PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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8FZH	Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Li, L, Lin, J, Gagnon, M.G. Deposit date: 2023-01-28 Release date: 2024-07-17 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: The ribosome termination complex remodels release factor RF3 and ejects GDP Nat.Struct.Mol.Biol., 2024
8FZE	Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Li, L, Lin, J, Gagnon, M.G. Deposit date: 2023-01-28 Release date: 2024-07-17 Method: ELECTRON MICROSCOPY (3 Å) Cite: The ribosome termination complex remodels release factor RF3 and ejects GDP Nat.Struct.Mol.Biol., 2024
4IUU	Crystal structure of SHH1 SAWADEE domain in complex with H3K9me1 peptide Descriptor: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ... Authors: Du, J, Patel, D.J. Deposit date: 2013-01-21 Release date: 2013-05-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
3R1H	Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Ca2+ bound Descriptor: 5'-R(*UP*CP*CP*AP*GP*UP*A)-3', CALCIUM ION, Class I ligase ribozyme, ... Authors: Shechner, D.M, Bartel, D.P. Deposit date: 2011-03-10 Release date: 2011-08-31 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.15 Å) Cite: The structural basis of RNA-catalyzed RNA polymerization. Nat.Struct.Mol.Biol., 18, 2011
4IUT	crystal structure of SHH1 SAWADEE domain in complex with H3K9me2 peptide Descriptor: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ... Authors: Du, J, Patel, D.J. Deposit date: 2013-01-21 Release date: 2013-05-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
2VNU	Crystal structure of Sc Rrp44 Descriptor: 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP)-3', EXOSOME COMPLEX EXONUCLEASE RRP44, MAGNESIUM ION, ... Authors: Lorentzen, E, Basquin, J, Conti, E. Deposit date: 2008-02-07 Release date: 2008-04-08 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of the Active Subunit of the Yeast Exosome Core, Rrp44: Diverse Modes of Substrate Recruitment in the Rnase II Nuclease Family Mol.Cell, 29, 2008
2YJY	A specific and modular binding code for cytosine recognition in PUF domains Descriptor: 5'-R(*AP*UP*UP*GP*CP*AP*UP*AP*UP*AP)-3', PUMILIO HOMOLOG 1 Authors: Dong, S, Wang, Y, Cassidy-Amstutz, C, Lu, G, Qiu, C, Bigler, R, Jezyk, M, Li, C, Hall, T.M.T, Wang, Z. Deposit date: 2011-05-24 Release date: 2011-06-08 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.598 Å) Cite: Specific and Modular Binding Code for Cytosine Recognition in Pumilio/Fbf (Puf) RNA-Binding Domains. J.Biol.Chem., 286, 2011
1PX5	Crystal structure of the 2'-specific and double-stranded RNA-activated interferon-induced antiviral protein 2'-5'-oligoadenylate synthetase Descriptor: 2'-5'-oligoadenylate synthetase 1, SULFATE ION Authors: Hartmann, R, Justesen, J, Sarkar, S.N, Sen, G.C, Yee, V.C. Deposit date: 2003-07-02 Release date: 2003-11-25 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Crystal structure of the 2'-specific and double-stranded RNA-activated interferon-induced antiviral protein 2'-5'-oligoadenylate synthetase Mol.Cell, 12, 2003
7JLY	Crystal Structure of RNA Binding Protein PG1 Descriptor: ACETATE ION, CALCIUM ION, RNA-binding protein Authors: Musayev, F.N, Scarsdale, J.N, Belvin, B.R, Lewis, J.P. Deposit date: 2020-07-30 Release date: 2021-07-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.73 Å) Cite: High Resolution Structure of RNA Binding Protein PG1 To be published
4AEP	HCV-JFH1 NS5B POLYMERASE STRUCTURE AT 1.8 ANGSTROM Descriptor: PHOSPHATE ION, RNA-DIRECTED RNA POLYMERASE Authors: Caillet-Saguy, C, Bressanelli, S. Deposit date: 2012-01-12 Release date: 2012-05-02 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Two Crucial Early Steps in RNA Synthesis by the Hepatitis C Virus Polymerase Involve a Dual Role of Residue 405. J.Virol., 86, 2012
4AEX	HCV-JFH1 NS5B POLYMERASE STRUCTURE AT 2.4 ANGSTROM in a primitive orthorhombic space group Descriptor: PHOSPHATE ION, RNA-DIRECTED RNA POLYMERASE Authors: Caillet-Saguy, C, Bressanelli, S. Deposit date: 2012-01-12 Release date: 2012-05-02 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.41 Å) Cite: Two Crucial Early Steps in RNA Synthesis by the Hepatitis C Virus Polymerase Involve a Dual Role of Residue 405. J.Virol., 86, 2012
7ELC	Structure of monomeric complex of MACV L bound to Z and 3'-vRNA Descriptor: 3'-vRNA promoter, MANGANESE (II) ION, RING finger protein Z, ... Authors: Xu, X, Peng, R, Peng, Q, Shi, Y. Deposit date: 2021-04-09 Release date: 2021-05-05 Last modified: 2021-07-14 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cryo-EM structures of Lassa and Machupo virus polymerases complexed with cognate regulatory Z proteins identify targets for antivirals. Nat Microbiol, 6, 2021
7ELA	Structure of Lassa virus polymerase in complex with 3'-vRNA and Z mutant (F36A) Descriptor: 3-'vRNA promoter, MANGANESE (II) ION, RING finger protein Z, ... Authors: Xu, X, Peng, R, Peng, Q, Shi, Y. Deposit date: 2021-04-09 Release date: 2021-05-05 Last modified: 2021-07-14 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM structures of Lassa and Machupo virus polymerases complexed with cognate regulatory Z proteins identify targets for antivirals. Nat Microbiol, 6, 2021
8T1I	Atomic model of the mammalian Mediator complex with MED26 subunit Descriptor: Mediator of RNA polymerase II transcription subunit 1, Mediator of RNA polymerase II transcription subunit 10, Mediator of RNA polymerase II transcription subunit 11, ... Authors: Zhao, H, Asturias, F. Deposit date: 2023-06-02 Release date: 2024-06-12 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (4.68 Å) Cite: An IDR-dependent mechanism for nuclear receptor control of Mediator interaction with RNA polymerase II. Mol.Cell, 2024
7EL9	Structure of Machupo virus L polymerase in complex with Z protein and 3'-vRNA (dimeric complex) Descriptor: MANGANESE (II) ION, Machupo virus 3'-vRNA promoter, RING finger protein Z, ... Authors: Peng, R, Xu, X, Peng, Q, Shi, Y. Deposit date: 2021-04-09 Release date: 2021-05-05 Last modified: 2021-07-14 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structures of Lassa and Machupo virus polymerases complexed with cognate regulatory Z proteins identify targets for antivirals. Nat Microbiol, 6, 2021
2E5H	Solution structure of RNA binding domain in Zinc finger CCHC-type and RNA binding motif 1 Descriptor: Zinc finger CCHC-type and RNA-binding motif-containing protein 1 Authors: Iibuchi, H, Tsuda, K, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-12-21 Release date: 2007-06-26 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of RNA binding domain in Zinc finger CCHC-type and RNA binding motif 1 To be Published
1Y14	Crystal structure of yeast subcomplex of Rpb4 and Rpb7 Descriptor: DNA-directed RNA polymerase II 19 kDa polypeptide, DNA-directed RNA polymerase II 32 kDa polypeptide Authors: Armache, K.-J, Mitterweger, S, Meinhart, A, Cramer, P. Deposit date: 2004-11-17 Release date: 2004-12-14 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structures of Complete RNA Polymerase II and Its Subcomplex, Rpb4/7 J.Biol.Chem., 280, 2005
7ZEV	Free form of extended Cyp33-RRM Descriptor: Peptidyl-prolyl cis-trans isomerase E Authors: Blatter, M, Allain, F, Meylan, C. Deposit date: 2022-03-31 Release date: 2022-04-13 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: RNA binding induces an allosteric switch in Cyp33 to repress MLL1-mediated transcription. Sci Adv, 9, 2023
1Z7X	X-ray structure of human ribonuclease inhibitor complexed with ribonuclease I Descriptor: CITRIC ACID, Ribonuclease I, Ribonuclease inhibitor Authors: McCoy, J.G, Johnson, R.J, Raines, R.T, Bitto, E, Bingman, C.A, Wesenberg, G.E, Allard, S.T.M, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG) Deposit date: 2005-03-28 Release date: 2005-06-21 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein. J.Mol.Biol., 368, 2007
4IUR	crystal structure of SHH1 SAWADEE domain in complex with H3K9me3 peptide Descriptor: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ... Authors: Patel, D.J, Du, J. Deposit date: 2013-01-21 Release date: 2013-05-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.501 Å) Cite: Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
4IUV	crystal structure of SHH1 SAWADEE domain in complex with H3K4me1K9me1 peptide Descriptor: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ... Authors: Du, J, Patel, D.J. Deposit date: 2013-01-21 Release date: 2013-05-01 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
5W4A	C. japonica N-domain Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, IMIDAZOLE, ... Authors: Aoki, S.T, Bingman, C.A, Kimble, J. Deposit date: 2017-06-09 Release date: 2018-06-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: C. elegans germ granules require both assembly and localized regulators for mRNA repression. Nat Commun, 12, 2021
3D0P	Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complex Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DCP*DG)-3'), Ribonuclease H, SODIUM ION Authors: Pallan, P.S, Egli, M. Deposit date: 2008-05-02 Release date: 2008-10-07 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Insights into RNA/DNA hybrid recognition and processing by RNase H from the crystal structure of a non-specific enzyme-dsDNA complex. Cell Cycle, 7, 2008
3V8V	Crystal structure of bifunctional methyltransferase YcbY (RlmLK) from Escherichia coli, SAM binding Descriptor: 6-O-octanoyl-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose, Ribosomal RNA large subunit methyltransferase L, S-ADENOSYLMETHIONINE Authors: Su, X.D, Wang, K.T. Deposit date: 2011-12-23 Release date: 2012-02-29 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA Nucleic Acids Res., 40, 2012
3EMB	Wesselsbron virus Methyltransferase in complex with AdoMet and 7MeGpppG Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, Methyltransferase, S-ADENOSYLMETHIONINE, ... Authors: Bollati, M, Ricagno, S, Milani, M, Mastrangelo, E, Bolognesi, M. Deposit date: 2008-09-24 Release date: 2008-11-18 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Recognition of RNA Cap in the Wesselsbron Virus NS5 Methyltransferase Domain: Implications for RNA-Capping Mechanisms in Flavivirus J.Mol.Biol., 385, 2009

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