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3EEY	CRYSTAL STRUCTURE OF PUTATIVE RRNA-METHYLASE FROM Clostridium thermocellum Descriptor: GLYCEROL, Putative rRNA methylase, S-ADENOSYLMETHIONINE, ... Authors: Patskovsky, Y, Ramagopal, U.A, Toro, R, Rutter, M, Hu, S, Bain, K, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2008-09-06 Release date: 2008-09-16 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure of Rrna-Methylase from Clostridium Thermocellum To be Published
2RRC	Solution Structure of RNA aptamer against AML1 Runt domain Descriptor: 5'-R(P*GP*GP*AP*CP*CP*CP*(AP7)P*CP*CP*AP*CP*GP*GP*CP*GP*AP*GP*GP*UP*CP*CP*A)-3' Authors: Nomura, Y, Fujiwara, K, Chiba, M, Fukunaga, J, Tanaka, Y, Iibuchi, H, Tanaka, T, Nakamura, Y, Kawai, G, Kozu, T, Sakamoto, T. Deposit date: 2010-06-23 Release date: 2011-06-29 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A novel high affinity RNA motif that mimics DNA in AML1 Runt domain binding To be Published
4Y7T	Structural analysis of MurU Descriptor: GLYCEROL, Nucleotidyl transferase, SULFATE ION Authors: Renner-Schneck, M.G, Stehle, T. Deposit date: 2015-02-16 Release date: 2015-03-18 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of the N-Acetylmuramic Acid alpha-1-Phosphate (MurNAc-alpha 1-P) Uridylyltransferase MurU, a Minimal Sugar Nucleotidyltransferase and Potential Drug Target Enzyme in Gram-negative Pathogens. J.Biol.Chem., 290, 2015
3CP2	Crystal structure of GidA from E. coli Descriptor: SULFATE ION, tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA Authors: Scrima, A, Meyer, S, Versees, W, Wittinghofer, A. Deposit date: 2008-03-30 Release date: 2008-06-24 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structures of the conserved tRNA-modifying enzyme GidA: implications for its interaction with MnmE and substrate J.Mol.Biol., 380, 2008
4Y7U	Structural analysis of MurU Descriptor: 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, GLYCEROL, ... Authors: Renner-Schneck, M.G, Stehle, T. Deposit date: 2015-02-16 Release date: 2015-03-18 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of the N-Acetylmuramic Acid alpha-1-Phosphate (MurNAc-alpha 1-P) Uridylyltransferase MurU, a Minimal Sugar Nucleotidyltransferase and Potential Drug Target Enzyme in Gram-negative Pathogens. J.Biol.Chem., 290, 2015
4Y7V	Structural analysis of MurU Descriptor: 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, GLYCEROL, IMIDODIPHOSPHORIC ACID, ... Authors: Renner-Schneck, M.G, Stehle, T. Deposit date: 2015-02-16 Release date: 2015-03-18 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of the N-Acetylmuramic Acid alpha-1-Phosphate (MurNAc-alpha 1-P) Uridylyltransferase MurU, a Minimal Sugar Nucleotidyltransferase and Potential Drug Target Enzyme in Gram-negative Pathogens. J.Biol.Chem., 290, 2015
8IU7	Structure of Staphylococcus aureus NrnA (Pde2) in complex with Mg2+ Descriptor: Bifunctional oligoribonuclease and PAP phosphatase NrnA, MAGNESIUM ION Authors: Cheng, K, Wang, Y. Deposit date: 2023-03-23 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Structure of Staphylococcus aureus NrnA in complex with Mg2+. To Be Published
3SGL	The crystal structure of MnmC from Yersinia pestis bound with FAD and SAM Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, S-ADENOSYLMETHIONINE, ... Authors: Kim, J, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC) Deposit date: 2011-06-15 Release date: 2011-07-06 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC. Bmc Struct.Biol., 13, 2013
4UZE	R66A mutant of FAD synthetase from Corynebacterium ammoniagenes Descriptor: PYROPHOSPHATE, RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF, SULFATE ION Authors: Martinez-Julvez, M, Herguedas, B, Milagros, M. Deposit date: 2014-09-05 Release date: 2015-04-08 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Quaternary Organization in a Bifunctional Prokaryotic Fad Synthetase: Involvement of an Arginine at its Adenylyltransferase Module on the Riboflavin Kinase Activity. Biochim.Biophys.Acta, 1854, 2015
3FTM	Class II ligase ribozyme product-template duplex, structure 1 Descriptor: 5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*CP*A)-3', 5'-R(*GP*UP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3', MAGNESIUM ION, ... Authors: Pitt, J.N, Ferre-D'Amare, A.R. Deposit date: 2009-01-13 Release date: 2009-02-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure-guided engineering of the regioselectivity of RNA ligase ribozymes. J.Am.Chem.Soc., 131, 2009
2CFA	Structure of viral flavin-dependant thymidylate synthase ThyX Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, THYMIDYLATE SYNTHASE Authors: Graziani, S, Bernauer, J, Skouloubris, S, Graille, M, Zhou, C.-Z, Marchand, C, Decottignies, P, van Tilbeurgh, H, Myllykallio, H, Liebl, U. Deposit date: 2006-02-17 Release date: 2006-05-16 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Catalytic Mechanism and Structure of Viral Flavin-Dependent Thymidylate Synthase Thyx. J.Biol.Chem., 281, 2006
3FS0	Class II ligase ribozyme product-template duplex, structure 2 Descriptor: 5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*C)-3', 5'-R(*GP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3', MAGNESIUM ION Authors: Pitt, J.N, Ferre-D'Amare, A.R. Deposit date: 2009-01-08 Release date: 2009-02-24 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure-guided engineering of the regioselectivity of RNA ligase ribozymes. J.Am.Chem.Soc., 131, 2009
3E5Y	Crystal structure of TrmH family RNA methyltransferase from Burkholderia pseudomallei Descriptor: TrmH family RNA methyltransferase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2008-08-14 Release date: 2008-08-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of TrmH family RNA methyltransferase from Burkholderia pseudomallei To be Published
5WT2	NifS from Helicobacter pylori Descriptor: CHLORIDE ION, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, ... Authors: Fujishiro, T, Takahashi, Y. Deposit date: 2016-12-09 Release date: 2017-12-13 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.301 Å) Cite: Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J., 2019
1FSX	THE X-RAY STRUCTURE DETERMINATION OF BOVINE CARBONMONOXY HB AT 2.1 A RESOLUTION AND ITS RELATIONSHIP TO THE QUATERNARY STRUCTURE OF OTHER HB CRYSTAL FORMS Descriptor: CARBON MONOXIDE, HEMOGLOBIN ALPHA CHAIN, HEMOGLOBIN BETA CHAIN, ... Authors: Safo, M.K, Abraham, D.J. Deposit date: 2000-09-11 Release date: 2001-06-06 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The X-ray structure determination of bovine carbonmonoxy hemoglobin at 2.1 A resoultion and its relationship to the quaternary structures of other hemoglobin crystal froms. Protein Sci., 10, 2001
5OXS	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R5 oligosaccharide Descriptor: CALCIUM ION, Pulmonary surfactant-associated protein D, alpha-D-glucopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2017-09-07 Release date: 2018-06-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
7QCE	Crystal structure of an atypical PHD finger of VIN3 Descriptor: DI(HYDROXYETHYL)ETHER, VIN3 (Protein VERNALIZATION INSENSITIVE 3), ZINC ION Authors: Franco-Echevarria, E, Fiedler, M, Dean, C, Bienz, M. Deposit date: 2021-11-23 Release date: 2022-11-16 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Plant vernalization proteins contain unusual PHD superdomains without histone H3 binding activity. J.Biol.Chem., 298, 2022
2J3K	Crystal structure of Arabidopsis thaliana Double Bond Reductase (AT5G16970)-Ternary Complex II Descriptor: (2E,4R)-4-HYDROXYNON-2-ENAL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-dependent oxidoreductase 2-alkenal reductase Authors: Youn, B, Kim, S.J, Moinuddin, S.G, Lee, C, Bedgar, D.L, Harper, A.R, Davin, L.B, Lewis, N.G, Kang, C. Deposit date: 2006-08-22 Release date: 2006-10-05 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mechanistic and structural studies of apoform, binary, and ternary complexes of the Arabidopsis alkenal double bond reductase At5g16970. J. Biol. Chem., 281, 2006
2J3J	Crystal structure of Arabidopsis thaliana Double Bond Reductase (AT5G16970)-Ternary Complex I Descriptor: 4'-HYDROXYCINNAMIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-dependent oxidoreductase 2-alkenal reductase Authors: Youn, B, Kim, S.J, Moinuddin, S.G, Lee, C, Bedgar, D.L, Harper, A.R, Davin, L.B, Lewis, N.G, Kang, C. Deposit date: 2006-08-21 Release date: 2006-10-05 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mechanistic and structural studies of apoform, binary, and ternary complexes of the Arabidopsis alkenal double bond reductase At5g16970. J. Biol. Chem., 281, 2006
1SR5	ANTITHROMBIN-ANHYDROTHROMBIN-HEPARIN TERNARY COMPLEX STRUCTURE Descriptor: 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-deoxy-2,3,6-tri-O-methyl-alpha-D-xylo-hexopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3-di-O-methyl-6-O-sulfo-alpha-D-glucopyranose-(1-4)-(2R,3R,4S,5S,6S)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-(2R,3R,4S,5S,6R)-6-(dihydroxymethyl)-3,4-dimethoxytetrahydro-2H-pyran-2,5-diol-(1-4)-1,5-anhydro-3-O-methyl-2,6-di-O-sulfo-D-glucitol, ... Authors: Dementiev, A, Petitou, M, Gettins, P.G. Deposit date: 2004-03-22 Release date: 2004-08-17 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.1 Å) Cite: The ternary complex of antithrombin-anhydrothrombin-heparin reveals the basis of inhibitor specificity. Nat.Struct.Mol.Biol., 11, 2004
1914	SIGNAL RECOGNITION PARTICLE ALU RNA BINDING HETERODIMER, SRP9/14 Descriptor: BETA-MERCAPTOETHANOL, PHOSPHATE ION, SIGNAL RECOGNITION PARTICLE 9/14 FUSION PROTEIN Authors: Birse, D, Kapp, U, Strub, K, Cusack, S, Aberg, A. Deposit date: 1997-11-13 Release date: 1998-12-30 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.53 Å) Cite: The crystal structure of the signal recognition particle Alu RNA binding heterodimer, SRP9/14. EMBO J., 16, 1997
5OXR	Crystal structure of human lung surfactant protein D trimeric fragment with bound ligand Salmonella enterica Minnesota R7 oligosaccharide Descriptor: CALCIUM ION, L-glycero-alpha-D-manno-heptopyranose-(1-3)-L-glycero-alpha-D-manno-heptopyranose-(1-5)-4,7-anhydro-3-deoxy-D-gluco-oct-2-ulosonic acid, Pulmonary surfactant-associated protein D Authors: Shrive, A.K, Greenhough, T.J. Deposit date: 2017-09-07 Release date: 2018-06-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural definition of hSP-D recognition of Salmonella enterica LPS inner core oligosaccharides reveals alternative binding modes for the same LPS. PLoS ONE, 13, 2018
1H8P	Bull seminal plasma PDC-109 fibronectin type II module Descriptor: PHOSPHOCHOLINE, SEMINAL PLASMA PROTEIN PDC-109 Authors: Wah, D.A, Fernandez-Tornero, C, Calvete, J.J, Romero, A. Deposit date: 2001-02-14 Release date: 2002-04-12 Last modified: 2019-07-24 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Sperm Coating Mechanism from the 1.8 A Crystal Structure of Pdc-109-Phosphorylcholine Complex Structure, 10, 2002
5F7U	Cycloalternan-forming enzyme from Listeria monocytogenes in complex with pentasaccharide substrate Descriptor: Cycloalternan-forming enzyme, MAGNESIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... Authors: Light, S.H, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2015-12-08 Release date: 2016-09-21 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure to function of an alpha-glucan metabolic pathway that promotes Listeria monocytogenes pathogenesis. Nat Microbiol, 2, 2016
5ZS9	SufS from Bacillus subtilis in the resting state Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER Authors: Nakamura, R, Fujishiro, T, Takahashi, Y. Deposit date: 2018-04-28 Release date: 2019-05-01 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J., 287, 2020

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