PDB: 2055 resultsInfo pagesStatus searchChemie searchBIRD

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7A89	rsGreen0.7-K206A-F145Q in the green-on state Descriptor: Green fluorescent protein Authors: De Zitter, E, Dedecker, P, Van Meervelt, L. Deposit date: 2020-08-30 Release date: 2021-02-17 Last modified: 2021-05-05 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*. Angew.Chem.Int.Ed.Engl., 60, 2021
8FHV	Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions Descriptor: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
1EME	GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT Descriptor: GREEN FLUORESCENT PROTEIN Authors: Palm, G, Zdanov, A, Wlodawer, A. Deposit date: 1997-03-31 Release date: 1997-08-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The structural basis for spectral variations in green fluorescent protein. Nat.Struct.Biol., 4, 1997
4ZVP	Caspase-7 Variant 2 (V2) with reprogrammed substrate specificity due to Y230V/W232M/Q276C substitutions bound to DEVD inhibitor. Descriptor: Caspase-7, Peptide ACE-ASP-GLU-VAL-ASA Authors: Hill, M.E, MacPherson, D.J, Hardy, J.A. Deposit date: 2015-05-18 Release date: 2016-04-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Reprogramming Caspase-7 Specificity by Regio-Specific Mutations and Selection Provides Alternate Solutions for Substrate Recognition. Acs Chem.Biol., 11, 2016
4ZVS	Caspase-7 Variant 1 (V1) with reprogrammed substrate specificity due to Y230A/W232M/S234N substitutions, bound to DEVD inhibitor. Descriptor: Caspase-7, DEVD inhibitor Authors: MacPherson, D.J, Hill, M.E, Hardy, J.A. Deposit date: 2015-05-18 Release date: 2016-04-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Reprogramming Caspase-7 Specificity by Regio-Specific Mutations and Selection Provides Alternate Solutions for Substrate Recognition. Acs Chem.Biol., 11, 2016
4W7C	Crystal Structure of Full-Length Split GFP Mutant D21H/K26C Disulfide and Metal-Mediated Dimer, C 2 Space Group Descriptor: COPPER (II) ION, fluorescent protein D21H/K26C Authors: Leibly, D.J, Waldo, G.S, Yeates, T.O. Deposit date: 2014-08-21 Release date: 2015-03-04 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A Suite of Engineered GFP Molecules for Oligomeric Scaffolding. Structure, 23, 2015
4ZVQ	Caspase-7 Variant 2 (V2) with reprogrammed substrate specificity due to Y230V/W232M/Q276C substitutions bound to VEID inhibitor. Descriptor: Caspase-7, Peptide ACE-VAL-GLU-ILE-ASA Authors: Hill, M.E, MacPherson, D.J, Hardy, J.A. Deposit date: 2015-05-18 Release date: 2016-04-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Reprogramming Caspase-7 Specificity by Regio-Specific Mutations and Selection Provides Alternate Solutions for Substrate Recognition. Acs Chem.Biol., 11, 2016
4IK5	High resolution structure of Delta-REST-GCaMP3 Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein Authors: Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G. Deposit date: 2012-12-25 Release date: 2014-01-29 Last modified: 2017-06-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement. Protein Cell, 4, 2013
5MAK	GFP-binding DARPin fusion gc_R7 Descriptor: CITRIC ACID, Green fluorescent protein, R7 Authors: Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A. Deposit date: 2016-11-03 Release date: 2017-11-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity. Sci Rep, 7, 2017
7BYL	Cryo-EM structure of human KCNQ4 Descriptor: Calmodulin-3, Green fluorescent protein,Potassium voltage-gated channel subfamily KQT member 4, POTASSIUM ION, ... Authors: Shen, H, Li, T, Yue, Z. Deposit date: 2020-04-23 Release date: 2020-12-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Structural Basis for the Modulation of Human KCNQ4 by Small-Molecule Drugs. Mol.Cell, 81, 2021
1XA9	Crystal structure of yellow fluorescent protein zFP538 K66M green mutant Descriptor: BETA-MERCAPTOETHANOL, fluorescent protein FP538 Authors: Remington, S.J, Wachter, R.M, Yarbrough, D.K, Branchaud, B, Anderson, D.C, Kallio, K, Lukyanov, K.A. Deposit date: 2004-08-25 Release date: 2005-02-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: zFP538, a yellow-fluorescent protein from Zoanthus, contains a novel three-ring chromophore. Biochemistry, 44, 2005
6SXL	Crystal structure of CrtE Descriptor: Geranylgeranyl pyrophosphate synthase, PHOSPHATE ION Authors: Feng, Y, Morgan, R.M.L, Nixon, P.J. Deposit date: 2019-09-26 Release date: 2020-06-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structure of Geranylgeranyl Pyrophosphate Synthase (CrtE) Involved in Cyanobacterial Terpenoid Biosynthesis. Front Plant Sci, 11, 2020
1YFP	STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP Descriptor: YELLOW FLUORESCENT PROTEIN Authors: Wachter, R.M, Elsliger, M.-A, Kallio, K, Hanson, G.T, Remington, S.J. Deposit date: 1998-08-28 Release date: 1998-10-28 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein. Structure, 6, 1998
5GJP	Crystal structure of SrLDC in complex with PLP and Cadaverine Descriptor: GLYCEROL, Lysine/ornithine decarboxylase, MAGNESIUM ION, ... Authors: Sagong, H.-Y, Kim, K.-J. Deposit date: 2016-07-01 Release date: 2016-11-23 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structure and Pyridoxal 5-Phosphate Binding Property of Lysine Decarboxylase from Selenomonas ruminantium PLoS ONE, 11, 2016
6ZC5	Human Adenovirus serotype D10 FiberKnob protein Descriptor: Fiber Authors: Baker, A.T, Mundy, R.M, Rizkallah, P.J, Parker, A.L. Deposit date: 2020-06-09 Release date: 2021-06-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Development of a low-seroprevalence, alpha v beta 6 integrin-selective virotherapy based on human adenovirus type 10. Mol Ther Oncolytics, 25, 2022
8SCB	Terminating ribosome with SRI-41315 Descriptor: (2S,4aS)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3H,4aH)-dione, 18S_rRNA, 28S_rRNA, ... Authors: Yip, M.C.J, Coelho, J.P.L, Oltion, K, Tauton, J, Shao, S. Deposit date: 2023-04-05 Release date: 2023-12-27 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: The eRF1 degrader SRI-41315 acts as a molecular glue at the ribosomal decoding center. Nat.Chem.Biol., 20, 2024
7ZUX	Collided ribosome in a disome unit from S. cerevisiae Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Best, K.M, Ikeuchi, K, Kater, L, Best, D.M, Musial, J, Matsuo, Y, Berninghausen, O, Becker, T, Inada, T, Beckmann, R. Deposit date: 2022-05-13 Release date: 2023-02-22 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Structural basis for clearing of ribosome collisions by the RQT complex. Nat Commun, 14, 2023
7XNY	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Cheng, J, Beckmann, R. Deposit date: 2022-04-30 Release date: 2023-04-05 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia. Cancer Discov, 13, 2023
4X8H	Crystal structure of E. coli Adenylate kinase P177A mutant Descriptor: Adenylate kinase Authors: Sauer-Eriksson, A.E, Kovermann, M, Aden, J, Grundstrom, C, Wolf-Watz, M, Sauer, U.H. Deposit date: 2014-12-10 Release date: 2015-07-22 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for catalytically restrictive dynamics of a high-energy enzyme state. Nat Commun, 6, 2015
8JDJ	Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2023-05-14 Release date: 2023-12-06 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
1YHG	Uncyclized precursor structure of S65G Y66S V68G GFP variant Descriptor: green fluorescent protein Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2005-01-07 Release date: 2005-02-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Understanding GFP Chromophore Biosynthesis: Controlling Backbone Cyclization and Modifying Post-translational Chemistry. Biochemistry, 44, 2005
8FHX	Structure of Lettuce aptamer bound to DFHBI-1T Descriptor: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
4RYW	Crystal structure of the photoconverted green fluorescent protein NowGFP_conv (the variant of cyan Cerulean) at pH 7.0 Descriptor: GLYCEROL, NowGFP_conv Authors: Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V. Deposit date: 2014-12-17 Release date: 2015-09-02 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of the green fluorescent protein NowGFP with an anionic tryptophan-based chromophore. Acta Crystallogr.,Sect.D, 71, 2015
5DPJ	sfGFP double mutant - 133/149 p-ethynyl-L-phenylalanine Descriptor: Green fluorescent protein Authors: Dippel, A.B, Olenginski, G.M, Maurici, N, Liskov, M.T, Brewer, S.H, Phillips-Piro, C.M. Deposit date: 2015-09-12 Release date: 2016-02-03 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Probing the effectiveness of spectroscopic reporter unnatural amino acids: a structural study. Acta Crystallogr D Struct Biol, 72, 2016
1HMY	CRYSTAL STRUCTURE OF THE HHAI DNA METHYLTRANSFERASE COMPLEXED WITH S-ADENOSYL-L-METHIONINE Descriptor: HaeIII METHYLTRANSFERASE, S-ADENOSYLMETHIONINE Authors: Cheng, X. Deposit date: 1993-08-05 Release date: 1993-10-31 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L-methionine. Cell(Cambridge,Mass.), 74, 1993

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