Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3CZY
DownloadVisualize
BU of 3czy by Molmil
Crystal Structure of Human Heme Oxygenase-1 in Complex with 1-(Adamantan-1-yl)-2-(1H-imidazol-1-yl)ethanone
Descriptor: 1-(adamantan-1-yl)-2-(1H-imidazol-1-yl)ethanone, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Jia, Z, Rahman, M.N.
Deposit date:2008-04-30
Release date:2008-09-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:X-ray crystal structure of human heme oxygenase-1 in complex with 1-(adamantan-1-yl)-2-(1H-imidazol-1-yl)ethanone: a common binding mode for imidazole-based heme oxygenase-1 inhibitors.
J.Med.Chem., 51, 2008
4HM5
DownloadVisualize
BU of 4hm5 by Molmil
Naphthalene 1,2-Dioxygenase bound to indene
Descriptor: 1,2-ETHANEDIOL, 2,3-dihydro-1H-indene, FE (III) ION, ...
Authors:Ferraro, D.J, Ramaswamy, S.
Deposit date:2012-10-17
Release date:2013-10-30
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:One enzyme, many reactions: structural basis for the various reactions catalyzed by naphthalene 1,2-dioxygenase.
Iucrj, 4, 2017
4HM4
DownloadVisualize
BU of 4hm4 by Molmil
Naphthalene 1,2-Dioxygenase bound to indan
Descriptor: 1,2-ETHANEDIOL, 2,3-dihydro-1H-indene, FE (III) ION, ...
Authors:Ferraro, D.J, Ramaswamy, S.
Deposit date:2012-10-17
Release date:2013-10-30
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:One enzyme, many reactions: structural basis for the various reactions catalyzed by naphthalene 1,2-dioxygenase.
Iucrj, 4, 2017
1TMX
DownloadVisualize
BU of 1tmx by Molmil
Crystal structure of hydroxyquinol 1,2-dioxygenase from Nocardioides Simplex 3E
Descriptor: 1-HEPTADECANOYL-2-TRIDECANOYL-3-GLYCEROL-PHOSPHONYL CHOLINE, BENZOIC ACID, CHLORIDE ION, ...
Authors:Ferraroni, M, Travkin, V.M, Seifert, J, Schlomann, M, Golovleva, L, Scozzafava, A, Briganti, F.
Deposit date:2004-06-11
Release date:2005-03-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of the hydroxyquinol 1,2-dioxygenase from Nocardioides simplex 3E, a key enzyme involved in polychlorinated aromatics biodegradation.
J.Biol.Chem., 280, 2005
4HKV
DownloadVisualize
BU of 4hkv by Molmil
Naphthalene 1,2-Dioxygenase bound to benzamide
Descriptor: 1,2-ETHANEDIOL, BENZAMIDE, FE (III) ION, ...
Authors:Ferraro, D.J, Ramaswamy, S.
Deposit date:2012-10-15
Release date:2013-10-30
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:One enzyme, many reactions: structural basis for the various reactions catalyzed by naphthalene 1,2-dioxygenase.
Iucrj, 4, 2017
4HM0
DownloadVisualize
BU of 4hm0 by Molmil
Naphthalene 1,2-Dioxygenase bound to indole-3-acetate
Descriptor: 1,2-ETHANEDIOL, 1H-INDOL-3-YLACETIC ACID, FE (III) ION, ...
Authors:Ferraro, D.J, Ramaswamy, S.
Deposit date:2012-10-17
Release date:2013-10-30
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:One enzyme, many reactions: structural basis for the various reactions catalyzed by naphthalene 1,2-dioxygenase.
Iucrj, 4, 2017
4HM7
DownloadVisualize
BU of 4hm7 by Molmil
Naphthalene 1,2-Dioxygenase bound to styrene
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ferraro, D.J, Ramaswamy, S.
Deposit date:2012-10-17
Release date:2013-10-30
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:One enzyme, many reactions: structural basis for the various reactions catalyzed by naphthalene 1,2-dioxygenase.
Iucrj, 4, 2017
3TGM
DownloadVisualize
BU of 3tgm by Molmil
X-Ray Crystal Structure of Human Heme Oxygenase-1 in Complex with 1-(1H-imidazol-1-yl)-4,4-diphenyl-2 butanone
Descriptor: 1-(1H-imidazol-1-yl)-4,4-diphenylbutan-2-one, HEXANE-1,6-DIOL, Heme oxygenase 1, ...
Authors:Rahman, M.N, Jia, Z.
Deposit date:2011-08-17
Release date:2012-02-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A novel, "double-clamp" binding mode for human heme oxygenase-1 inhibition.
Plos One, 7, 2012
4IL6
DownloadVisualize
BU of 4il6 by Molmil
Structure of Sr-substituted photosystem II
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Koua, F.H.M, Umena, Y, Kawakami, K, Kamiya, N, Shen, J.R.
Deposit date:2012-12-29
Release date:2013-03-06
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Sr-substituted photosystem II at 2.1 A resolution and its implications in the mechanism of water oxidation
Proc.Natl.Acad.Sci.USA, 110, 2013
4HJL
DownloadVisualize
BU of 4hjl by Molmil
Naphthalene 1,2-Dioxygenase bound to 1-chloronaphthalene
Descriptor: 1,2-ETHANEDIOL, 1-chloronaphthalene, FE (III) ION, ...
Authors:Ferraro, D.J, Ramaswamy, S.
Deposit date:2012-10-12
Release date:2013-10-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:One enzyme, many reactions: structural basis for the various reactions catalyzed by naphthalene 1,2-dioxygenase.
Iucrj, 4, 2017
2ORQ
DownloadVisualize
BU of 2orq by Molmil
Murine Inducible Nitric Oxide Synthase Oxygenase Domain (DELTA 114) 4-(imidazol-1-yl)phenol and piperonylamine Complex
Descriptor: 1-(1,3-BENZODIOXOL-5-YL)METHANAMINE, 4-(1H-IMIDAZOL-1-YL)PHENOL, Nitric oxide synthase, ...
Authors:Adler, M, Whitlow, M.
Deposit date:2007-02-04
Release date:2007-04-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors
J.Med.Chem., 50, 2007
2ORR
DownloadVisualize
BU of 2orr by Molmil
Murine Inducible Nitric Oxide Synthase Oxygenase Domain (Delta 114) 4-(Benzo[1,3]dioxol-5-yloxy)-2-(4-imidazol-1-yl-phenoxy)-pyrimidine Complex
Descriptor: 1,2-ETHANEDIOL, 4-(1,3-BENZODIOXOL-5-YLOXY)-2-[4-(1H-IMIDAZOL-1-YL)PHENOXY]PYRIMIDINE, Nitric oxide synthase, ...
Authors:Adler, M, Whitlow, M.
Deposit date:2007-02-04
Release date:2007-04-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors
J.Med.Chem., 50, 2007
2ORS
DownloadVisualize
BU of 2ors by Molmil
Murine Inducible Nitric Oxide Synthase Oxygenase Domain (DELTA 114) 4-(Benzo[1,3]dioxol-5-yloxy)-2-(4-imidazol-1-yl-phenoxy)-6-methyl-pyrimidine Complex
Descriptor: 1,2-ETHANEDIOL, 4-(1,3-BENZODIOXOL-5-YLOXY)-2-[4-(1H-IMIDAZOL-1-YL)PHENOXY]-6-METHYLPYRIMIDINE, Nitric oxide synthase, ...
Authors:Adler, M, Whitlow, M.
Deposit date:2007-02-04
Release date:2007-04-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors
J.Med.Chem., 50, 2007
8PUO
DownloadVisualize
BU of 8puo by Molmil
Structural determinants of cold-activity and glucose tolerance of a family 1 glycoside hydrolase (GH1) from Antarctic Marinomonas Ef 1
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-glucosidase
Authors:Gourlay, L.J, Nardini, M.
Deposit date:2023-07-17
Release date:2024-03-06
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural determinants of cold activity and glucose tolerance of a family 1 glycoside hydrolase (GH1) from Antarctic Marinomonas sp. ef1.
Febs J., 291, 2024
8PY3
DownloadVisualize
BU of 8py3 by Molmil
Crystal structure of human Sirt2 in complex with a 1,2,4-oxadiazole based inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-chloranyl-~{N}-[4-[5-[[(3~{S})-1-[(3-fluoranyl-2-methyl-phenyl)methyl]piperidin-3-yl]methyl]-1,2,4-oxadiazol-3-yl]phenyl]benzamide, ...
Authors:Friedrich, F, Colcerasa, A, Einsle, O, Jung, M.
Deposit date:2023-07-24
Release date:2024-06-19
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure-Activity Studies of 1,2,4-Oxadiazoles for the Inhibition of the NAD + -Dependent Lysine Deacylase Sirtuin 2.
J.Med.Chem., 67, 2024
6P8M
DownloadVisualize
BU of 6p8m by Molmil
Crystal Structure of Antibody P-p3b3 A60C Heavy Chain in Complex with 426c HIV-1 gp120 core G459C
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AMMONIUM ION, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2019-06-07
Release date:2019-11-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.594 Å)
Cite:Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization.
Cell Rep, 29, 2019
2Q6N
DownloadVisualize
BU of 2q6n by Molmil
Structure of Cytochrome P450 2B4 with Bound 1-(4-cholorophenyl)imidazole
Descriptor: 1-(4-CHLOROPHENYL)-1H-IMIDAZOLE, Cytochrome P450 2B4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Zhao, Y, Sun, L, Muralidhara, B.K, Kumar, S, White, M.A, Stout, C.D, Halpert, J.R.
Deposit date:2007-06-05
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural and thermodynamic consequences of 1-(4-chlorophenyl)imidazole binding to cytochrome P450 2B4.
Biochemistry, 46, 2007
6NFP
DownloadVisualize
BU of 6nfp by Molmil
1.7 Angstrom Resolution Crystal Structure of Arginase from Bacillus subtilis subsp. subtilis str. 168
Descriptor: 1,2-ETHANEDIOL, Arginase, CHLORIDE ION, ...
Authors:Minasov, G, Wawrzak, Z, Evdokimova, E, Grimshaw, S, Kwon, K, Savchenko, A, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-12-20
Release date:2019-01-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:1.7 Angstrom Resolution Crystal Structure of Arginase from Bacillus subtilis subsp. subtilis str. 168
To Be Published
6O3G
DownloadVisualize
BU of 6o3g by Molmil
Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1 in complex with its MPER peptide epitope (region 671-683 of HIV-1 gp41).
Descriptor: GLYCEROL, MEPER peptide, region 671-683 of HIV-1 gp41, ...
Authors:Irimia, A, Wilson, I.A.
Deposit date:2019-02-26
Release date:2019-12-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.645 Å)
Cite:An MPER antibody neutralizes HIV-1 using germline features shared among donors.
Nat Commun, 10, 2019
4WTP
DownloadVisualize
BU of 4wtp by Molmil
Crystal structure of glycoside hydrolase family 17 beta-1,3-glucanosyltransferase from Rhizomucor miehei
Descriptor: 1,2-ETHANEDIOL, beta-1,3-glucanosyltransferase
Authors:Qin, Z, Yan, Q, Lei, J, Yang, S, Jiang, Z.
Deposit date:2014-10-30
Release date:2015-08-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The first crystal structure of a glycoside hydrolase family 17 beta-1,3-glucanosyltransferase displays a unique catalytic cleft.
Acta Crystallogr.,Sect.D, 71, 2015
6O3J
DownloadVisualize
BU of 6o3j by Molmil
Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1 in complex with its MPER peptide epitope (region 671-683 of HIV-1 gp41) and phosphatidic acid (06:0 PA)
Descriptor: (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate, (4S)-2-METHYL-2,4-PENTANEDIOL, MPER peptide, ...
Authors:Irimia, A, Wilson, I.A.
Deposit date:2019-02-26
Release date:2019-12-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.416 Å)
Cite:An MPER antibody neutralizes HIV-1 using germline features shared among donors.
Nat Commun, 10, 2019
8ZIN
DownloadVisualize
BU of 8zin by Molmil
Terephthalate 1,2-cis-dihydrodioldehydrogenase/Decarboxylase in complex with 2,4-dihydroxybenzoate.
Descriptor: 1,2-ETHANEDIOL, 2,4-DIHYDROXYBENZOIC ACID, 4-hydroxythreonine-4-phosphate dehydrogenase, ...
Authors:Kumar, K.A, Pahwa, D, Kumar, P.
Deposit date:2024-05-14
Release date:2024-10-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Terephthalate 1,2-cis-dihydrodioldehydrogenase/Decarboxylase in complex with 2,4-dihydroxybenzoate.
To Be Published
6O3L
DownloadVisualize
BU of 6o3l by Molmil
Crystal structure of the Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3 in complex with its MPER peptide epitope (region 671-683 of HIV-1 gp41).
Descriptor: GLYCEROL, MPER peptide, region 671-683 of HIV-1 gp41, ...
Authors:Irimia, A, Wilson, I.A.
Deposit date:2019-02-26
Release date:2019-12-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:An MPER antibody neutralizes HIV-1 using germline features shared among donors.
Nat Commun, 10, 2019
5NS8
DownloadVisualize
BU of 5ns8 by Molmil
Crystal structure of beta-glucosidase BglM-G1 mutant H75R from marine metagenome in complex with inhibitor 1-Deoxynojirimycin
Descriptor: 1-DEOXYNOJIRIMYCIN, GLYCEROL, SULFATE ION, ...
Authors:Mhaindarkar, D.C, Gasper, R, Lupilova, N, Leichert, L.I, Hofmann, E.
Deposit date:2017-04-25
Release date:2018-08-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments.
Commun Biol, 1, 2018
7PQT
DownloadVisualize
BU of 7pqt by Molmil
Apo human Kv3.1 cryo-EM structure
Descriptor: POTASSIUM ION, Potassium voltage-gated channel subfamily C member 1
Authors:Botte, M, Huber, S, Bucher, D, Klint, J.K, Rodriguez, D, Tagmose, L, Chami, M, Cheng, R, Hennig, M, Abdul Rhaman, W.
Deposit date:2021-09-20
Release date:2022-08-17
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.65 Å)
Cite:Apo and ligand-bound high resolution Cryo-EM structures of the human Kv3.1 channel reveal a novel binding site for positive modulators.
Pnas Nexus, 1, 2022

243083

PDB entries from 2025-10-15

PDB statisticsPDBj update infoContact PDBjnumon