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2JFG
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Crystal structure of MurD ligase in complex with UMA and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, SULFATE ION, UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE, ...
Authors:Kotnik, M, Humljan, J, Contreras-Martel, C, Oblak, M, Kristan, K, Herve, M, Blanot, D, Urleb, U, Gobec, S, Dessen, A, Solmajer, T.
Deposit date:2007-02-01
Release date:2007-05-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural and functional characterization of enantiomeric glutamic acid derivatives as potential transition state analogue inhibitors of MurD ligase.
J. Mol. Biol., 370, 2007
2JFH
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Crystal structure of MurD ligase in complex with L-Glu containing sulfonamide inhibitor
Descriptor: N-[(6-BUTOXYNAPHTHALEN-2-YL)SULFONYL]-L-GLUTAMIC ACID, SULFATE ION, UDP-N-ACETYLMURAMOYL-ALANINE-D-GLUTAMATE LIGASE
Authors:Kotnik, M, Humljan, J, Contreras-Martel, C, Oblak, M, Kristan, K, Herve, M, Blanot, D, Urleb, U, Gobec, S, Dessen, A, Solmajer, T.
Deposit date:2007-02-01
Release date:2007-05-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and Functional Characterization of Enantiomeric Glutamic Acid Derivatives as Potential Transition State Analogue Inhibitors of Murd Ligase.
J.Mol.Biol., 370, 2007
3QK4
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Crystal structure of d(CGCGGGTACCCGCG)2 as A-DNA duplex
Descriptor: DNA (5'-D(*CP*GP*CP*GP*GP*GP*TP*AP*CP*CP*CP*GP*CP*G)-3')
Authors:Venkadesh, S, Mandal, P.K, Gautham, N.
Deposit date:2011-01-31
Release date:2011-03-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure of a full turn of an A-DNA duplex d(CGCGGGTACCCGCG)(2)
Biochem.Biophys.Res.Commun., 407, 2011
1J4W
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BU of 1j4w by Molmil
COMPLEX OF THE KH3 and KH4 DOMAINS OF FBP WITH A SINGLE_STRANDED 29mer DNA OLIGONUCLEOTIDE FROM THE FUSE ELEMENT OF THE C-MYC ONCOGENE
Descriptor: DNA (5'-D(*GP*TP*A*TP*AP*TP*TP*CP*CP*CP*TP*CP*GP*GP*G*AP*TP*TP*TP*TP*TP*TP*AP*TP*TP*TP*TP*GP*T)-3'), FUSE binding protein
Authors:Clore, G.M, Braddock, D.T.
Deposit date:2001-11-30
Release date:2002-03-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure and dynamics of KH domains from FBP bound to single-stranded DNA.
Nature, 415, 2002
3T2A
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BU of 3t2a by Molmil
TMAO-grown cubic insulin (porcine)
Descriptor: Insulin A chain, Insulin B chain, trimethylamine oxide
Authors:Cahn, J, Venkat, M, Marshall, H, Juers, D.
Deposit date:2011-07-22
Release date:2011-12-28
Last modified:2012-01-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The use of trimethylamine N-oxide as a primary precipitating agent and related methylamine osmolytes as cryoprotective agents for macromolecular crystallography.
Acta Crystallogr.,Sect.D, 68, 2012
1JRG
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Crystal Structure of the R3 form of Pectate Lyase A, Erwinia chrysanthemi
Descriptor: Pectate lyase, SULFATE ION
Authors:Thomas, L.M, Doan, C, Oliver, R.L, Yoder, M.D.
Deposit date:2001-08-13
Release date:2002-06-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of pectate lyase A: comparison to other isoforms.
Acta Crystallogr.,Sect.D, 58, 2002
111D
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CRYSTAL STRUCTURE AND STABILITY OF A DNA DUPLEX CONTAINING A(ANTI).G(SYN) BASE-PAIRS
Descriptor: DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*GP*GP*CP*G)-3')
Authors:Brown, T, Leonard, G.A, Booth, E.D, Chambers, J.
Deposit date:1993-01-04
Release date:1993-07-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base-pairs.
J.Mol.Biol., 207, 1989
3T25
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TMAO-grown orthorhombic trypsin (bovine)
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Cahn, J, Venkat, M, Marshall, H, Juers, D.
Deposit date:2011-07-22
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The use of trimethylamine N-oxide as a primary precipitating agent and related methylamine osmolytes as cryoprotective agents for macromolecular crystallography.
Acta Crystallogr.,Sect.D, 68, 2012
107D
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SOLUTION STRUCTURE OF THE COVALENT DUOCARMYCIN A-DNA DUPLEX COMPLEX
Descriptor: 4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER, DNA (5'-D(*CP*CP*TP*TP*TP*TP*C)-3'), DNA (5'-D(*GP*AP*AP*AP*AP*GP*G)-3')
Authors:Lin, C.H, Patel, D.J.
Deposit date:1995-01-17
Release date:1995-05-08
Last modified:2024-03-13
Method:SOLUTION NMR
Cite:Solution structure of the covalent duocarmycin A-DNA duplex complex.
J.Mol.Biol., 248, 1995
144D
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MINOR GROOVE BINDING OF SN6999 TO AN ALKYLATED DNA: MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-SN6999 COMPLEX
Descriptor: 1-METHYL-4-[4-[4-(4-(1-METHYLQUINOLINIUM)AMINO)BENZAMIDO]ANILINO]PYRIDINIUM, DNA (5'-D(*CP*GP*CP*(G36)P*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Gao, Y.-G, Sriram, M, Denny, W.A, Wang, A.H.-J.
Deposit date:1993-10-26
Release date:1995-05-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Minor groove binding of SN6999 to an alkylated DNA: molecular structure of d(CGC[e6G]AATTCGCG)-SN6999 complex.
Biochemistry, 32, 1993
1XD0
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BU of 1xd0 by Molmil
Acarbose Rearrangement Mechanism Implied by the Kinetic and Structural Analysis of Human Pancreatic alpha-Amylase in Complex with Analogues and Their Elongated Counterparts
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACARBOSE DERIVED PENTASACCHARIDE, Alpha-amylase, ...
Authors:Li, C, Begum, A, Numao, S, Park, K.H, Withers, S.G, Brayer, G.D.
Deposit date:2004-09-03
Release date:2004-12-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Acarbose Rearrangement Mechanism Implied by the Kinetic and Structural Analysis of Human Pancreatic alpha-Amylase in Complex with Analogues and Their Elongated Counterparts
Biochemistry, 44, 2005
1AG5
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THE SOLUTION STRUCTURE OF AN AFLATOXIN B1 EPOXIDE ADDUCT AT THE N7 POSITION OF GUANINE OPPOSITE AN ADENINE IN THE COMPLEMENTARY STRAND OF AN OLIGODEOXYNUCLEOTIDE DUPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: 8,9-DIHYDRO-9-HYDROXY-AFLATOXIN B1, DNA (5'-D(*CP*CP*AP*TP*CP*GP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*CP*AP*GP*AP*TP*GP*G)-3')
Authors:Johnson, D.S, Stone, M.P.
Deposit date:1997-04-01
Release date:1997-09-17
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Refined solution structure of 8,9-dihydro-8-(N7-guanyl)-9-hydroxyaflatoxin B1 opposite CpA in the complementary strand of an oligodeoxynucleotide duplex as determined by 1H NMR.
Biochemistry, 34, 1995
1U3S
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BU of 1u3s by Molmil
Crystal Structure of Estrogen Receptor beta complexed with WAY-797
Descriptor: 3-(6-HYDROXY-NAPHTHALEN-2-YL)-BENZO[D]ISOOXAZOL-6-OL, Estrogen receptor beta, steroid receptor coactivator-1
Authors:Malamas, M.S, Manas, E.S, McDevitt, R.E, Gunawan, I, Xu, Z.B, Collini, M.D, Miller, C.P, Dinh, T, Henderson, R.A, Keith Jr, J.C, Harris, H.A.
Deposit date:2004-07-22
Release date:2005-07-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Design and synthesis of aryl diphenolic azoles as potent and selective estrogen receptor-beta ligands.
J.Med.Chem., 47, 2004
4M7G
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BU of 4m7g by Molmil
Streptomyces Erythraeus Trypsin
Descriptor: Trypsin-like protease
Authors:Blankenship, E, Vukoti, K, Miyagi, M, Lodowski, D.T.
Deposit date:2013-08-12
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.81 Å)
Cite:Conformational flexibility in the catalytic triad revealed by the high-resolution crystal structure of Streptomyces erythraeus trypsin in an unliganded state.
Acta Crystallogr.,Sect.D, 70, 2014
1A6H
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BU of 1a6h by Molmil
DNA QUADRUPLEX CONTAINING GCGC TETRAD, NMR, 4 STRUCTURES
Descriptor: DNA (5'-D(GP*CP*GP*GP*TP*TP*TP*GP*CP*GP*G)-3')
Authors:Kettani, A, Kumar, R.A, Patel, D.J.
Deposit date:1998-02-25
Release date:1998-06-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a DNA quadruplex containing the fragile X syndrome triplet repeat.
J.Mol.Biol., 254, 1995
3S0K
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Crystal Structure of Human Glycolipid Transfer Protein complexed with glucosylceramide containing oleoyl acyl chain (18:1)
Descriptor: (9Z)-N-[(2S,3R,4E)-1-(beta-D-glucopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]octadec-9-enamide, Glycolipid transfer protein, NICKEL (II) ION
Authors:Cabo-Bilbao, A, Samygina, V, Popov, A.N, Ochoa-Lizarralde, B, Goni-de-Cerio, F, Patel, D.J, Brown, R.E, Malinina, L.
Deposit date:2011-05-13
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
3S0I
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Crystal Structure of D48V mutant of Human Glycolipid Transfer Protein complexed with 3-O-sulfo galactosylceramide containing nervonoyl acyl chain
Descriptor: (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE, Glycolipid transfer protein
Authors:Samygina, V, Popov, A.N, Cabo-Bilbao, A, Ochoa-Lizarralde, B, Patel, D.J, Brown, R.E, Malinina, L.
Deposit date:2011-05-13
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein.
Structure, 19, 2011
4CS6
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Crystal structure of AadA - an aminoglycoside adenyltransferase
Descriptor: AMINOGLYCOSIDE ADENYLTRANSFERASE
Authors:Chen, Y, Nasvall, J, Andersson, D.I, Selmer, M.
Deposit date:2014-03-05
Release date:2015-03-25
Last modified:2015-11-11
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structure of Aada from Salmonella Enterica: A Monomeric Aminoglycoside (3'')(9) Adenyltransferase.
Acta Crystallogr.,Sect.D, 71, 2015
2NC5
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BU of 2nc5 by Molmil
Solution Structure of N-Xylosylated Pin1 WW Domain
Descriptor: Pin1 WW Domain, beta-D-xylopyranose
Authors:Hsu, C, Park, S, Mortenson, D.E, Foley, B, Wang, X, Woods, R.J, Case, D.A, Powers, E.T, Wong, C, Dyson, H, Kelly, J.W.
Deposit date:2016-03-20
Release date:2016-06-08
Last modified:2020-07-29
Method:SOLUTION NMR
Cite:The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.
J.Am.Chem.Soc., 138, 2016
3SQ3
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BU of 3sq3 by Molmil
Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase H182A Mutant
Descriptor: Tyrosyl-DNA phosphodiesterase 1
Authors:Gajewski, S, White, S.W.
Deposit date:2011-07-04
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Analysis of the active-site mechanism of tyrosyl-DNA phosphodiesterase I: a member of the phospholipase D superfamily.
J.Mol.Biol., 415, 2012
3SRE
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Serum paraoxonase-1 by directed evolution at pH 6.5
Descriptor: BROMIDE ION, CALCIUM ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Ben David, M, Elias, M, Silman, I, Sussman, J.L, Tawfik, D.S.
Deposit date:2011-07-07
Release date:2012-03-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Catalytic versatility and backups in enzyme active sites: the case of serum paraoxonase 1.
J.Mol.Biol., 418, 2012
3A78
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Crystal structure of the human VDR ligand binding domain bound to the natural metabolite 1alpha,25-dihydroxy-3-epi-vitamin D3
Descriptor: (1S,3S,5Z,7E,14beta,17alpha)-9,10-secocholesta-5,7,10-triene-1,3,25-triol, SULFATE ION, Vitamin D3 receptor
Authors:Sato, Y, Sigueiro, R, Antony, P, Rochel, N, Moras, D.
Deposit date:2009-09-18
Release date:2010-10-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of the activation of the human Vitamin D receptor by the natural metabolite 1alpha,25-dihydroxy-3-epi-vitamin D3
To be Published
2JHD
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Crystal structure of Toxoplasma gondii micronemal protein 1 bound to 3'-sialyl-N-acetyllactosamine
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Blumenschein, T.M.A, Friedrich, N, Childs, R.A, Saouros, S, Carpenter, E.P, Campanero-Rhodes, M.A, Simpson, P, Koutroukides, T, Blackman, M.J, Feizi, T, Soldati-Favre, D, Matthews, S.
Deposit date:2007-02-21
Release date:2007-05-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Atomic Resolution Insight Into Host Cell Recognition by Toxoplasma Gondii.
Embo J., 26, 2007
2JDZ
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Crystal structure of recombinant Dioclea guianensis lectin complexed with 5-bromo-4-chloro-3-indolyl-a-D-mannose
Descriptor: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside, CADMIUM ION, CALCIUM ION, ...
Authors:Nagano, C.S, Sanz, L, Cavada, B.S, Calvete, J.J.
Deposit date:2007-01-12
Release date:2007-10-30
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Insights Into the Structural Basis of the Ph-Dependent Dimer-Tetramer Equilibrium Through Crystallographic Analysis of Recombinant Diocleinae Lectins.
Biochem.J., 409, 2008
2JH7
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Crystal structure of Toxoplasma gondii micronemal protein 1 bound to 6'-sialyl-N-acetyllactosamine
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Blumenschein, T.M.A, Friedrich, N, Childs, R.A, Saouros, S, Carpenter, E.P, Campanero-Rhodes, M.A, Simpson, P, Koutroukides, T, Blackman, M.J, Feizi, T, Soldati-Favre, D, Matthews, S.
Deposit date:2007-02-20
Release date:2007-05-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Atomic Resolution Insight Into Host Cell Recognition by Toxoplasma Gondii.
Embo J., 26, 2007

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