PDB: 217477 resultsInfo pagesStatus searchChemie searchBIRD

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8PFJ	fully recruited RfaH bound to E. coli transcription complex paused at ops site (not fully complementary scaffold; alternative state of RfaH) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. Deposit date: 2023-06-16 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
8PIB	autoinhibited RfaH bound to E. coli transcription complex paused at ops site (encounter complex) Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. Deposit date: 2023-06-21 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024
7N2O	AS4.2-YEIH-HLA*B27 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, GLYCEROL, ... Authors: Yang, X, Jude, K.M, Garcia, K.C. Deposit date: 2021-05-29 Release date: 2022-12-07 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides. Nature, 612, 2022
7N2Q	AS4.3-YEIH-HLA*B27 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AS4.3 T cell receptor alpha chain, AS4.3 T cell receptor beta chain, ... Authors: Yang, X, Jude, K.M, Garcia, K.C. Deposit date: 2021-05-29 Release date: 2022-12-07 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides. Nature, 612, 2022
7N2R	AS4.3-PRPF3-HLA*B27 Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AS4.3 T cell receptor alpha chain, ... Authors: Yang, X, Jude, K.M, Garcia, K.C. Deposit date: 2021-05-29 Release date: 2022-12-07 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Autoimmunity-associated T cell receptors recognize HLA-B*27-bound peptides. Nature, 612, 2022
6PDL	Crystal Structure of Hendra Virus Attachment G Glycoprotein in Complex with Receptor Ephrin-B2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Attachment glycoprotein, ... Authors: Xu, K, Nikolov, D.B. Deposit date: 2019-06-19 Release date: 2019-11-27 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.7 Å) Cite: New insights into the Hendra virus attachment and entry process from structures of the virus G glycoprotein and its complex with Ephrin-B2. PLoS ONE, 7, 2012
7NX6	Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and EY6A Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, COVOX-222 Fab Heavy chain, ... Authors: Zhou, D, Ren, J, Stuart, D. Deposit date: 2021-03-17 Release date: 2021-04-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Antibody evasion by the P.1 strain of SARS-CoV-2. Cell, 184, 2021
7NX7	Crystal structure of the K417N mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and EY6A Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, CITRIC ACID, ... Authors: Zhou, D, Ren, J, Stuart, D. Deposit date: 2021-03-17 Release date: 2021-04-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Antibody evasion by the P.1 strain of SARS-CoV-2. Cell, 184, 2021
7NX8	Crystal structure of the K417T mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and EY6A Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, CITRIC ACID, ... Authors: Zhou, D, Ren, J, Stuart, D. Deposit date: 2021-03-17 Release date: 2021-04-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Antibody evasion by the P.1 strain of SARS-CoV-2. Cell, 184, 2021
7NXC	Crystal structure of the receptor binding domain of SARS-CoV-2 P.1 variant Spike glycoprotein in complex with ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, Spike protein S1 Authors: Zhou, D, Ren, J, Stuart, D. Deposit date: 2021-03-17 Release date: 2021-04-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.14 Å) Cite: Antibody evasion by the P.1 strain of SARS-CoV-2. Cell, 184, 2021
7NX9	Crystal structure of the N501Y mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and EY6A Fabs Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, COVOX-222 Fab heavy chain, ... Authors: Zhou, D, Ren, J, Stuart, D. Deposit date: 2021-03-17 Release date: 2021-04-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Antibody evasion by the P.1 strain of SARS-CoV-2. Cell, 184, 2021
6YEB	E.coli's Putrescine receptor PotF in its closed apo state Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Shanmugaratnam, S, Kroeger, P, Hocker, B. Deposit date: 2020-03-24 Release date: 2021-01-20 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.97 Å) Cite: A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF. Structure, 29, 2021
6YE7	E.coli's Putrescine receptor PotF complexed with Cadaverine Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CHLORIDE ION, ... Authors: Shanmugaratnam, S, Kroeger, P, Hocker, B. Deposit date: 2020-03-24 Release date: 2021-01-20 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF. Structure, 29, 2021
6YEC	E.coli's Putrescine receptor PotF complexed with Spermine Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Shanmugaratnam, S, Kroeger, P, Hocker, B. Deposit date: 2020-03-24 Release date: 2021-01-20 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.09 Å) Cite: A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF. Structure, 29, 2021
8FHY	Crystal structure of the SARS-CoV-2 receptor binding domain in complex with neutralizing antibody WRAIR-5021 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, MALONATE ION, ... Authors: Sankhala, R.S, Jensen, J.L, Joyce, M.G. Deposit date: 2022-12-15 Release date: 2024-01-17 Method: X-RAY DIFFRACTION (2.53 Å) Cite: Diverse array of neutralizing antibodies elicited upon Spike Ferritin Nanoparticle vaccination in rhesus macaques. Nat Commun, 15, 2024
8F9O	Dog sialic acid esterase (SIAE) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sialic acid acetylesterase, ... Authors: Ide, D, Gorelik, A, Illes, K, Nagar, B. Deposit date: 2022-11-24 Release date: 2024-05-29 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Dog sialic acid esterase (SIAE) To Be Published
7OHD	CRYSTAL STRUCTURE OF FERRIC MURINE NEUROGLOBIN CDLESS MUTANT Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ISOPROPYL ALCOHOL, ... Authors: Exertier, C, Freda, I, Montemiglio, L.C, Savino, C, Cerutti, G, Gugole, E, Vallone, B. Deposit date: 2021-05-10 Release date: 2022-07-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Probing the Role of Murine Neuroglobin CDloop-D-Helix Unit in CO Ligand Binding and Structural Dynamics. Acs Chem.Biol., 17, 2022
8F9R	Rabbit sialic acid esterase (SIAE) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sialic acid acetylesterase, ... Authors: Ide, D, Gorelik, A, Illes, K, Nagar, B. Deposit date: 2022-11-24 Release date: 2024-05-29 Method: X-RAY DIFFRACTION (2.97 Å) Cite: Rabbit sialic acid esterase (SIAE) To Be Published
6OPP	Asymmetric model of CD4- and 17-bound B41 HIV-1 Env SOSIP in complex with DDM Descriptor: 17b Fab heavy chain, 17b Fab light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Ozorowski, G, Torres, J.L, Ward, A.B. Deposit date: 2019-04-25 Release date: 2020-10-21 Last modified: 2020-12-09 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: A Strain-Specific Inhibitor of Receptor-Bound HIV-1 Targets a Pocket near the Fusion Peptide. Cell Rep, 33, 2020
7OXS	1.91 A crystal structure of DNA/2'-O-methyl-RNA heteroduplex Descriptor: DNA (5'-D(*GP*TP*CP*TP*CP*CP*TP*AP*G)-3'), RNA (5'-R(*(OMC)P*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC))-3'), SULFATE ION Authors: Dolot, R.M, Maciaszek, A, Nawrot, B.C. Deposit date: 2021-06-23 Release date: 2021-07-14 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.91 Å) Cite: First High-Resolution Crystal Structures of DNA:2'-O-Methyl-RNA Heteroduplexes Crystals, 2022
7TRD	Human telomerase catalytic core structure at 3.3 Angstrom Descriptor: Telomerase RNA, partial sequence, Telomerase reverse transcriptase, ... Authors: Liu, B, He, Y, Wang, Y, Song, H, Zhou, Z.H, Feigon, J. Deposit date: 2022-01-28 Release date: 2022-04-20 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structure of active human telomerase with telomere shelterin protein TPP1. Nature, 604, 2022
7TRE	Human telomerase catalytic core with shelterin protein TPP1 Descriptor: Adrenocortical dysplasia protein homolog, Telomerase RNA, partial sequence, ... Authors: Liu, B, He, Y, Wang, Y, Song, H, Zhou, Z.H, Feigon, J. Deposit date: 2022-01-28 Release date: 2022-04-20 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of active human telomerase with telomere shelterin protein TPP1. Nature, 604, 2022
7TRF	Human telomerase catalytic core RNP with H2A/H2B Descriptor: Histone H2A, Histone H2B type 1-C/E/F/G/I, Telomerase RNA, ... Authors: Liu, B, He, Y, Wang, Y, Song, H, Zhou, Z.H, Feigon, J. Deposit date: 2022-01-28 Release date: 2022-04-20 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structure of active human telomerase with telomere shelterin protein TPP1. Nature, 604, 2022
8G30	N2 neuraminidase of A/Tanzania/205/2010 H3N2 in complex with 4 FNI19 Fab molecules Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, FNI19 Fab heavy chain, ... Authors: Dang, H.V, Snell, G. Deposit date: 2023-02-06 Release date: 2023-05-31 Last modified: 2023-06-28 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: A pan-influenza antibody inhibiting neuraminidase via receptor mimicry. Nature, 618, 2023
8PID	backtracked E. coli transcription complex paused at ops site and bound to RfaH Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zuber, P.K, Said, N, Hilal, T, Loll, B, Wahl, M.C, Knauer, S.H. Deposit date: 2023-06-21 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (3 Å) Cite: Concerted transformation of a hyper-paused transcription complex and its reinforcing protein. Nat Commun, 15, 2024

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