PDB: 201 resultsInfo pagesStatus searchChemie searchBIRD

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3I97	B1 domain of human Neuropilin-1 bound with small molecule EG00229 Descriptor: (S)-2-(3-(benzo[c][1,2,5]thiadiazole-4-sulfonamido)thiophene-2-carboxamido)-5-guanidinopentanoic acid, GLYCEROL, Neuropilin-1 Authors: Allerston, C.K, Djordjevic, S. Deposit date: 2009-07-10 Release date: 2010-03-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Small molecule inhibitors of the neuropilin-1 vascular endothelial growth factor A (VEGF-A) interaction. J.Med.Chem., 53, 2010
3HNY	Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor Descriptor: Coagulation factor VIII Authors: Liu, Z, Yuan, C. Deposit date: 2009-06-01 Release date: 2010-01-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.07 Å) Cite: Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding. J.Biol.Chem., 285, 2010
3JD6	Double octamer structure of retinoschisin, a cell-cell adhesion protein of the retina Descriptor: Retinoschisin Authors: Tolun, G, Vijayasarathy, C, Huang, R, Zeng, Y, Li, Y, Steven, A.C, Sieving, P.A, Heymann, J.B. Deposit date: 2016-04-12 Release date: 2016-05-11 Last modified: 2018-07-18 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Paired octamer rings of retinoschisin suggest a junctional model for cell-cell adhesion in the retina. Proc.Natl.Acad.Sci.USA, 113, 2016
3HNB	Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor Descriptor: (2R)-1-(2,4-dichlorophenoxy)-3-[(2E)-2-imino-3-(2-piperidin-1-ylethyl)-2,3-dihydro-1H-benzimidazol-1-yl]propan-2-ol, Coagulation factor VIII Authors: Liu, Z, Yuan, C. Deposit date: 2009-05-31 Release date: 2010-01-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding. J.Biol.Chem., 285, 2010
4AAX	CpGH89CBM32-5, from Clostridium perfringens, in complex with N- acetylgalactosamine Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, ALPHA-N-ACETYLGLUCOSAMINIDASE, CALCIUM ION, ... Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-12-05 Release date: 2012-04-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
4A42	CpGH89CBM32-6 produced by Clostridium perfringens Descriptor: ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN, CALCIUM ION Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-10-06 Release date: 2012-04-04 Last modified: 2012-04-18 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
4A45	CpGH89CBM32-5, from Clostridium perfringens, in complex with GalNAc- beta-1,3-galactose Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-beta-D-galactopyranose, ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN, CALCIUM ION, ... Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-10-06 Release date: 2012-04-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
4A41	CpGH89CBM32-5, from Clostridium perfringens, in complex with galactose Descriptor: ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN, CALCIUM ION, SODIUM ION, ... Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-10-06 Release date: 2012-04-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
4A44	CpGH89CBM32-5, from Clostridium perfringens, in complex with the Tn Antigen Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Alpha-N-acetylglucosaminidase, CALCIUM ION, ... Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-10-06 Release date: 2012-04-04 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
7JJC	Crystal structure of neuropilin-1 b1 domain in complex with SARS-CoV-2 S1 C-end rule (CendR) peptide Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Neuropilin-1, ... Authors: Chen, K.-E, Collins, B.M. Deposit date: 2020-07-25 Release date: 2020-10-28 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.36 Å) Cite: Neuropilin-1 is a host factor for SARS-CoV-2 infection. Science, 370, 2020
7JNB	The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB in complex with GalNAc Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CALCIUM ION, F5/8 type C domain protein, ... Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-08-04 Release date: 2021-02-03 Last modified: 2021-08-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
7JND	The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB Descriptor: CALCIUM ION, F5/8 type C domain protein, GLYCEROL Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-08-04 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
7JNF	The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB in complex with GalNAc Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CALCIUM ION, F5/8 type C domain protein, ... Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-08-04 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
2QQJ	Crystal Structure of the b1b2 Domains from Human Neuropilin-2 Descriptor: GLYCEROL, Neuropilin-2 Authors: Appleton, B.A, Wiesmann, C. Deposit date: 2007-07-26 Release date: 2007-11-20 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structural studies of neuropilin/antibody complexes provide insights into semaphorin and VEGF binding Embo J., 26, 2007
2RV9	Solution structure of chitosan-binding module 1 derived from chitosanase/glucanase from Paenibacillus sp. IK-5 Descriptor: Glucanase Authors: Shinya, S, Nishimura, S, Fukamizo, T. Deposit date: 2015-05-12 Release date: 2016-04-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase. Biochem.J., 473, 2016
2RVA	Solution structure of chitosan-binding module 2 derived from chitosanase/glucanase from Paenibacillus sp. IK-5 Descriptor: Glucanase Authors: Shinya, S, Nishimura, S, Fukamizo, T. Deposit date: 2015-05-13 Release date: 2016-04-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mechanism of chitosan recognition by CBM32 carbohydrate-binding modules from a Paenibacillus sp. IK-5 chitosanase/glucanase. Biochem.J., 473, 2016
2W1Q	Unique ligand binding specificity for a family 32 Carbohydrate- Binding Module from the Mu toxin produced by Clostridium perfringens Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, HYALURONOGLUCOSAMINIDASE, ... Authors: Ficko-Blean, E, Boraston, A.B. Deposit date: 2008-10-20 Release date: 2009-05-05 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.6 Å) Cite: N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh. J.Mol.Biol., 390, 2009
2W1U	A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,3) galNAc Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, ACETATE ION, ... Authors: Ficko-Blean, E, Boraston, A.B. Deposit date: 2008-10-20 Release date: 2009-05-05 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2 Å) Cite: N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh. J.Mol.Biol., 390, 2009
2V72	The structure of the family 32 CBM from C. perfringens NanJ in complex with galactose Descriptor: CALCIUM ION, EXO-ALPHA-SIALIDASE, beta-D-galactopyranose Authors: Boraston, A.B, Ficko-Blean, E, Healey, M. Deposit date: 2007-07-25 Release date: 2007-08-21 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Carbohydrate Recognition by a Large Sialidase Toxin from Clostridium Perfringens. Biochemistry, 46, 2007
2WDB	A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,2) mannose Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, CALCIUM ION, HYALURONOGLUCOSAMINIDASE Authors: Ficko-Blean, E, Boraston, A.B. Deposit date: 2009-03-23 Release date: 2009-05-05 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.03 Å) Cite: N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh. J.Mol.Biol., 390, 2009
2W1S	Unique ligand binding specificity of a family 32 Carbohydrate-Binding Module from the Mu toxin produced by Clostridium perfringens Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, HYALURONOGLUCOSAMINIDASE, ... Authors: Ficko-Blean, E, Boraston, A.B. Deposit date: 2008-10-20 Release date: 2009-05-05 Last modified: 2019-10-23 Method: X-RAY DIFFRACTION (1.45 Å) Cite: N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh. J.Mol.Biol., 390, 2009
2WUH	Crystal structure of the DDR2 discoidin domain bound to a triple- helical collagen peptide Descriptor: COLLAGEN PEPTIDE, DISCOIDIN DOMAIN RECEPTOR 2 Authors: Carafoli, F, Bihan, D, Stathopoulos, S, Konitsiotis, A.D, Kvansakul, M, Farndale, R.W, Leitinger, B, Hohenester, E. Deposit date: 2009-10-05 Release date: 2009-12-29 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystallographic Insight Into Collagen Recognition by Discoidin Domain Receptor 2 Structure, 17, 2009
7NSN	Multi-domain GH92 alpha-1,2-mannosidase from Neobacillus novalis: mannoimidazole complex Descriptor: (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ... Authors: Kolaczkowski, B.M, Moroz, O.V, Blagova, E, Davies, G.J, Wilson, K.S, Moeler, M.S, Meyer, A.S, Westh, P, Jensen, K, Krogh, K.B.R.M. Deposit date: 2021-03-08 Release date: 2022-09-21 Last modified: 2024-04-10 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Structural and functional characterization of a multi-domain GH92 alpha-1,2-mannosidase from Neobacillus novalis. Acta Crystallogr D Struct Biol, 79, 2023
8FDG	Cryo-EM structure of coagulation factor V short Descriptor: Coagulation factor V Authors: Mohammed, B.M, Pelc, L.A, Rau, M.J, Di Cera, E. Deposit date: 2022-12-03 Release date: 2023-03-15 Last modified: 2023-07-12 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structure of coagulation factor V short. Blood, 141, 2023
8C5G	Structure of human Neuropilin-1 b1b2 domains in complex with Chlorotoxin (Leiurus quinquestriatus) Descriptor: Chlorotoxin, Neuropilin-1 Authors: Boros, E, Ecsedi, P, Szakacs, D, Nyitray, L. Deposit date: 2023-01-09 Release date: 2024-01-17 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of human Neuropilin-1 b1b2 domains in complex with Chlorotoxin (Leiurus quinquestriatus) To Be Published

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