PDB: 1507 resultsInfo pagesStatus searchChemie searchBIRD

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2FCQ	X-ray Crystal Structure of a Chemically Synthesized Ubiquitin with a Cubic Space Group Descriptor: CADMIUM ION, Ubiquitin Authors: Bang, D, Gribenko, A.V, Tereshko, V, Kossiakoff, A.A, Kent, S.B, Makhatadze, G.I. Deposit date: 2005-12-12 Release date: 2006-01-31 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Dissecting the energetics of protein alpha-helix C-cap termination through chemical protein synthesis. Nat.Chem.Biol., 2, 2006
2DEN	Solution Structure of the Ubiquitin-Associated Domain of Human BMSC-UbP and its Complex with Ubiquitin Descriptor: Immunoglobulin G-binding protein G,Ubiquitin-like protein 7, Polyubiquitin-B Authors: Hu, H.Y, Lin, D.H, Chang, Y.G. Deposit date: 2006-02-14 Release date: 2006-06-13 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin Protein Sci., 15, 2006
2FAZ	Ubiquitin-Like Domain of Human Nuclear Zinc Finger Protein NP95 Descriptor: Ubiquitin-like containing PHD and RING finger domains protein 1 Authors: Walker, J.R, Wybenga-Groot, L, Doherty, R.S, Finerty Jr, P.J, Newman, E, Mackenzie, F.M, Weigelt, J, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2005-12-08 Release date: 2005-12-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Ubiquitin-Like Domain of Human Nuclear Zinc Finger Protein NP95 To be Published
3VFK	The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-amino-2-deoxy-beta-D-glucopyranose, 8-METHYLNONANOIC ACID, ... Authors: Economou, N.J, Weeks, S.D, Grasty, K.C, Loll, P.J. Deposit date: 2012-01-09 Release date: 2013-01-09 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach. Acta Crystallogr.,Sect.D, 69, 2013
3A9J	Crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 2, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
3B1L	Crystal Structure of parkin ubiquitin-like domain R33Q mutant Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K, Ikemiya, A, Amami, Y, In, Y, Ishida, T. Deposit date: 2011-07-04 Release date: 2012-07-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of parkin ubiquitin-like domain R33Q mutant to be published
2ZCB	Crystal Structure of ubiquitin P37A/P38A Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of ubiquitin P37A/P38A To be published
3AUL	Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation Descriptor: Polyubiquitin-C Authors: Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K. Deposit date: 2011-02-09 Release date: 2011-09-07 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Conformational dynamics of wild-type Lys48-linked diubiquitin in solution J.Biol.Chem., 286, 2011
3B08	Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, ZINC ION, ... Authors: Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. Deposit date: 2011-06-07 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.701 Å) Cite: Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
2ZCC	Ubiquitin crystallized under high pressure Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure of Ubiquitin crystallized under high pressure to be published
2ZEQ	Crystal structure of ubiquitin-like domain of murine Parkin Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K. Deposit date: 2007-12-14 Release date: 2008-08-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structure and molecular dynamics simulation of ubiquitin-like domain of murine parkin Biochim.Biophys.Acta, 1784, 2008
3ALB	Cyclic Lys48-linked tetraubiquitin Descriptor: SULFATE ION, ubiquitin Authors: Satoh, T, Sakata, E, Yamamoto, S, Yamaguchi, Y, Sumiyoshi, A, Wakatsuki, S, Kato, K. Deposit date: 2010-07-29 Release date: 2010-08-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of cyclic Lys48-linked tetraubiquitin Biochem.Biophys.Res.Commun., 2010
3AXC	Crystal structure of linear diubiquitin Descriptor: GLYCEROL, Ubiquitin Authors: Rohaim, A, Kawasaki, M, Kato, R, Dikic, I, Wakatsuki, S. Deposit date: 2011-04-01 Release date: 2012-01-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structure of a compact conformation of linear diubiquitin Acta Crystallogr.,Sect.D, 68, 2012
3B0A	Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, TRIS(HYDROXYETHYL)AMINOMETHANE, ... Authors: Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. Deposit date: 2011-06-07 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
3A9K	Crystal structure of the mouse TAB3-NZF in complex with Lys63-linked di-ubiquitin Descriptor: Mitogen-activated protein kinase kinase kinase 7-interacting protein 3, Ubiquitin, ZINC ION Authors: Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. Deposit date: 2009-10-29 Release date: 2009-12-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
8CMR	Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin Descriptor: OTU domain-containing protein, Polyubiquitin-B Authors: Uthoff, M, Hermanns, T, Boll, V, Hofmann, K, Baumann, U. Deposit date: 2023-02-21 Release date: 2023-11-22 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis. Nat Commun, 14, 2023
6V5D	EROS3 RDC and NOE Derived Ubiquitin Ensemble Descriptor: Ubiquitin Authors: Lange, O.F, Lakomek, N.A, Smith, C.A, Griesinger, C, de Groot, B.L. Deposit date: 2019-12-04 Release date: 2020-01-01 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Enhancing NMR derived ensembles with kinetics on multiple timescales. J.Biomol.Nmr, 74, 2020
6W9S	Crystal structure of an OTU deubiquitinase from Escherichia albertii bound to ubiquitin Descriptor: FORMIC ACID, OTU domain-containing protein EschOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2020-08-12 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
6W9R	Crystal structure of an OTU deubiquitinase from Wolbachia pipientis wMel bound to ubiquitin Descriptor: CITRATE ANION, OTU domain-containing protein wMelOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
5EMZ	Crystal structure of K48-linked diubiquitin with F45W mutation in the proximal unit Descriptor: Polyubiquitin-B, SULFATE ION Authors: Nakasone, M.A, Paukstelis, P.J, Fushman, D. Deposit date: 2015-11-07 Release date: 2016-11-16 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Structural characterization and practical fluorescence applications of the F45W ubiquitin mutant To Be Published
5GO7	Linear tri-ubiquitin Descriptor: D-ubiquitin, Ubiquitin Authors: Gao, S, Pan, M, Zheng, Y. Deposit date: 2016-07-26 Release date: 2016-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.801 Å) Cite: Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc., 138, 2016
5GOC	Lys11-linked diubiquitin Descriptor: D-ubiquitin, SODIUM ION, Ubiquitin Authors: Gao, S, Pan, M, Zheng, Y. Deposit date: 2016-07-26 Release date: 2016-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.733 Å) Cite: Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc., 138, 2016
5GOI	Lys48-linked di-ubiquitin Descriptor: D-ubiquitin, Ubiquitin Authors: Gao, S, Pan, M, Zheng, Y, Liu, L. Deposit date: 2016-07-27 Release date: 2016-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.594 Å) Cite: Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc., 138, 2016
5GOG	Lys29-linked di-ubiquitin Descriptor: D-ubiquitin, Ubiquitin Authors: Gao, S, Pan, M, Zheng, Y. Deposit date: 2016-07-27 Release date: 2016-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.977 Å) Cite: Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc., 138, 2016
5GOK	K11/K63-branched tri-Ubiquitin Descriptor: D-ubiquitin, Ubiquitin Authors: Gao, S, Pan, M, Zheng, Y, Liu, L. Deposit date: 2016-07-27 Release date: 2016-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc., 138, 2016

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