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2FPO
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Putative methyltransferase yhhF from Escherichia coli.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, methylase yhhF
Authors:Osipiuk, J, Kim, Y, Sanishvili, R, Skarina, T, Evdokimova, E, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-01-16
Release date:2006-02-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Methyltransferase that modifies guanine 966 of the 16 S rRNA: functional identification and tertiary structure.
J.Biol.Chem., 282, 2007
1X9J
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BU of 1x9j by Molmil
Structure of butyrate kinase 2 reveals both open- and citrate-induced closed conformations: implications for substrate-induced fit conformational changes
Descriptor: CITRIC ACID, GLYCEROL, PHOSPHATE ION, ...
Authors:Diao, J.S, Sanders, D.A, Hasson, M.S.
Deposit date:2004-08-21
Release date:2005-08-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of butyrate kinase 2 reveals both open and closed conformations of the two domains: implications for substrate-induced changes
To be Published
2FTE
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BU of 2fte by Molmil
Bacteriophage HK97 Expansion Intermediate IV
Descriptor: major capsid protein
Authors:Gan, L, Speir, J.A, Conway, J.F, Lander, G, Cheng, N, Firek, B.A, Hendrix, R.W, Duda, R.L, Liljas, L, Johnson, J.E.
Deposit date:2006-01-24
Release date:2006-02-07
Last modified:2025-03-05
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Capsid Conformational Sampling in HK97 Maturation Visualized by X-Ray Crystallography and Cryo-EM.
Structure, 14, 2006
2FXV
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BU of 2fxv by Molmil
Bacillus subtilis Xanthine Phosphoribosyltransferase in Complex with Guanosine 5'-monophosphate (GMP)
Descriptor: GLYCEROL, GUANOSINE-5'-MONOPHOSPHATE, Xanthine phosphoribosyltransferase
Authors:Arent, S, Kadziola, A, Larsen, S, Neuhard, J, Jensen, K.F.
Deposit date:2006-02-06
Release date:2006-06-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Extraordinary Specificity of Xanthine Phosphoribosyltransferase from Bacillus subtilis Elucidated by Reaction Kinetics, Ligand Binding, and Crystallography
Biochemistry, 45, 2006
2FGT
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BU of 2fgt by Molmil
Crystal Structure of YycH from Bacillus subtilis
Descriptor: Two-component system yycF/yycG regulatory protein yycH
Authors:Szurmant, H, Zhao, H, Mohan, M.A, James, H.A, Varughese, K.I.
Deposit date:2005-12-22
Release date:2006-04-25
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of YycH involved in the regulation of the essential YycFG two-component system in Bacillus subtilis reveals a novel tertiary structure.
Protein Sci., 15, 2006
2FF0
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BU of 2ff0 by Molmil
Solution Structure of Steroidogenic Factor 1 DNA Binding Domain Bound to its Target Sequence in the Inhibin alpha-subunit Promoter
Descriptor: CTGTGGCCCTGAGCC, GGCTCAGGGCCACAG, Steroidogenic factor 1, ...
Authors:Little, T.H, Zhang, Y, Matulis, C.K, Weck, J, Zhang, Z, Ramachandran, A, Mayo, K.E, Radhakrishnan, I.
Deposit date:2005-12-17
Release date:2006-04-11
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Sequence-specific deoxyribonucleic Acid (DNA) recognition by steroidogenic factor 1: a helix at the carboxy terminus of the DNA binding domain is necessary for complex stability.
Mol.Endocrinol., 20, 2006
2FLQ
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BU of 2flq by Molmil
Crystal Structure of Nitric Oxide Synthase from Geobacillus Stearothermophilus (ATCC 12980) complexed with L-arginine
Descriptor: ARGININE, Nitric Oxide Synthase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sudhamsu, J, Crane, B.R.
Deposit date:2006-01-06
Release date:2006-01-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure and Reactivity of a Thermostable Prokaryotic Nitric-oxide Synthase That Forms a Long-lived Oxy-Heme Complex.
J.Biol.Chem., 281, 2006
1FSP
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BU of 1fsp by Molmil
NMR SOLUTION STRUCTURE OF BACILLUS SUBTILIS SPO0F PROTEIN, 20 STRUCTURES
Descriptor: STAGE 0 SPORULATION PROTEIN F
Authors:Feher, V.A, Skelton, N.J, Dahlquist, F.W, Cavanagh, J.
Deposit date:1997-06-05
Release date:1997-12-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:High-resolution NMR structure and backbone dynamics of the Bacillus subtilis response regulator, Spo0F: implications for phosphorylation and molecular recognition.
Biochemistry, 36, 1997
2GLZ
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BU of 2glz by Molmil
Crystal structure of a formylmethanofuran dehydrogenase subunit e-like protein (dhaf_2992) from desulfitobacterium hafniense dcb-2 at 1.45 A resolution
Descriptor: 1,2-ETHANEDIOL, NICKEL (II) ION, ZINC ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-04-05
Release date:2006-04-18
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved alpha+beta core domain and an auxiliary C-terminal treble-clef zinc finger.
Acta Crystallogr.,Sect.F, 66, 2010
2MJR
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BU of 2mjr by Molmil
Anoplin R5W structure in DPC micelles
Descriptor: Anoplin, UNKNOWN ATOM OR ION, dodecyl 2-(trimethylammonio)ethyl phosphate
Authors:Uggerhoej, L, Poulsen, T.J, Wimmer, R.
Deposit date:2014-01-16
Release date:2014-12-03
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:Rational Design of Alpha-Helical Antimicrobial Peptides: Do's and Don'ts.
Chembiochem, 16, 2015
1CSS
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BU of 1css by Molmil
ALPHA-FLUORO ACID AND ALPHA-FLUORO AMIDE ANALOGS OF ACETYL-COA AS INHIBITORS OF OF CITRATE SYNTHASE: EFFECT OF PKA MATCHING ON BINDING AFFINITY AND HYDROGEN BOND LENGTH
Descriptor: ALPHA-FLUORO-CARBOXYMETHYLDETHIA COENZYME A COMPLEX, CITRATE SYNTHASE, OXALOACETATE ION
Authors:Usher, K.C, Remington, S.J.
Deposit date:1995-08-04
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:alpha-Fluoro acid and alpha-fluoro amide analogs of acetyl-CoA as inhibitors of citrate synthase: effect of pKa matching on binding affinity and hydrogen bond length.
Biochemistry, 34, 1995
1VC8
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BU of 1vc8 by Molmil
Crystal Structure of a T.thermophilus HB8 Ap6A Hydrolase Ndx1-Ap6A Complex
Descriptor: ADENOSINE-5'-PENTAPHOSPHATE, Ndx1
Authors:Iwai, T, Nakagawa, N, Kuramitsu, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-05
Release date:2005-04-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Nudix Protein Ndx1 from Thermus thermophilus HB8 in binary complex with diadenosine hexaphosphate
To be Published
2GSC
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BU of 2gsc by Molmil
Crystal Structure of the Conserved Hypothetical Cytosolic Protein Xcc0516 from Xanthomonas campestris
Descriptor: Putative uncharacterized protein XCC0516
Authors:Lin, L.Y, Ching, C.L, Chin, K.H, Chou, S.H, Chan, N.L.
Deposit date:2006-04-26
Release date:2006-10-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles.
Proteins, 65, 2006
2MJQ
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BU of 2mjq by Molmil
Structure of antimicrobial peptide anoplin in DPC micelles
Descriptor: Anoplin, UNKNOWN ATOM OR ION, dodecyl 2-(trimethylammonio)ethyl phosphate
Authors:Uggerhoej, L, Poulsen, T.J, Wimmer, R.
Deposit date:2014-01-16
Release date:2014-12-03
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Rational Design of Alpha-Helical Antimicrobial Peptides: Do's and Don'ts.
Chembiochem, 16, 2015
2MUS
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BU of 2mus by Molmil
HADDOCK calculated model of LIN5001 bound to the HET-s amyloid
Descriptor: 3''',4'-bis(carboxymethyl)-2,2':5',2'':5'',2''':5''',2''''-quinquethiophene-5,5''''-dicarboxylic acid, Heterokaryon incompatibility protein s
Authors:Hermann, U.S, Schuetz, A.K, Shirani, H, Saban, D, Nuvolone, M, Huang, D.H, Li, B, Ballmer, B, Aslund, A.K.O, Mason, J.J, Rushing, E, Budka, H, Hammarstrom, P, Bockmann, A, Caflisch, A, Meier, B.H, Nilsson, P.K.R, Hornemann, S, Aguzzi, A.
Deposit date:2014-09-16
Release date:2017-02-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure-based drug design identifies polythiophenes as antiprion compounds.
Sci Transl Med, 7, 2015
1C48
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BU of 1c48 by Molmil
MUTATED SHIGA-LIKE TOXIN B SUBUNIT (G62T)
Descriptor: PROTEIN (SHIGA-LIKE TOXIN I B SUBUNIT)
Authors:Ling, H, Bast, D, Brunton, J.L, Read, R.J.
Deposit date:1999-08-11
Release date:2000-08-16
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Identification of the Primary Receptor Binding Site of Shiga-Like Toxin B Subunits: Structures of Mutated Shiga-Like Toxin I B-Pentamer with and without Bound Carbohydrate
To be Published
1C4Q
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BU of 1c4q by Molmil
MUTATED SHIGA-LIKE TOXIN B SUBUNIT (F30A/W34A) COMPLEXED WITH RECEPTOR GB3 ANALOGUE
Descriptor: PROTEIN (SHIGA-LIKE TOXIN I SUBUNIT B), alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Ling, H, Brunton, J.L, Read, R.J.
Deposit date:1999-08-31
Release date:2000-09-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Identification of the Primary Receptor Binding Site of Shiga-Like Toxin B Subunits: Structures of Mutated Shiga-Like Toxin I B-Pentamer with and without Bound Carbohydrate
To be Published
2CJH
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BU of 2cjh by Molmil
Lysine aminotransferase from M. tuberculosis in the internal aldimine form with bound substrate 2-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, L-LYSINE-EPSILON AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Tripathi, S.M, Ramachandran, R.
Deposit date:2006-04-03
Release date:2006-08-14
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Direct Evidence for a Glutamate Switch Necessary for Substrate Recognition: Crystal Structures of Lysine Epsilon-Aminotransferase (Rv3290C) from Mycobacterium Tuberculosis H37Rv.
J.Mol.Biol., 362, 2006
2MJT
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BU of 2mjt by Molmil
Anoplin R5F T8W in DPC micelles
Descriptor: Anoplin, UNKNOWN ATOM OR ION, dodecyl 2-(trimethylammonio)ethyl phosphate
Authors:Uggerhoej, L, Poulsen, T.J, Wimmer, R.
Deposit date:2014-01-16
Release date:2014-12-03
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Rational Design of Alpha-Helical Antimicrobial Peptides: Do's and Don'ts.
Chembiochem, 16, 2015
2GLQ
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BU of 2glq by Molmil
X-ray structure of human alkaline phosphatase in complex with strontium
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Alkaline phosphatase, placental type, ...
Authors:Llinas, P, Masella, M, Stigbrand, T, Menez, A, Stura, E.A, Le Du, M.H.
Deposit date:2006-04-05
Release date:2006-04-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural studies of human alkaline phosphatase in complex with strontium: Implication for its secondary effect in bones.
Protein Sci., 15, 2006
2MIE
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BU of 2mie by Molmil
Solution structure of the CLAVATA encoded peptide of Arabidopsis thaliana - AtCLE44
Descriptor: CLAVATA3/ESR (CLE)-related protein 44
Authors:Bobay, B.G, DiGennaro, P.M, Bird, D.M.
Deposit date:2013-12-13
Release date:2014-12-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Inferring function of CLE peptides from high resolution tertiary structures
To be Published
2EGH
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BU of 2egh by Molmil
Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase complexed with a magnesium ion, NADPH and fosmidomycin
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID, MAGNESIUM ION, ...
Authors:Yajima, S, Hara, K, Iino, D, Sasaki, Y, Kuzuyama, T, Seto, H.
Deposit date:2007-03-01
Release date:2007-06-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase in a quaternary complex with a magnesium ion, NADPH and the antimalarial drug fosmidomycin
Acta Crystallogr.,Sect.F, 63, 2007
2E4E
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BU of 2e4e by Molmil
NMR structure of D4P/K7G mutant of GPM12
Descriptor: GPM12
Authors:Terada, T, Satoh, D, Mikawa, T, Ito, Y, Shimizu, K.
Deposit date:2006-12-06
Release date:2008-02-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Understanding the roles of amino acid residues in tertiary structure formation of chignolin by using molecular dynamics simulation
To be Published
2E1X
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BU of 2e1x by Molmil
NMR structure of the HIV-2 nucleocapsid protein
Descriptor: Gag-Pol polyprotein (Pr160Gag-Pol), ZINC ION
Authors:Matsui, T, Kodera, Y, Miyauchi, E, Tanaka, H, Endoh, H, Komatsu, H, Tanaka, T, Kohno, T, Maeda, T.
Deposit date:2006-11-03
Release date:2007-06-05
Last modified:2024-11-13
Method:SOLUTION NMR
Cite:Structural role of the secondary active domain of HIV-2 NCp8 in multi-functionality
Biochem.Biophys.Res.Commun., 358, 2007
2GVI
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BU of 2gvi by Molmil
Crystal structure of a putative formylmethanofuran dehydrogenase subunit e (ta1109) from thermoplasma acidophilum at 1.87 A resolution
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, UNKNOWN LIGAND, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-05-02
Release date:2006-06-13
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved alpha+beta core domain and an auxiliary C-terminal treble-clef zinc finger.
Acta Crystallogr.,Sect.F, 66, 2010

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