Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2J68
DownloadVisualize
BU of 2j68 by Molmil
Bacterial dynamin-like protein BDLP, GDP bound
Descriptor: BACTERIAL DYNAMIN-LIKE PROTEIN, GUANOSINE-5'-DIPHOSPHATE
Authors:Low, H.H, Lowe, J.
Deposit date:2006-09-26
Release date:2006-12-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A Bacterial Dynamin-Like Protein
Nature, 444, 2006
4E7G
DownloadVisualize
BU of 4e7g by Molmil
E. cloacae C115D/R120A MurA in the unliganded state
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Zhu, J.-Y, Yang, Y, Schonbrunn, E.
Deposit date:2012-03-16
Release date:2013-03-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Open-close transition of MurA
To be Published
2J0X
DownloadVisualize
BU of 2j0x by Molmil
CRYSTAL STRUCTURE OF E. COLI ASPARTOKINASE III IN COMPLEX WITH LYSINE AND ASPARTATE (T-STATE)
Descriptor: ASPARTIC ACID, LYSINE, LYSINE-SENSITIVE ASPARTOKINASE 3, ...
Authors:Kotaka, M, Ren, J, Lockyer, M, Hawkins, A.R, Stammers, D.K.
Deposit date:2006-08-07
Release date:2006-08-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of R- and T-State Escherichia Coli Aspartokinase III: Mechanisms of the Allosteric Transition and Inhibition by Lysine.
J.Biol.Chem., 281, 2006
2IZN
DownloadVisualize
BU of 2izn by Molmil
MS2-RNA HAIRPIN (G-10) COMPLEX
Descriptor: 5'-R(*AP*CP*AP*UP*CP*GP*CP*GP*AP*UP *UP*AP*CP*GP*GP*AP*UP*GP*U)-3', MS2 COAT PROTEIN
Authors:Helgstrand, C, Grahn, E, Moss, T, Stonehouse, N.J, Tars, K, Stockley, P.G, Liljas, L.
Deposit date:2006-07-25
Release date:2006-07-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Investigating the Structural Basis of Purine Specificity in the Structures of MS2 Coat Protein RNA Translational Operator Complexes
Nucleic Acids Res., 30, 2002
2J7I
DownloadVisualize
BU of 2j7i by Molmil
ATYPICAL POLYPROLINE RECOGNITION BY THE CMS N-TERMINAL SH3 DOMAIN. CMS:CD2 HETERODIMER
Descriptor: CD2-ASSOCIATED PROTEIN, T-CELL SURFACE ANTIGEN CD2
Authors:Moncalian, G, Cardenes, N, Deribe, Y.L, Spinola-Amilibia, M, Dikic, I, Bravo, J.
Deposit date:2006-10-09
Release date:2006-11-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Atypical Polyproline Recognition by the Cms N-Terminal Src Homology 3 Domain.
J.Biol.Chem., 281, 2006
2J5B
DownloadVisualize
BU of 2j5b by Molmil
Structure of the Tyrosyl tRNA synthetase from Acanthamoeba polyphaga Mimivirus complexed with tyrosynol
Descriptor: 4-[(2S)-2-amino-3-hydroxypropyl]phenol, TYROSYL-TRNA SYNTHETASE
Authors:Abergel, C, Rudinger-thirion, J, Giege, R, Claverie, J.M.
Deposit date:2006-09-13
Release date:2007-09-25
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Virus-Encoded Aminoacyl-tRNA Synthetases: Structural and Functional Characterization of Mimivirus Tyrrs and Metrs.
J.Virol., 81, 2007
2J4K
DownloadVisualize
BU of 2j4k by Molmil
Crystal structure of uridylate kinase from Sulfolobus solfataricus in complex with UMP to 2.2 Angstrom resolution
Descriptor: CADMIUM ION, MAGNESIUM ION, URIDINE-5'-MONOPHOSPHATE, ...
Authors:Jensen, K.S, Johansson, E, Jensen, K.F.
Deposit date:2006-09-01
Release date:2007-02-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
Biochemistry, 46, 2007
2IZ9
DownloadVisualize
BU of 2iz9 by Molmil
MS2-RNA HAIRPIN (4ONE -5) COMPLEX
Descriptor: 5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3', MS2 COAT PROTEIN
Authors:Grahn, E, Stonehouse, N.J, Adams, C.J, Fridborg, K, Beigelman, L, Matulic-Adamic, J, Warriner, S.L, Stockley, P.G, Liljas, L.
Deposit date:2006-07-25
Release date:2006-07-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Deletion of a Single Hydrogen Bonding Atom from the MS2 RNA Operator Leads to Dramatic Rearrangements at the RNA-Coat Protein Interface
Nucleic Acids Res., 28, 2000
2J5X
DownloadVisualize
BU of 2j5x by Molmil
STRUCTURE OF THE SMALL G PROTEIN ARF6 IN COMPLEX WITH GTPGAMMAS
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, ADP-RIBOSYLATION FACTOR 6, MAGNESIUM ION
Authors:Pasqualato, S, Menetrey, J, Franco, M, Cherfils, J.
Deposit date:2006-09-20
Release date:2006-09-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Structural Gdp-GTP Cycle of Human Arf6.
Embo Rep., 2, 2001
4E9M
DownloadVisualize
BU of 4e9m by Molmil
NOD1 card domain with three disulfide-clinched, domain-swapped dimers in the asymmetric unit
Descriptor: CITRATE ANION, Nucleotide-binding oligomerization domain-containing protein 1
Authors:Berry, E.A, Huang, L.S, Walker-Kopp, N.
Deposit date:2012-03-21
Release date:2012-04-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of nod1 card domain with three disulfide-clinched, domain-swapped dimers in the asymmetric unit
To be Published
7S5C
DownloadVisualize
BU of 7s5c by Molmil
M. xanthus ferritin-like protein EncB
Descriptor: CALCIUM ION, EncB, FE (III) ION
Authors:Eren, E.
Deposit date:2021-09-10
Release date:2022-02-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural characterization of the Myxococcus xanthus encapsulin and ferritin-like cargo system gives insight into its iron storage mechanism.
Structure, 30, 2022
7S1K
DownloadVisualize
BU of 7s1k by Molmil
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Tsai, K, Stojkovic, V, Lee, D.J, Young, I.D, Szal, T, Vazquez-Laslop, N, Mankin, A.S, Fraser, J.S, Galonic Fujimori, D.
Deposit date:2021-09-02
Release date:2022-01-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.42 Å)
Cite:Structural basis for context-specific inhibition of translation by oxazolidinone antibiotics.
Nat.Struct.Mol.Biol., 29, 2022
3M3X
DownloadVisualize
BU of 3m3x by Molmil
Crystal structure of human carbonic anhydrase isozyme II with 4-{2-[N-(6-methoxy-5-nitropyrimidin-4-yl)amino]ethyl}benzenesulfonamide
Descriptor: 4-{2-[(6-methoxy-5-nitropyrimidin-4-yl)amino]ethyl}benzenesulfonamide, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
Authors:Grazulis, S, Manakova, E, Golovenko, D.
Deposit date:2010-03-10
Release date:2010-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:4-[N-(Substituted 4-pyrimidinyl)amino]benzenesulfonamides as inhibitors of carbonic anhydrase isozymes I, II, VII, and XIII
Bioorg.Med.Chem., 18, 2010
2IWH
DownloadVisualize
BU of 2iwh by Molmil
Structure of yeast Elongation Factor 3 in complex with ADPNP
Descriptor: ELONGATION FACTOR 3A, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SULFATE ION
Authors:Andersen, C.B.F, Becker, T, Blau, M, Anand, M, Halic, M, Balar, B, Mielke, T, Boesen, T, Pedersen, J.S, Spahn, C.M.T, Kinzy, T.G, Andersen, G.R, Beckmann, R.
Deposit date:2006-06-30
Release date:2006-08-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of Eef3 and the Mechanism of Transfer RNA Release from the E-Site.
Nature, 443, 2006
7S5K
DownloadVisualize
BU of 7s5k by Molmil
M. xanthus ferritin-like protein EncB
Descriptor: CALCIUM ION, EncB, FE (III) ION
Authors:Eren, E.
Deposit date:2021-09-10
Release date:2022-02-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural characterization of the Myxococcus xanthus encapsulin and ferritin-like cargo system gives insight into its iron storage mechanism.
Structure, 30, 2022
2IUZ
DownloadVisualize
BU of 2iuz by Molmil
Crystal structure of Aspergillus fumigatus chitinase B1 in complex with C2-dicaffeine
Descriptor: 1,1'-ETHANE-1,2-DIYLBIS(3,7-DIMETHYL-3,7-DIHYDRO-1H-PURINE-2,6-DIONE), CHITINASE, SULFATE ION
Authors:Schuttelkopf, A.W, Andersen, O.A, Rao, F.V, Allwood, M, Lloyd, C.M, Eggleston, I.M, Van Aalten, D.M.F.
Deposit date:2006-06-08
Release date:2006-06-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Screening-Based Discovery and Structural Dissection of a Novel Family 18 Chitinase Inhibitor
J.Biol.Chem., 281, 2006
7RYG
DownloadVisualize
BU of 7ryg by Molmil
A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S
Descriptor: (4S,4aS,5aR,12aS)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2S)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, 16S Ribosomal RNA, 23S ribosomal RNA, ...
Authors:Morgan, C.E, Yu, E.W.
Deposit date:2021-08-25
Release date:2022-02-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.38 Å)
Cite:An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii.
Mbio, 13, 2022
7RYH
DownloadVisualize
BU of 7ryh by Molmil
A. baumannii Ribosome-TP-6076 complex: Empty 70S
Descriptor: (4S,4aS,5aR,12aS)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2S)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, 16S Ribosomal RNA, 23S ribosomal RNA, ...
Authors:Morgan, C.E, Yu, E.W.
Deposit date:2021-08-25
Release date:2022-02-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.43 Å)
Cite:An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii.
Mbio, 13, 2022
7RYF
DownloadVisualize
BU of 7ryf by Molmil
A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S
Descriptor: (4S,4aS,5aR,12aS)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2S)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide, 16S Ribosomal RNA, 23S ribosomal RNA, ...
Authors:Morgan, C.E, Yu, E.W.
Deposit date:2021-08-25
Release date:2022-02-02
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii.
Mbio, 13, 2022
4EST
DownloadVisualize
BU of 4est by Molmil
CRYSTAL STRUCTURE OF THE COVALENT COMPLEX FORMED BY A PEPTIDYL ALPHA,ALPHA-DIFLUORO-BETA-KETO AMIDE WITH PORCINE PANCREATIC ELASTASE AT 1.78-ANGSTROMS RESOLUTION
Descriptor: CALCIUM ION, ELASTASE, INHIBITOR ACE-ALA-PRO-VAI-DIFLUORO-N-PHENYLETHYLACETAMIDE, ...
Authors:Takahashi, L.H, Radhakrishnan, R, Rosenfieldjunior, R.E, Meyerjunior, E.F, Trainor, D.A.
Deposit date:1989-05-15
Release date:1992-04-15
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of the Covalent Complex Formed by a Peptidyl Alpha,Alpha-Difluoro-Beta-Keto Amide with Porcine Pancreatic Elastase at 1.78-Angstroms Resolution
J.Am.Chem.Soc., 111, 1989
3M5E
DownloadVisualize
BU of 3m5e by Molmil
Crystal structure of human carbonic anhydrase isozyme II with 4-{[N-(6-chloro-5-formyl-2-methylthiopyrimidin-4-yl)amino]methyl}benzenesulfonamide
Descriptor: 4-({[6-chloro-5-formyl-2-(methylsulfanyl)pyrimidin-4-yl]amino}methyl)benzenesulfonamide, Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ...
Authors:Grazulis, S, Manakova, E, Golovenko, D.
Deposit date:2010-03-12
Release date:2010-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:4-[N-(Substituted 4-pyrimidinyl)amino]benzenesulfonamides as inhibitors of carbonic anhydrase isozymes I, II, VII, and XIII
Bioorg.Med.Chem., 18, 2010
7SC1
DownloadVisualize
BU of 7sc1 by Molmil
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, R40-1G8
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, R40-1G8 Fab heavy chain, R40-1G8 Fab light chain, ...
Authors:Fan, C, Bjorkman, P.J.
Deposit date:2021-09-26
Release date:2022-02-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Discovery of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite neutralizers.
Cell Host Microbe, 30, 2022
2IHF
DownloadVisualize
BU of 2ihf by Molmil
Crystal structure of deletion mutant delta 228-252 R190A of the single-stranded DNA binding protein from Thermus aquaticus
Descriptor: Single-stranded DNA-binding protein
Authors:Fedorov, R, Witte, G, Urbanke, C, Manstein, D.J, Curth, U.
Deposit date:2006-09-26
Release date:2007-01-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:3D structure of Thermus aquaticus single-stranded DNA-binding protein gives insight into the functioning of SSB proteins.
Nucleic Acids Res., 34, 2006
2IZM
DownloadVisualize
BU of 2izm by Molmil
MS2-RNA HAIRPIN (C-10) COMPLEX
Descriptor: 5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3', Capsid protein
Authors:Helgstrand, C, Grahn, E, Moss, T, Stonehouse, N.J, Tars, K, Stockley, P.G, Liljas, L.
Deposit date:2006-07-25
Release date:2007-07-03
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Investigating the Structural Basis of Purine Specificity in the Structures of MS2 Coat Protein RNA Translational Operator Complexes
Nucleic Acids Res., 30, 2002
2J4F
DownloadVisualize
BU of 2j4f by Molmil
Torpedo acetylcholinesterase - Hg heavy-atom derivative
Descriptor: ACETYLCHOLINESTERASE, MERCURY (II) ION
Authors:Kreimer, D.I, Dolginova, E.A, Raves, M, Sussman, J.L, Silman, I, Weiner, L.
Deposit date:2006-08-30
Release date:2006-09-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Metastable State of Torpedo Californica Acetylcholinesterase Generated by Modification with Organomercurials
Biochemistry, 33, 1994

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon