jy9 by Molmil
An iron-bound structure of the salicylate synthase Irp9
Descriptor: ACETATE ION, FE (II) ION, Putative salicylate synthetase, ...
Authors:Meneely, K.M, Lamb, A.L.
Deposit date:2016-05-13
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.162 Å)
Cite:An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016
7P06
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BU of 7p06 by Molmil
Cryo-EM structure of Pdr5 from Saccharomyces cerevisiae in outward-facing conformation with ADP-orthovanadate/ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ADP ORTHOVANADATE, MAGNESIUM ION, ...
Authors:Szewczak-Harris, A, Wagner, M, Du, D, Schmitt, L, Luisi, B.F.
Deposit date:2021-06-29
Release date:2021-11-10
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:Structure and efflux mechanism of the yeast pleiotropic drug resistance transporter Pdr5.
Nat Commun, 12, 2021
7P05
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BU of 7p05 by Molmil
Cryo-EM structure of Pdr5 from Saccharomyces cerevisiae in inward-facing conformation with ADP/ATP and rhodamine 6G
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Pleiotropic ABC efflux transporter of multiple drugs, ...
Authors:Szewczak-Harris, A, Wagner, M, Du, D, Schmitt, L, Luisi, B.F.
Deposit date:2021-06-29
Release date:2021-11-10
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structure and efflux mechanism of the yeast pleiotropic drug resistance transporter Pdr5.
Nat Commun, 12, 2021
7P03
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BU of 7p03 by Molmil
Cryo-EM structure of Pdr5 from Saccharomyces cerevisiae in inward-facing conformation without nucleotides
Descriptor: Pleiotropic ABC efflux transporter of multiple drugs
Authors:Szewczak-Harris, A, Wagner, M, Du, D, Schmitt, L, Luisi, B.F.
Deposit date:2021-06-29
Release date:2021-11-10
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Structure and efflux mechanism of the yeast pleiotropic drug resistance transporter Pdr5.
Nat Commun, 12, 2021

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PDB entries from 2024-07-17

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