Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MEN
DownloadVisualize
BU of 5men by Molmil
Human Leukocyte Antigen A02 presenting ILAKFLHWL, in complex with cognate T-Cell Receptor
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, GLYCEROL, ...
Authors:Rizkallah, P.J, Lloyd, A, Crowther, M, Cole, D.K, Sewell, A.K.
Deposit date:2016-11-16
Release date:2016-12-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structural Mechanism Underpinning Cross-reactivity of a CD8+ T-cell Clone That Recognizes a Peptide Derived from Human Telomerase Reverse Transcriptase.
J. Biol. Chem., 292, 2017
6P4B
DownloadVisualize
BU of 6p4b by Molmil
HyHEL10 fab variant HyHEL10-4x (heavy chain mutations L4F, Y33H, S56N, and Y58F) bound to hen egg lysozyme variant HEL2x-flex (mutations R21Q, R73E, C76S, and C94S)
Descriptor: CHLORIDE ION, HyHEL10 Fab heavy chain, HyHEL10 Fab light chain, ...
Authors:Langley, D.B, Christ, D.
Deposit date:2019-05-27
Release date:2020-05-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conformational diversity facilitates antibody mutation trajectories and discrimination between foreign and self-antigens.
Proc.Natl.Acad.Sci.USA, 117, 2020
6P4C
DownloadVisualize
BU of 6p4c by Molmil
HyHEL10 Fab carrying four heavy chain mutations (HyHEL10-4x): L4F, Y33H, S56N, and Y58F
Descriptor: CHLORIDE ION, HyHEL10 Fab heavy chain, HyHEL10 Fab light chain
Authors:Langley, D.B, Christ, D.
Deposit date:2019-05-27
Release date:2020-05-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Conformational diversity facilitates antibody mutation trajectories and discrimination between foreign and self-antigens.
Proc.Natl.Acad.Sci.USA, 117, 2020
6OKP
DownloadVisualize
BU of 6okp by Molmil
B41 SOSIP.664 in complex with the silent-face antibody SF12 and V3-targeting antibody 10-1074
Descriptor: 10-1074 Heavy Chain,10-1074 Heavy Chain, 10-1074 Light Chain,10-1074 Light Chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Barnes, C.O, Bjorkman, P.J.
Deposit date:2019-04-14
Release date:2019-06-05
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Broad and Potent Neutralizing Antibodies Recognize the Silent Face of the HIV Envelope.
Immunity, 50, 2019
6Q3S
DownloadVisualize
BU of 6q3s by Molmil
Engineered Human HLA_A2 MHC Class I molecule in complex with TCR and SV9 peptide
Descriptor: ACETATE ION, Beta-2-microglobulin, GLYCEROL, ...
Authors:Meijers, R, Anjanappa, R, Springer, S, Garcia-Alai, M.
Deposit date:2018-12-04
Release date:2019-07-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:High-throughput peptide-MHC complex generation and kinetic screenings of TCRs with peptide-receptive HLA-A*02:01 molecules.
Sci Immunol, 4, 2019
6OKQ
DownloadVisualize
BU of 6okq by Molmil
Crystal structure of the SF12 Fab
Descriptor: SF12 Fab Heavy Chain,SF12 Fab Heavy Chain, SF12 Fab Light Chain,SF12 Fab Light Chain
Authors:Barnes, C.O, Bjorkman, P.J.
Deposit date:2019-04-14
Release date:2019-06-05
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Broad and Potent Neutralizing Antibodies Recognize the Silent Face of the HIV Envelope.
Immunity, 50, 2019
5MP3
DownloadVisualize
BU of 5mp3 by Molmil
Crystal structure of DC8E8 Fab in the complex with a 30-mer tau peptide at pH 6.5
Descriptor: ENSMUSG00000076577 protein, Igh protein, Microtubule-associated protein
Authors:Skrabana, R, Novak, M, Cehlar, O, Kontsekova, E.
Deposit date:2016-12-15
Release date:2018-05-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystal structure of DC8E8 Fab in the complex with a 30-mer tau peptide at pH 6.5
To be published
8EMA
DownloadVisualize
BU of 8ema by Molmil
mouse full length B cell receptor
Descriptor: Anti-human Langerin 2G3 lambda chain, B-cell antigen receptor complex-associated protein alpha chain, B-cell antigen receptor complex-associated protein beta chain, ...
Authors:Ying, D, Xiong, P, Michael, R.
Deposit date:2022-09-27
Release date:2022-11-16
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:Structural principles of B cell antigen receptor assembly.
Nature, 612, 2022
8E4C
DownloadVisualize
BU of 8e4c by Molmil
IgM BCR fab truncated form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, B-cell antigen receptor complex-associated protein alpha chain,Yellow fluorescent protein, B-cell antigen receptor complex-associated protein beta chain, ...
Authors:Dong, Y, Pi, X, Wu, H, Reth, M.
Deposit date:2022-08-18
Release date:2022-11-16
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural principles of B cell antigen receptor assembly.
Nature, 612, 2022
8FK5
DownloadVisualize
BU of 8fk5 by Molmil
Cryo-EM Structure of PG9RSH DU011 Fab in complex with BG505 DS-SOSIP.664
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2022-12-20
Release date:2023-05-31
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design.
Cell Rep, 42, 2023
3MC0
DownloadVisualize
BU of 3mc0 by Molmil
Crystal Structure of Staphylococcal Enterotoxin G (SEG) in Complex with a Mouse T-cell Receptor beta Chain
Descriptor: ACETATE ION, Enterotoxin SEG, variable beta 8.2 mouse T cell receptor
Authors:Fernandez, M.M, Cho, S, Robinson, H, Mariuzza, R.A, Malchiodi, E.L.
Deposit date:2010-03-26
Release date:2010-10-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of staphylococcal enterotoxin G (SEG) in complex with a mouse T-cell receptor {beta} chain.
J.Biol.Chem., 286, 2011
5KSB
DownloadVisualize
BU of 5ksb by Molmil
T15-DQ8.5-glia-gamma1 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DQ8.5-glia-gamma1 peptide, ...
Authors:Petersen, J, Rossjohn, J, Reid, H.H.
Deposit date:2016-07-08
Release date:2016-09-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution.
Structure, 24, 2016
5KS9
DownloadVisualize
BU of 5ks9 by Molmil
Bel502-DQ8-glia-alpha1 complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Bel502 TCR alpha TRAV20*01, Bel502 TCR beta TRBV9*01, ...
Authors:Petersen, J, Rossjohn, J, Reid, H.H.
Deposit date:2016-07-08
Release date:2016-09-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution.
Structure, 24, 2016
5L8L
DownloadVisualize
BU of 5l8l by Molmil
Aurora-A kinase domain in complex with vNAR-D01 (crystal form 1)
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Aurora kinase A, ...
Authors:Burgess, S.G, Bayliss, R.
Deposit date:2016-06-08
Release date:2016-07-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Allosteric inhibition of Aurora-A kinase by a synthetic vNAR domain.
Open Biology, 6, 2016
3MNV
DownloadVisualize
BU of 3mnv by Molmil
Crystal structure of the non-neutralizing HIV antibody 13H11 Fab fragment
Descriptor: 1,2-ETHANEDIOL, ANTI-HIV-1 ANTIBODY 13H11 HEAVY CHAIN, ANTI-HIV-1 ANTIBODY 13H11 LIGHT CHAIN, ...
Authors:Nicely, N.I, Dennison, S.M, Kelsoe, G, Liao, H.-X, Alam, S.M, Haynes, B.F.
Deposit date:2010-04-22
Release date:2010-11-17
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of a non-neutralizing antibody to the HIV-1 gp41 membrane-proximal external region.
Nat.Struct.Mol.Biol., 17, 2010
3MOQ
DownloadVisualize
BU of 3moq by Molmil
Amyloid beta(18-41) peptide fusion with new antigen receptor variable domain from sharks
Descriptor: New antigen receptor variable domain,P3(40) peptide from Amyloid beta A4 protein,New antigen receptor variable domain
Authors:Streltsov, V.A.
Deposit date:2010-04-23
Release date:2011-02-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.054 Å)
Cite:Crystal Structure of the Amyloid-{beta} p3 Fragment Provides a Model for Oligomer Formation in Alzheimer's Disease
J.Neurosci., 31, 2011
3U82
DownloadVisualize
BU of 3u82 by Molmil
Binding of herpes simplex virus glycoprotein D to nectin-1 exploits host cell adhesion
Descriptor: Envelope glycoprotein D, Poliovirus receptor-related protein 1
Authors:Zhang, N, Yan, J, Lu, G, Guo, Z, Fan, Z, Wang, J, Shi, Y, Qi, J, Gao, G.F.
Deposit date:2011-10-15
Release date:2012-03-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.164 Å)
Cite:Binding of herpes simplex virus glycoprotein D to nectin-1 exploits host cell adhesion.
Nat Commun, 2, 2011
3V52
DownloadVisualize
BU of 3v52 by Molmil
Structure of a monoclonal antibody complexed with its MHC-I antigen
Descriptor: 1,2-ETHANEDIOL, ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 H CHAIN, ...
Authors:Mage, M.G, Dolan, M.A, Wang, R, Boyd, L.F, Revilleza, M.J, Robinson, H, Natarajan, K, Myers, N.B, Hansen, T.H, Margulies, D.H.
Deposit date:2011-12-15
Release date:2012-07-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:The Peptide-receptive transition state of MHC class I molecules: insight from structure and molecular dynamics.
J.Immunol., 189, 2012
3UO1
DownloadVisualize
BU of 3uo1 by Molmil
Structure of a monoclonal antibody complexed with its MHC-I antigen
Descriptor: ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 H CHAIN, 64-3-7 L CHAIN, ...
Authors:Margulies, D.H, Mage, M.G, Wang, R, Natarajan, K.
Deposit date:2011-11-16
Release date:2012-07-25
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.641 Å)
Cite:The Peptide-receptive transition state of MHC class I molecules: insight from structure and molecular dynamics.
J.Immunol., 189, 2012
3T77
DownloadVisualize
BU of 3t77 by Molmil
S25-2- A(2-4)KDO disaccharide complex
Descriptor: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid, MAGNESIUM ION, S25-2 FAB (IGG1K) heavy chain, ...
Authors:Nguyen, H.P, Seto, N.O, Mackenzie, C.R, Brade, L, Kosma, P, Brade, H, Evans, S.V.
Deposit date:2011-07-29
Release date:2011-08-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.739 Å)
Cite:Germline antibody recognition of distinct carbohydrate epitopes.
Nat.Struct.Biol., 10, 2003
3UYR
DownloadVisualize
BU of 3uyr by Molmil
Structure of a monoclonal antibody complexed with its MHC-I antigen
Descriptor: 1,2-ETHANEDIOL, H-2 class I histocompatibility antigen, L-D alpha chain, ...
Authors:Margulies, D.H, Mage, M.G, Wang, R, Natarajan, K.
Deposit date:2011-12-06
Release date:2012-07-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Peptide-receptive transition state of MHC class I molecules: insight from structure and molecular dynamics.
J.Immunol., 189, 2012
3VRL
DownloadVisualize
BU of 3vrl by Molmil
Crystal structure of BMJ4 p24 capsid protein in complex with A10F9 Fab
Descriptor: A10F9 Fab heavy chain, A10F9 Fab light chain, Gag protein
Authors:Gu, Y, Cao, F, Li, S, Yuan, Y.A, Xia, N.
Deposit date:2012-04-12
Release date:2013-04-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of the HIV-1 capsid protein p24 in complex with the broad-spectrum antibody A10F9
To be Published
3V4U
DownloadVisualize
BU of 3v4u by Molmil
Structure of a monoclonal antibody complexed with its MHC-I antigen
Descriptor: ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 H CHAIN, 64-3-7 L CHAIN, ...
Authors:Margulies, D.H, Mage, M.G, Wang, R, Natarajan, K.
Deposit date:2011-12-15
Release date:2012-07-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:The Peptide-receptive transition state of MHC class I molecules: insight from structure and molecular dynamics.
J.Immunol., 189, 2012
3U0W
DownloadVisualize
BU of 3u0w by Molmil
AD related murine antibody Fragment
Descriptor: Fab Heavy Chain, Ig gamma-1 chain C region, Fab Light Chain, ...
Authors:Miles, L.A, Crespi, G.A.N, Parker, M.W.
Deposit date:2011-09-29
Release date:2012-10-03
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of an AD related antibody
To be Published
3WE6
DownloadVisualize
BU of 3we6 by Molmil
Crystal structure of anti-Prostaglandin E2 Fab fragment
Descriptor: ISOPROPYL ALCOHOL, mAb Fab H fragment, mAb Fab L fragment
Authors:Sugahara, M, Ago, H, Saino, H, Miyano, M.
Deposit date:2013-07-01
Release date:2014-07-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
To be Published

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon