PDB: 79225 resultsInfo pagesStatus searchChemie searchBIRD

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4V6P	Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. Deposit date: 2011-12-08 Release date: 2014-07-09 Last modified: 2025-03-19 Method: ELECTRON MICROSCOPY (13.5 Å) Cite: Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
4V6R	Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. Deposit date: 2011-12-08 Release date: 2014-07-09 Last modified: 2025-03-19 Method: ELECTRON MICROSCOPY (11.5 Å) Cite: Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
5XLN	Crystal structure of the TRS_UNE-T and 4EHP complex Descriptor: Eukaryotic translation initiation factor 4E type 2, Threonine--tRNA ligase, cytoplasmic Authors: Hwang, J, Nguyen, L.T, Kim, M.H. Deposit date: 2017-05-11 Release date: 2018-11-21 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A threonyl-tRNA synthetase-mediated translation initiation machinery. Nat Commun, 10, 2019
4V6N	Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. Deposit date: 2011-12-07 Release date: 2014-07-09 Last modified: 2025-03-19 Method: ELECTRON MICROSCOPY (12.1 Å) Cite: Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
9MCW	OLE RNA dimer (Clostridium acetobutylicum) Descriptor: OLE RNA dimer Authors: Kretsch, R.C, Wu, Y, Das, R, Chiu, W. Deposit date: 2024-12-05 Release date: 2025-04-23 Last modified: 2025-05-21 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Naturally ornate RNA-only complexes revealed by cryo-EM. Nature, 2025
4V8U	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. Descriptor: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... Authors: Gao, Y.G, Feng, S, Chen, Y. Deposit date: 2012-08-28 Release date: 2014-07-09 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Crystal structure of 70S ribosome with both cognate tRNAs in the E and P sites representing an authentic elongation complex. PLoS ONE, 8, 2013
9MEE	GOLLD RNA nanocage (env-38) Descriptor: GOLLD RNA nanocage Authors: Kretsch, R.C, Wu, Y, Nye, G, Das, R, Chiu, W. Deposit date: 2024-12-06 Release date: 2025-04-30 Last modified: 2025-05-21 Method: ELECTRON MICROSCOPY (3 Å) Cite: Naturally ornate RNA-only complexes revealed by cryo-EM. Nature, 2025
5LZW	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... Authors: Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. Deposit date: 2016-10-02 Release date: 2016-11-30 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.53 Å) Cite: Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
5LZY	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... Authors: Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. Deposit date: 2016-10-02 Release date: 2016-11-30 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.99 Å) Cite: Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
5WDT	70S ribosome-EF-Tu H84A complex with GppNHp Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Fislage, M, Brown, Z, Frank, J. Deposit date: 2017-07-06 Release date: 2018-04-25 Last modified: 2025-02-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A. Nucleic Acids Res., 46, 2018
5WE4	70S ribosome-EF-Tu wt complex with GppNHp Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Fislage, M, Brown, Z, Frank, J. Deposit date: 2017-07-07 Release date: 2018-04-25 Last modified: 2025-02-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A. Nucleic Acids Res., 46, 2018
3JXE	Crystal structure of Pyrococcus horikoshii tryptophanyl-tRNA synthetase in complex with TrpAMP Descriptor: SULFATE ION, TRYPTOPHANYL-5'AMP, Tryptophanyl-tRNA synthetase Authors: Zhou, M, Dong, X, Zhong, C, Shen, N, Yang, B, Ding, J. Deposit date: 2009-09-19 Release date: 2009-11-10 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of P. horikoshii tryptophanyl-tRNA synthetase and structure-based phylogenetic analysis suggest an archaeal origin of tryptophanyl-tRNA synthetase To be Published
8BF7	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-24 Release date: 2023-08-16 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (2.33 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
5OQL	Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum Descriptor: 35S rRNA, 40S ribosomal protein S1, 40S ribosomal protein S11-like protein, ... Authors: Cheng, J, Kellner, N, Berninghausen, O, Hurt, E, Beckmann, R. Deposit date: 2017-08-12 Release date: 2017-10-11 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: 3.2- angstrom -resolution structure of the 90S preribosome before A1 pre-rRNA cleavage. Nat. Struct. Mol. Biol., 24, 2017
8VS9	Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Teran, D, Zhang, Y, Korostelev, A.A. Deposit date: 2024-01-23 Release date: 2024-05-01 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon. Front Microbiol, 15, 2024
8BHN	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BH4	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-29 Release date: 2023-08-16 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (2.62 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHJ	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8VSA	Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Teran, D, Zhang, Y, Korostelev, A.A. Deposit date: 2024-01-23 Release date: 2024-05-01 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon. Front Microbiol, 15, 2024
9NPJ	Structural studies of reaction hijacking inhibition of a malaria parasite aspartyl-tRNA synthetase. Descriptor: 9-(5-O-{[(1R,2R)-2-amino-3-carboxy-1-hydroxypropyl]sulfamoyl}-beta-D-lyxofuranosyl)-2-chloro-9H-purin-6-amine, GLYCEROL, aspartate--tRNA ligase Authors: Khandokar, Y, Ketprasit, K, Tai, C.W, Xie, S, Tilley, L, Griffin, M.D.W, Panjikar, S. Deposit date: 2025-03-11 Release date: 2025-06-04 Method: X-RAY DIFFRACTION (2.36 Å) Cite: Structural studies of reaction hijacking inhibition of a malaria parasite aspartyl-tRNA synthetase. To Be Published
7ZTA	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Leroy, E.C, Perry, T.N, Renault, T.T, Innis, C.A. Deposit date: 2022-05-09 Release date: 2023-04-12 Last modified: 2024-09-25 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Tetracenomycin X sequesters peptidyl-tRNA during translation of QK motifs. Nat.Chem.Biol., 19, 2023
8B59	Rosellinia necatrix megabirnavirus 1-W779 Crown protein Descriptor: RnMBV1 Crown protein Authors: Wang, H, Okamoto, K, Miyazaki, N, Suzuki, N. Deposit date: 2022-09-22 Release date: 2023-02-22 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Capsid structure of a fungal dsRNA megabirnavirus reveals its previously unidentified surface architecture. Plos Pathog., 19, 2023
8B4Z	Rosellinia necatrix megabirnavirus 1-W779 full capsid Descriptor: Major capsid protein A Authors: Wang, H, Okamoto, K, Miyazaki, N, Suzuki, N. Deposit date: 2022-09-21 Release date: 2023-02-22 Last modified: 2025-07-09 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Capsid structure of a fungal dsRNA megabirnavirus reveals its previously unidentified surface architecture. Plos Pathog., 19, 2023
6LPF	The crystal structure of human cytoplasmic LRS Descriptor: 2'-(L-NORVALYL)AMINO-2'-DEOXYADENOSINE, 5'-O-(L-leucylsulfamoyl)adenosine, GLYCEROL, ... Authors: Liu, R.J, Long, T, Li, H, Li, J, Zhao, J.H, Lin, J.Z, Palencia, A, Wang, M.Z, Cusack, S, Wang, E.D. Deposit date: 2020-01-10 Release date: 2020-03-25 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Molecular basis of the multifaceted functions of human leucyl-tRNA synthetase in protein synthesis and beyond. Nucleic Acids Res., 48, 2020
7M5D	Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Zhang, J. Deposit date: 2021-03-23 Release date: 2022-10-19 Last modified: 2025-03-19 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I) To Be Published

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