Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7CNZ
DownloadVisualize
BU of 7cnz by Molmil
Crystal structure of 10PE bound PSD from E. coli (2.70 A)
Descriptor: 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, PHOSPHATE ION, Phosphatidylserine decarboxylase alpha chain, ...
Authors:Kim, J, Cho, G.
Deposit date:2020-08-03
Release date:2021-03-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
7CNW
DownloadVisualize
BU of 7cnw by Molmil
Crystal structure of Apo PSD from E. coli (1.90 A)
Descriptor: DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain, ...
Authors:Kim, J, Cho, G.
Deposit date:2020-08-03
Release date:2021-03-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
7CKG
DownloadVisualize
BU of 7ckg by Molmil
Crystal structure of TMSiPheRS complexed with TMSiPhe
Descriptor: 4-(trimethylsilyl)-L-phenylalanine, Tyrosine--tRNA ligase
Authors:Sun, J.P, Wang, J.Y, Zhu, Z.L, He, Q.T, Xiao, P.
Deposit date:2020-07-17
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.053 Å)
Cite:DeSiphering receptor core-induced and ligand-dependent conformational changes in arrestin via genetic encoded trimethylsilyl 1 H-NMR probe.
Nat Commun, 11, 2020
7C6C
DownloadVisualize
BU of 7c6c by Molmil
Crystal structure of native chitosanase from Bacillus subtilis MY002
Descriptor: (2S)-2-hydroxybutanedioic acid, Chitosanase
Authors:Gou, Y, Liu, Z.C, Xie, T, Wang, G.G.
Deposit date:2020-05-21
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.258 Å)
Cite:Structure-based rational design of chitosanase CsnMY002 for high yields of chitobiose.
Colloids Surf B Biointerfaces, 202, 2021
7CV1
DownloadVisualize
BU of 7cv1 by Molmil
Structure of human tRNAHis guanylyltransferase (Thg1) in the presence of human mitochondrial tRNAHis
Descriptor: Probable tRNA(His) guanylyltransferase
Authors:Nakamura, A, Wang, D, Komatsu, Y.
Deposit date:2020-08-25
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (4 Å)
Cite:Analysis of GTP addition in the reverse (3'-5') direction by human tRNA His guanylyltransferase.
Rna, 27, 2021
7CB0
DownloadVisualize
BU of 7cb0 by Molmil
The apo 6-phosphogluconate dehydrogenase from Staphylococcus aureus (strain Newman)
Descriptor: 6-phosphogluconate dehydrogenase, decarboxylating
Authors:Wang, H, Wang, M, Sun, H.
Deposit date:2020-06-10
Release date:2021-04-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Multi-target mode of action of silver against Staphylococcus aureus endows it with capability to combat antibiotic resistance.
Nat Commun, 12, 2021
7CB5
DownloadVisualize
BU of 7cb5 by Molmil
The 6-phosphogluconate dehydrogenase from Staphylococcus aureus (6-phosphogluconate bound)
Descriptor: 6-PHOSPHOGLUCONIC ACID, 6-phosphogluconate dehydrogenase, decarboxylating
Authors:Wang, H, Wang, M, Sun, H.
Deposit date:2020-06-10
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Multi-target mode of action of silver against Staphylococcus aureus endows it with capability to combat antibiotic resistance.
Nat Commun, 12, 2021
7CD9
DownloadVisualize
BU of 7cd9 by Molmil
Crystal Structure of SETDB1 tudor domain in complexed with Compound 6
Descriptor: 3-methyl-2-[[(3R,5R)-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-5H-pyrrolo[3,2-d]pyrimidin-4-one, CITRIC ACID, Histone-lysine N-methyltransferase SETDB1
Authors:Xiong, L, Guo, Y, Mao, X, Huang, L, Wu, C, Yang, S.
Deposit date:2020-06-19
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure-Guided Discovery of a Potent and Selective Cell-Active Inhibitor of SETDB1 Tudor Domain.
Angew.Chem.Int.Ed.Engl., 60, 2021
7C9N
DownloadVisualize
BU of 7c9n by Molmil
Crystal structure of SETDB1 tudor domain in complexed with Compound 1.
Descriptor: 3,5-dimethyl-2-[[(3R,5R)-1-methyl-5-phenyl-piperidin-3-yl]amino]pyrrolo[3,2-d]pyrimidin-4-one, Histone-lysine N-methyltransferase SETDB1
Authors:Guo, Y, Xiong, L, Mao, X, Yang, S.
Deposit date:2020-06-06
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.472 Å)
Cite:Structure-Guided Discovery of a Potent and Selective Cell-Active Inhibitor of SETDB1 Tudor Domain.
Angew.Chem.Int.Ed.Engl., 60, 2021
7C4B
DownloadVisualize
BU of 7c4b by Molmil
The crystal structure of Trypanosoma brucei RNase D : UMP complex
Descriptor: CCHC-type domain-containing protein, MANGANESE (II) ION, URIDINE-5'-MONOPHOSPHATE, ...
Authors:Gao, Y.Q, Gan, J.H.
Deposit date:2020-05-15
Release date:2021-04-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Structural basis for guide RNA trimming by RNase D ribonuclease in Trypanosoma brucei.
Nucleic Acids Res., 49, 2021
7CJT
DownloadVisualize
BU of 7cjt by Molmil
Crystal Structure of SETDB1 Tudor domain in complexed with (R,R)-59
Descriptor: 2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one, Histone-lysine N-methyltransferase SETDB1
Authors:Guo, Y.P, Liang, X, Mao, X, Wu, C, Luyi, H, Yang, S.
Deposit date:2020-07-13
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.474 Å)
Cite:Structure-Guided Discovery of a Potent and Selective Cell-Active Inhibitor of SETDB1 Tudor Domain.
Angew.Chem.Int.Ed.Engl., 60, 2021
7C47
DownloadVisualize
BU of 7c47 by Molmil
The crystal structure of Trypanosoma brucei RNase D : CMP complex
Descriptor: CCHC-type domain-containing protein, CYTIDINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, ...
Authors:Gao, Y.Q, Gan, J.H.
Deposit date:2020-05-15
Release date:2021-04-07
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for guide RNA trimming by RNase D ribonuclease in Trypanosoma brucei.
Nucleic Acids Res., 49, 2021
7CAJ
DownloadVisualize
BU of 7caj by Molmil
Crystal structure of SETDB1 Tudor domain in complexed with Compound 2.
Descriptor: 3-methyl-2-[[(3R,5R)-1-methyl-5-phenyl-piperidin-3-yl]amino]-5H-pyrrolo[3,2-d]pyrimidin-4-one, Histone-lysine N-methyltransferase SETDB1
Authors:Guo, Y.P, Liang, X, Xin, M, Luyi, H, Chengyong, W, Yang, S.Y.
Deposit date:2020-06-08
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.198 Å)
Cite:Structure-Guided Discovery of a Potent and Selective Cell-Active Inhibitor of SETDB1 Tudor Domain.
Angew.Chem.Int.Ed.Engl., 60, 2021
7CB6
DownloadVisualize
BU of 7cb6 by Molmil
The silver-bound 6-phosphogluconate dehydrogenase from Staphylococcus aureus (strain Newman)
Descriptor: 6-phosphogluconate dehydrogenase, decarboxylating, SILVER ION
Authors:Wang, H, Wang, M, Sun, H.
Deposit date:2020-06-10
Release date:2021-04-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Multi-target mode of action of silver against Staphylococcus aureus endows it with capability to combat antibiotic resistance.
Nat Commun, 12, 2021
7C8P
DownloadVisualize
BU of 7c8p by Molmil
Structural and functional characterization of human group A rotavirus P[25] VP8*
Descriptor: Outer capsid protein VP4
Authors:Duan, Z, Dandi, L.
Deposit date:2020-06-03
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Human group A rotavirus P[25] VP8* specifically binds to A-type histo-blood group antigen.
Virology, 555, 2021
7CHU
DownloadVisualize
BU of 7chu by Molmil
Geobacillus virus E2 - ORF18
Descriptor: Putative pectin lyase
Authors:Gong, Y.
Deposit date:2020-07-06
Release date:2021-04-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.008 Å)
Cite:Structural and functional characterization of the deep-sea thermophilic bacteriophage GVE2 tailspike protein.
Int.J.Biol.Macromol., 164, 2020
7CX5
DownloadVisualize
BU of 7cx5 by Molmil
Crystal structure of the DNA-binding domain of Bacillus subtilis CssR
Descriptor: Transcriptional regulatory protein CssR
Authors:Dahal, P, Kim, D.Y, Kwon, E.
Deposit date:2020-09-01
Release date:2021-04-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Crystal structure of the DNA-binding domain of Bacillus subtilis CssR.
Biochem.Biophys.Res.Commun., 555, 2021
7CJJ
DownloadVisualize
BU of 7cjj by Molmil
Photosystem II structure in the S2 state
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Li, H, Shen, J.-R, Suga, M.
Deposit date:2020-07-11
Release date:2021-04-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Capturing structural changes of the S 1 to S 2 transition of photosystem II using time-resolved serial femtosecond crystallography.
Iucrj, 8, 2021
7C6P
DownloadVisualize
BU of 7c6p by Molmil
Bromodomain-containing 4 BD2 in complex with 3',4',7,8- Tetrahydroxyflavonoid
Descriptor: 2-[3,4-bis(oxidanyl)phenyl]-7,8-bis(oxidanyl)chromen-4-one, Bromodomain-containing protein 4
Authors:Li, J, Yu, K, Luo, Y, Zheng, W, Liang, W, Zhu, J.
Deposit date:2020-05-22
Release date:2021-05-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Discovery of the natural product 3',4',7,8-tetrahydroxyflavone as a novel and potent selective BRD4 bromodomain 2 inhibitor.
J Enzyme Inhib Med Chem, 36, 2021
7C7U
DownloadVisualize
BU of 7c7u by Molmil
Biofilm associated protein - BSP domain
Descriptor: Biofilm-associated surface protein, CALCIUM ION
Authors:Ma, J.F, Xu, Z.H, Zhang, Y.K, Cheng, X, Fan, S.L, Wang, J.W, Fang, X.Y.
Deposit date:2020-05-26
Release date:2021-05-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural mechanism for modulation of functional amyloid and biofilm formation by Staphylococcal Bap protein switch.
Embo J., 40, 2021
7C2X
DownloadVisualize
BU of 7c2x by Molmil
Crystal Structure of Glycyrrhiza uralensis UGT73P12 complexed with glycyrrhetinic acid 3-O-monoglucuronide
Descriptor: (2~{S},3~{S},4~{S},5~{R},6~{R})-6-[[(3~{S},4~{a}~{R},6~{a}~{R},6~{b}~{S},8~{a}~{S},11~{S},12~{a}~{R},14~{a}~{R},14~{b}~{S})-11-carboxy-4,4,6~{a},6~{b},8~{a},11,14~{b}-heptamethyl-14-oxidanylidene-2,3,4~{a},5,6,7,8,9,10,12,12~{a},14~{a}-dodecahydro-1~{H}-picen-3-yl]oxy]-3,4,5-tris(oxidanyl)oxane-2-carboxylic acid, Glycosyltransferase, URIDINE-5'-DIPHOSPHATE
Authors:Ren, J.
Deposit date:2020-05-09
Release date:2021-05-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal Structure of Glycyrrhiza uralensis UGT73P12 complexed with glycyrrhetinic acid 3-O-monoglucuronide
To Be Published
7C2Z
DownloadVisualize
BU of 7c2z by Molmil
Bromodomain-containing 4 BD1 in complex with 3',4',7,8-Tetrahydroxyflavone
Descriptor: 2-[3,4-bis(oxidanyl)phenyl]-7,8-bis(oxidanyl)chromen-4-one, Bromodomain-containing protein 4, FORMIC ACID
Authors:Li, J, Zhu, J.
Deposit date:2020-05-10
Release date:2021-05-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Discovery of the natural product 3',4',7,8-tetrahydroxyflavone as a novel and potent selective BRD4 bromodomain 2 inhibitor.
J Enzyme Inhib Med Chem, 36, 2021
7CE4
DownloadVisualize
BU of 7ce4 by Molmil
Tankyrase2 catalytic domain in complex with K-476
Descriptor: 5-[3-[[1-(6,7-dimethoxyquinazolin-4-yl)piperidin-4-yl]methyl]-2-oxidanylidene-4H-quinazolin-1-yl]-2-fluoranyl-benzenecarbonitrile, Poly [ADP-ribose] polymerase tankyrase-2, SULFATE ION, ...
Authors:Takahashi, Y, Suzuki, M, Saito, J.
Deposit date:2020-06-22
Release date:2021-05-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The dual pocket binding novel tankyrase inhibitor K-476 enhances the efficacy of immune checkpoint inhibitor by attracting CD8 + T cells to tumors.
Am J Cancer Res, 11, 2021
7CP1
DownloadVisualize
BU of 7cp1 by Molmil
Crystal structure of isocitrate lyase in complex with succinate and itaconate
Descriptor: 2-methylidenebutanedioic acid, Isocitrate lyase, MAGNESIUM ION, ...
Authors:Kwon, S, Park, H.H.
Deposit date:2020-08-05
Release date:2021-05-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Heterogeneous multimeric structure of isocitrate lyase in complex with succinate and itaconate provides novel insights into its inhibitory mechanism.
Plos One, 16, 2021
7C8M
DownloadVisualize
BU of 7c8m by Molmil
Crystal structure of IscU wild-type
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Nitrogen-fixing NifU domain protein
Authors:Kunichika, K, Takahashi, Y, Fujishiro, T.
Deposit date:2020-06-03
Release date:2021-05-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The Structure of the Dimeric State of IscU Harboring Two Adjacent [2Fe-2S] Clusters Provides Mechanistic Insights into Cluster Conversion to [4Fe-4S].
Biochemistry, 60, 2021

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon