Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2GRY
DownloadVisualize
BU of 2gry by Molmil
Crystal structure of the human KIF2 motor domain in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF2, MAGNESIUM ION, ...
Authors:Wang, J, Shen, Y, Tempel, W, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2006-04-25
Release date:2006-05-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of the human KIF2 motor domain in complex with ADP
to be published
2PN5
DownloadVisualize
BU of 2pn5 by Molmil
Crystal Structure of TEP1r
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, ...
Authors:Baxter, R.H.G.
Deposit date:2007-04-23
Release date:2007-07-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.698 Å)
Cite:Structural basis for conserved complement factor-like function in the antimalarial protein TEP1
Proc.Natl.Acad.Sci.Usa, 104, 2007
2PHZ
DownloadVisualize
BU of 2phz by Molmil
Crystal structure of Iron-uptake system-binding protein FeuA from Bacillus subtilis. Northeast Structural Genomics target SR580.
Descriptor: Iron-uptake system-binding protein
Authors:Benach, J, Neely, H, Seetharaman, J, Chen, C.X, Cunningham, K, Ma, L.-C, Janjua, H, Xiao, R, Baran, M, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2007-04-12
Release date:2007-04-24
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of Iron-uptake system-binding protein FeuA from Bacillus subtilis.
To be Published
3Q0H
DownloadVisualize
BU of 3q0h by Molmil
Structure of T-cell immunoreceptor with immunoglobulin and ITIM domains (TIGIT)
Descriptor: T cell immunoreceptor with Ig and ITIM domains
Authors:Ramagopal, U.A, Guo, H, Samanta, D, Nathenson, S.G, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2010-12-15
Release date:2011-02-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of T-cell immunoreceptor with immunoglobulin and ITIM domains (TIGIT)
To be published
3PJ5
DownloadVisualize
BU of 3pj5 by Molmil
Crystal structure of far-red fluorescent protein Katushka crystallized at pH 5.0
Descriptor: Red fluorescent protein eqFP578, SULFATE ION
Authors:Pletnev, S, Pletneva, N.V, Pletnev, V.Z.
Deposit date:2010-11-08
Release date:2011-05-25
Last modified:2012-02-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore.
Protein Sci., 20, 2011
2GXG
DownloadVisualize
BU of 2gxg by Molmil
Crystal structure of EmrR homolog from hyperthermophilic archaea Sulfolobus tokodaii strain7
Descriptor: 146aa long hypothetical transcriptional regulator
Authors:Miyazono, K, Tsujimura, M, Kawarabayasi, Y, Tanokura, M.
Deposit date:2006-05-08
Release date:2007-03-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of archaeal homolog of multi drug resistance repressor protein, EmrR, from hyperthermophilic archaea Sulfolobus tokodaii strain7
To be Published
2PR9
DownloadVisualize
BU of 2pr9 by Molmil
Mu2 adaptin subunit (AP50) of AP2 adaptor (second domain), complexed with GABAA receptor-gamma2 subunit-derived internalization peptide DEEYGYECL
Descriptor: AP-2 complex subunit mu-1, GABA(A) receptor subunit gamma-2 peptide
Authors:Vahedi-Faridi, A, Haucke, V, Kittler, J.T, Kukhtina, V, Moss, S.J, Saenger, W, Chen, G.-J, Tretter, V, Smith, K, Yan, Z, McAinsh, K, Arancibia-Carcamo, L.
Deposit date:2007-05-04
Release date:2008-03-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Regulation of synaptic inhibition by phospho-dependent binding of the AP2 complex to a YECL motif in the GABAA receptor gamma2 subunit.
Proc.Natl.Acad.Sci.Usa, 105, 2008
4KE8
DownloadVisualize
BU of 4ke8 by Molmil
Crystal structure of Monoglyceride lipase from Bacillus sp. H257 in complex with monopalmitoyl glycerol analogue
Descriptor: Thermostable monoacylglycerol lipase, tetradecyl hydrogen (R)-(3-azidopropyl)phosphonate
Authors:Rengachari, S, Aschauer, P, Gruber, K, Dreveny, I, Oberer, M.
Deposit date:2013-04-25
Release date:2013-09-18
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Conformational plasticity and ligand binding of bacterial monoacylglycerol lipase.
J.Biol.Chem., 288, 2013
3DHP
DownloadVisualize
BU of 3dhp by Molmil
Probing the role of aromatic residues at the secondary saccharide binding sites of human salivary alpha-amylase in substrate hydrolysis and bacterial binding
Descriptor: 4-amino-4,6-dideoxy-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 5-HYDROXYMETHYL-CHONDURITOL, Alpha-amylase 1, ...
Authors:Ragunath, C, Manuel, S.G.A, Sait, H.M, Kasinathan, C.
Deposit date:2008-06-18
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Probing the role of aromatic residues
To be Published
3Q4I
DownloadVisualize
BU of 3q4i by Molmil
Crystal structure of CDP-Chase in complex with Gd3+
Descriptor: GADOLINIUM ION, Phosphohydrolase (MutT/nudix family protein)
Authors:Duong-Ly, K.C, Gabelli, S.B, Amzel, L.M.
Deposit date:2010-12-23
Release date:2011-07-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Nudix Hydrolase CDP-Chase, a CDP-Choline Pyrophosphatase, Is an Asymmetric Dimer with Two Distinct Enzymatic Activities.
J.Bacteriol., 193, 2011
3DBZ
DownloadVisualize
BU of 3dbz by Molmil
human surfactant protein D
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Pulmonary surfactant-associated protein D
Authors:Head, J.F.
Deposit date:2008-06-02
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Interaction of recombinant surfactant protein D with lipopolysaccharide: conformation and orientation of bound protein by IRRAS and simulations.
Biochemistry, 47, 2008
2PS3
DownloadVisualize
BU of 2ps3 by Molmil
Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli
Descriptor: High-affinity zinc uptake system protein znuA
Authors:Yatsunyk, L.A, Kim, L.R, Vorontsov, I.I, Rosenzweig, A.C.
Deposit date:2007-05-04
Release date:2007-06-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Structure and metal binding properties of ZnuA, a periplasmic zinc transporter from Escherichia coli.
J.Biol.Inorg.Chem., 13, 2008
4KF9
DownloadVisualize
BU of 4kf9 by Molmil
Crystal structure of a glutathione transferase family member from ralstonia solanacearum, target efi-501780, with bound gsh coordinated to a zinc ion, ordered active site
Descriptor: ACETATE ION, GLUTATHIONE, Glutathione s-transferase protein, ...
Authors:Vetting, M.W, Toro, R, Bhosle, R, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Washington, E, Scott Glenn, A, Chowdhury, S, Evans, B, Hammonds, J, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Armstrong, R.N, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-04-26
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a glutathione transferase family member from ralstonia solanacearum, target efi-501780, with bound gsh coordinated to a zinc ion, ordered active site
To be Published
2PLY
DownloadVisualize
BU of 2ply by Molmil
Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA.
Descriptor: CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Soler, N, Fourmy, D, Yoshizawa, S.
Deposit date:2007-04-20
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB.
J.Mol.Biol., 370, 2007
3Q51
DownloadVisualize
BU of 3q51 by Molmil
Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state.
Descriptor: MAGNESIUM ION, PREQ1 RIBOSWITCH, SULFATE ION
Authors:Wedekind, J.E, Jenkins, J.L, Krucinska, J.
Deposit date:2010-12-26
Release date:2011-05-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation.
J.Biol.Chem., 286, 2011
2PSS
DownloadVisualize
BU of 2pss by Molmil
The structure of Plasmodium falciparum spermidine synthase in its apo-form
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, GLYCEROL, SULFATE ION, ...
Authors:Dufe, V.T, Qiu, W, Muller, I.B, Hui, R, Walter, R.D, Al-Karadaghi, S, Structural Genomics Consortium (SGC)
Deposit date:2007-05-07
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of Plasmodium falciparum spermidine synthase in complex with the substrate decarboxylated S-adenosylmethionine and the potent inhibitors 4MCHA and AdoDATO.
J.Mol.Biol., 373, 2007
3DI8
DownloadVisualize
BU of 3di8 by Molmil
Crystal structure of bovine pancreatic ribonuclease A variant (V57A)
Descriptor: CHLORIDE ION, Ribonuclease pancreatic, SULFATE ION
Authors:Kurpiewska, K, Font, J, Ribo, M, Vilanova, M, Lewinski, K.
Deposit date:2008-06-20
Release date:2008-07-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystallographic studies of RNase A variants engineered at the most destabilizing positions of the main hydrophobic core: further insight into protein stability
Proteins, 77, 2009
3DCK
DownloadVisualize
BU of 3dck by Molmil
X-ray structure of D25N chemical analogue of HIV-1 protease complexed with ketomethylene isostere inhibitor
Descriptor: (2S)-2-{[(2R,5S)-5-{[(2S,3S)-2-{[(2S,3R)-2-(acetylamino)-3-hydroxybutanoyl]amino}-3-methylpentanoyl]amino}-2-butyl-4-oxononanoyl]amino}-N~1~-[(2S)-1-amino-5-carbamimidamido-1-oxopentan-2-yl]pentanediamide, Chemical analogue HIV-1 protease
Authors:Torbeev, V.Y, Mandal, K, Terechko, V.A, Kent, S.B.H.
Deposit date:2008-06-03
Release date:2008-08-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of chemically synthesized HIV-1 protease and a ketomethylene isostere inhibitor based on the p2/NC cleavage site
Bioorg.Med.Chem.Lett., 18, 2008
2GVY
DownloadVisualize
BU of 2gvy by Molmil
Monoclinic crystal form of Aspergillus niger alpha-amylase in complex with maltose at 1.8 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-amylase A, CALCIUM ION, ...
Authors:Vujicic-Zagar, A, Dijkstra, B.W.
Deposit date:2006-05-03
Release date:2006-08-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Monoclinic crystal form of Aspergillus niger alpha-amylase in complex with maltose at 1.8 angstroms resolution.
ACTA CRYSTALLOGR.,SECT.F, 62, 2006
3DCR
DownloadVisualize
BU of 3dcr by Molmil
X-ray structure of HIV-1 protease and hydrated form of ketomethylene isostere inhibitor
Descriptor: Chemical analogue HIV-1 protease, N~2~-[(2R,5S)-5-({(2S,3S)-2-[(N-acetyl-L-threonyl)amino]-3-methylpent-4-enoyl}amino)-2-butyl-4,4-dihydroxynonanoyl]-L-glutaminyl-L-argininamide
Authors:Torbeev, V.Y, Mandal, K, Terechko, V.A, Kent, S.B.H.
Deposit date:2008-06-04
Release date:2008-08-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of chemically synthesized HIV-1 protease and a ketomethylene isostere inhibitor based on the p2/NC cleavage site
Bioorg.Med.Chem.Lett., 18, 2008
3PGY
DownloadVisualize
BU of 3pgy by Molmil
Serine hydroxymethyltransferase from Staphylococcus aureus, S95P mutant.
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, GLYCINE, ...
Authors:Osipiuk, J, Makowska-Grzyska, M, Kwon, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-11-02
Release date:2010-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Serine hydroxymethyltransferase from Staphylococcus aureus, S95P mutant
To be Published
2EHW
DownloadVisualize
BU of 2ehw by Molmil
Conserved hypothetical proteim (TTHB059) from Thermo thermophilus HB8
Descriptor: Hypothetical protein TTHB059
Authors:Rehse, P.H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-09
Release date:2007-09-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Conserved hypothetical proteim (TTHB059) from Thermo thermophilus HB8
To be Published
4O94
DownloadVisualize
BU of 4o94 by Molmil
Crystal structure of a trap periplasmic solute binding protein from Rhodopseudomonas palustris HaA2 (RPB_3329), Target EFI-510223, with bound succinate
Descriptor: CHLORIDE ION, SUCCINIC ACID, TRAP dicarboxylate transporter DctP subunit
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Sojitra, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-01-01
Release date:2014-01-22
Last modified:2015-02-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
3PNL
DownloadVisualize
BU of 3pnl by Molmil
Crystal Structure of E.coli Dha kinase DhaK-DhaL complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Shi, R, McDonald, L, Matte, A, Cygler, M, Ekiel, I, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2010-11-19
Release date:2011-01-12
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and mechanistic insight into covalent substrate binding by Escherichia coli dihydroxyacetone kinase.
Proc.Natl.Acad.Sci.USA, 108, 2011
4KKN
DownloadVisualize
BU of 4kkn by Molmil
Crystal structure of bovine CTLA-4, PSI-NYSGRC-012704
Descriptor: Cytotoxic T-lymphocyte associated protein 4, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Kumar, P.R, Ahmed, M, Banu, R, Bhosle, R, Bonanno, J, Calarese, D.A, Celikgil, A, Chamala, S, Chan, M.K, Chowdhury, S, Fiser, A, Garforth, S.J, Scott Glenn, A, Hammonds, J, Hillerich, B, Khafizov, K, Lafleur, J, Attonito, J, Love, J.D, Patel, H, Patel, R, Seidel, R.D, Smith, B, Stead, M, Toro, R, Casadevall, A, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Deposit date:2013-05-06
Release date:2013-06-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.253 Å)
Cite:Crystal structure of bovine CTLA-4, PSI-NYSGRC-012704
to be published

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon