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9NXG
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BU of 9nxg by Molmil
An alpha-l-arabinofuranosidase (AtAbf43C) from Acetivibrio thermocellus DSM1313
Descriptor: GLYCEROL, Glycoside hydrolase family 43, MAGNESIUM ION
Authors:Galindo, J.L, Jeffrey, P.D, Conway, J.M.
Deposit date:2025-03-25
Release date:2025-08-20
Last modified:2025-10-15
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Functional and structural characterization of AtAbf43C: an exo-1,5-alpha-L-arabinofuranosidase from Acetivibrio thermocellus DSM1313.
Biochem.J., 482, 2025
9NXI
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BU of 9nxi by Molmil
CBM42 domain of alpha-l-arabinofuranosidase (AtAbf43C) from Acetivibrio thermocellus DSM1313
Descriptor: GLYCEROL, Glycoside hydrolase family 43
Authors:Galindo, J.L, Jeffrey, P.D, Conway, J.M.
Deposit date:2025-03-25
Release date:2025-08-20
Last modified:2025-10-15
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Functional and structural characterization of AtAbf43C: an exo-1,5-alpha-L-arabinofuranosidase from Acetivibrio thermocellus DSM1313.
Biochem.J., 482, 2025
6UE0
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BU of 6ue0 by Molmil
Crystal structure of dihydrodipicolinate synthase from Klebsiella pneumoniae bound to pyruvate
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, CHLORIDE ION, SULFATE ION
Authors:Impey, R.E, Lee, M, Hawkins, D.A, Sutton, J.M, Panjikar, S, Perugini, M.A, Soares da Costa, T.P.
Deposit date:2019-09-20
Release date:2020-02-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.892 Å)
Cite:Mis-annotations of a promising antibiotic target in high-priority gram-negative pathogens.
Febs Lett., 594, 2020
5N0H
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BU of 5n0h by Molmil
Crystal structure of NDM-1 in complex with hydrolyzed meropenem - new refinement
Descriptor: (2S,3R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfan yl-3-methyl-2,3-dihydro-1H-pyrrole-5-carboxylic acid, GLYCEROL, Metallo-beta-lactamase type 2, ...
Authors:Raczynska, J.E, Shabalin, I.G, Jaskolski, M, Minor, W, Wlodawer, A, King, D.T, Strynadka, N.C.J.
Deposit date:2017-02-03
Release date:2017-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A close look onto structural models and primary ligands of metallo-beta-lactamases.
Drug Resist. Updat., 40, 2018
8I7Q
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BU of 8i7q by Molmil
Cobalt and Calcium coordinated Concanavalin A at pH 7.4 from Canavalia ensiformis
Descriptor: CALCIUM ION, COBALT (II) ION, Concanavalin A
Authors:Hwang, Y, Jeong, J.H, Lee, S.J.
Deposit date:2023-02-01
Release date:2023-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Selective interactions of Co 2+ -Ca 2+ -concanavalin A with high mannose N -glycans.
Dalton Trans, 53, 2024
9DIN
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BU of 9din by Molmil
Structure of ClpC1 N-terminal Domain complexed with semi-synthetic Rufomycin analog
Descriptor: ACETIC ACID, ATP-dependent Clp protease ATP-binding subunit ClpC1, CHLORIDE ION, ...
Authors:Abad-Zapatero, C, Wolf, N.M.
Deposit date:2024-09-05
Release date:2025-04-16
Last modified:2025-05-07
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structure-Based Analysis of Semisynthetic Anti-TB Rufomycin Analogues.
J.Nat.Prod., 88, 2025
6EVG
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BU of 6evg by Molmil
Structural and Functional Characterisation of a Bacterial Laccase-like Multi-copper Oxidase CueO from Lignin-Degrading Bacterium Ochrobactrum sp. with Oxidase Activity towards Lignin Model Compounds and Lignosulfonate
Descriptor: 1,2-ETHANEDIOL, COPPER (II) ION, Multi-copper Oxidase CueO
Authors:Fulop, V, Wilkinson, R.
Deposit date:2017-11-01
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structural and functional characterisation of multi-copper oxidase CueO from lignin-degrading bacterium Ochrobactrum sp. reveal its activity towards lignin model compounds and lignosulfonate.
FEBS J., 285, 2018
5NBK
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BU of 5nbk by Molmil
NDM-1 metallo-beta-lactamase: a parsimonious interpretation of the diffraction data
Descriptor: CHLORIDE ION, HEXAETHYLENE GLYCOL, Metallo-beta-lactamase type 2, ...
Authors:Raczynska, J.E, Shabalin, I.G, Jaskolski, M, Minor, W, Wlodawer, A.
Deposit date:2017-03-02
Release date:2018-10-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A close look onto structural models and primary ligands of metallo-beta-lactamases.
Drug Resist. Updat., 40, 2018
5N0I
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BU of 5n0i by Molmil
Crystal structure of NDM-1 in complex with beta-mercaptoethanol - new refinement
Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, GLYCEROL, ...
Authors:Raczynska, J.E, Shabalin, I.G, Jaskolski, M, Minor, W, Wlodawer, A, King, D.T, Strynadka, N.C.J.
Deposit date:2017-02-03
Release date:2017-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:A close look onto structural models and primary ligands of metallo-beta-lactamases.
Drug Resist. Updat., 40, 2018
7R0T
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BU of 7r0t by Molmil
Crystal structure of exonuclease ExnV1
Descriptor: CHLORIDE ION, Exonuclease ExnV1, MAGNESIUM ION, ...
Authors:Welin, M, Svensson, A, Hakansson, M, Al-Karadaghi, S, Jasilionis, A, Linares-Pasten, J.A, Wang, L, Nordberg Karlsson, E, Ahlqvist, J.
Deposit date:2022-02-02
Release date:2022-11-02
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Crystal structure of DNA polymerase I from Thermus phage G20c.
Acta Crystallogr D Struct Biol, 78, 2022
7R0K
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BU of 7r0k by Molmil
Crystal structure of Polymerase I from phage G20c
Descriptor: DNA polymerase I
Authors:Welin, M, Svensson, A, Hakansson, M, Al-Karadaghi, S, Linares-Pasten, J.A, Jasilionis, A, Nordberg Karlsson, E, Ahlqvist, J.
Deposit date:2022-02-02
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.972 Å)
Cite:Crystal structure of DNA polymerase I from Thermus phage G20c.
Acta Crystallogr D Struct Biol, 78, 2022
6LXG
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BU of 6lxg by Molmil
NMR solution structure of regulatory ACT domain of the Mycobacterium tuberculosis Rel protein
Descriptor: GTP pyrophosphokinase
Authors:Shin, J, Singal, B, Manimekalai, M.S.S, Gruber, G.
Deposit date:2020-02-11
Release date:2020-11-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Atomic structure of, and valine binding to the regulatory ACT domain of the Mycobacterium tuberculosis Rel protein.
Febs J., 288, 2021
5LYE
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BU of 5lye by Molmil
Re-refined structure of the bacteriophage T4 short tail fibre PDB entry 1H6W containing 71 additionally identified residues
Descriptor: CHLORIDE ION, Gp12, SULFATE ION
Authors:van Raaij, M.J, Taylor, N.M.I, Leiman, P.G.
Deposit date:2016-09-27
Release date:2018-01-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Contractile injection systems of bacteriophages and related systems.
Mol. Microbiol., 108, 2018
6MVH
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BU of 6mvh by Molmil
Crystal structure of FMN-binding beta-glucuronidase from Roseburia hominis
Descriptor: Beta-galactosidase, CALCIUM ION, FLAVIN MONONUCLEOTIDE
Authors:Pellock, S.J, Redinbo, M.R.
Deposit date:2018-10-25
Release date:2019-01-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Discovery and Characterization of FMN-Binding beta-Glucuronidases in the Human Gut Microbiome.
J. Mol. Biol., 431, 2019
9EAT
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BU of 9eat by Molmil
High-Resolution Structure of Escherichia coli Carbonic Anhydrase 2 in Space Group P4(2)2(1)2
Descriptor: Carbonic anhydrase 2, ZINC ION
Authors:Rankin, M.R, Smith, J.L.
Deposit date:2024-11-11
Release date:2024-11-20
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Serendipitous high-resolution structure of Escherichia coli carbonic anhydrase 2.
Acta Crystallogr.,Sect.F, 81, 2025
9EAW
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BU of 9eaw by Molmil
Escherichia coli Carbonic Anhydrase 2 in Space Group P2(1)2(1)2
Descriptor: Carbonic anhydrase, ZINC ION
Authors:Rankin, M.R, Smith, J.L.
Deposit date:2024-11-11
Release date:2024-11-20
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Serendipitous high-resolution structure of Escherichia coli carbonic anhydrase 2.
Acta Crystallogr.,Sect.F, 81, 2025
6N5U
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BU of 6n5u by Molmil
Crystal structure of Arabidopsis thaliana ScoI with copper bound
Descriptor: COPPER (I) ION, Protein SCO1 homolog 1, mitochondrial
Authors:Lisa, M.N, Giannini, E, Llases, M.E, Alzari, P.M, Vila, A.J.
Deposit date:2018-11-22
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Arabidopsis thaliana Hcc1 is a Sco-like metallochaperone for CuAassembly in Cytochrome c Oxidase.
Febs J., 287, 2020
9RXF
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BU of 9rxf by Molmil
E20K/N28G/V36L/D43K/Q48E/I59A/E61K/E72K/V76L/N79S/I92A/D126K/A142V/D153K/D154E/S158T FLAVODOXIN FROM ANABAENA
Descriptor: FLAVIN MONONUCLEOTIDE, Flavodoxin, GLYCEROL
Authors:Martinez-Julvez, M, Perez-Correa, V, Sancho, J, Hidalgo-Toledo, A.
Deposit date:2025-07-11
Release date:2025-11-05
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Protein thermostabilization with Protposer: Pushing the stability limits and folding reversibility of a highly-stabilized apoflavodoxin.
Int.J.Biol.Macromol., 331, 2025
5O2E
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BU of 5o2e by Molmil
Crystal structure of NDM-1 in complex with hydrolyzed cefuroxime - new refinement
Descriptor: (2R,5S)-5-[(carbamoyloxy)methyl]-2-[(R)-carboxy{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}methyl]-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, Metallo-beta-lactamase type 2, SULFATE ION, ...
Authors:Raczynska, J.E, Shabalin, I.G, Jaskolski, M, Minor, W, Wlodawer, A.
Deposit date:2017-05-20
Release date:2018-12-26
Last modified:2025-01-29
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:A close look onto structural models and primary ligands of metallo-beta-lactamases.
Drug Resist. Updat., 40, 2018
6T76
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BU of 6t76 by Molmil
PII-like protein CutA from Nostoc sp. PCC 7120 in apo form
Descriptor: Periplasmic divalent cation tolerance protein, SULFATE ION
Authors:Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D.
Deposit date:2019-10-21
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 288, 2021
6T7E
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BU of 6t7e by Molmil
PII-like protein CutA from Nostoc sp. PCC7120 in complex with MES
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Periplasmic divalent cation tolerance protein
Authors:Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D.
Deposit date:2019-10-21
Release date:2020-07-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Functional and structural characterization of PII-like protein CutA does not support involvement in heavy metal tolerance and hints at a small-molecule carrying/signaling role.
Febs J., 288, 2021
9NHF
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BU of 9nhf by Molmil
The structure of a family 168 glycoside hydrolase from the marine bacterium Muricauda eckloniae.
Descriptor: 1,2-ETHANEDIOL, Glycosyl hydrolase-like family 15 (GHL15) protein
Authors:Knudson-Goerner, E.J, Boraston, A.B.
Deposit date:2025-02-24
Release date:2025-06-11
Last modified:2025-07-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of a family 168 glycoside hydrolase from the marine bacterium Muricauda eckloniae.
Acta Crystallogr.,Sect.F, 81, 2025
9EBZ
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BU of 9ebz by Molmil
Escherichia coli Carbonic Anhydrase 2 in Space Group C222(1)
Descriptor: Carbonic anhydrase, ZINC ION
Authors:Rankin, M.R, Smith, J.L.
Deposit date:2024-11-13
Release date:2024-11-20
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Serendipitous high-resolution structure of Escherichia coli carbonic anhydrase 2.
Acta Crystallogr.,Sect.F, 81, 2025
6NEE
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BU of 6nee by Molmil
Crystal structure of a reconstructed ancestor of Triosephosphate isomerase from eukaryotes
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Rodriguez-Romero, A, Schulte-Sasse, M, Fernandez-Velasco, D.A.
Deposit date:2018-12-17
Release date:2019-01-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural, thermodynamic and catalytic characterization of an ancestral triosephosphate isomerase reveal early evolutionary coupling between monomer association and function.
FEBS J., 286, 2019
9E0O
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BU of 9e0o by Molmil
CryoEM structure of inducible Lysine decarboxylase from Hafnia alvei L-hydrazino-Lysine analog at 2.04 Angstrom resolution
Descriptor: (2R)-6-amino-2-[(2E)-2-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)hydrazin-1-yl]hexanoic acid, Lysine decarboxylase, inducible
Authors:Duhoo, Y, Desfosses, A, Gutsche, I, Doukov, T.I, Berkowitz, D.B.
Deposit date:2024-10-18
Release date:2025-06-04
Method:ELECTRON MICROSCOPY (2 Å)
Cite:alpha-Hydrazino Acids Inhibit Pyridoxal Phosphate-Dependent Decarboxylases via "Catalytically Correct" Ketoenamine Tautomers: A Special Motif for Chemical Biology and Drug Discovery?
Acs Catalysis, 15, 2025

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PDB entries from 2025-12-10

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