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7YHQ
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BU of 7yhq by Molmil
CryoEM structure of Arabidopsis ROS1 in complex with a covalent-linked reaction intermediate at 3.9 Angstroms resolution
Descriptor: DNA (40-MER), IRON/SULFUR CLUSTER, Sex-determining region Y protein,DNA glycosylase/AP lyase ROS1
Authors:Du, X, Du, J.
Deposit date:2022-07-14
Release date:2022-11-30
Last modified:2023-03-08
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Molecular basis of the plant ROS1-mediated active DNA demethylation.
Nat.Plants, 9, 2023
6T7C
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BU of 6t7c by Molmil
Structure of two copies of human Sox11 transcription factor in complex with a nucleosome
Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
Authors:Dodonova, S.O, Zhu, F, Dienemann, C, Taipale, J, Cramer, P.
Deposit date:2019-10-21
Release date:2020-04-29
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function.
Nature, 580, 2020
6CIL
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BU of 6cil by Molmil
PRE-REACTION COMPLEX, RAG1(E962Q)/2-INTACT/INTACT 12/23RSS COMPLEX IN MN2+
Descriptor: High mobility group protein B1, Intact 12RSS substrate forward strand, Intact 12RSS substrate reverse strand, ...
Authors:Chuenchor, W, Chen, X, Kim, M.S, Gellert, M, Yang, W.
Deposit date:2018-02-24
Release date:2018-04-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (4.15 Å)
Cite:Cracking the DNA Code for V(D)J Recombination.
Mol. Cell, 70, 2018
6OEN
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BU of 6oen by Molmil
Cryo-EM structure of mouse RAG1/2 PRC complex (DNA1)
Descriptor: CALCIUM ION, DNA (46-MER), DNA (57-MER), ...
Authors:Chen, X, Cui, Y, Zhou, Z.H, Yang, W, Gellert, M.
Deposit date:2019-03-27
Release date:2020-01-29
Last modified:2020-02-26
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Cutting antiparallel DNA strands in a single active site.
Nat.Struct.Mol.Biol., 27, 2020
6T7D
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BU of 6t7d by Molmil
Structure of human Sox11 transcription factor in complex with a nucleosome
Descriptor: DNA (151-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
Authors:Dodonova, S.O, Zhu, F, Dienemann, C, Taipale, J, Cramer, P.
Deposit date:2019-10-21
Release date:2020-04-29
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function.
Nature, 580, 2020
7Y8R
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BU of 7y8r by Molmil
The nucleosome-bound human PBAF complex
Descriptor: ACTB protein (Fragment), ADENOSINE-5'-DIPHOSPHATE, AT-rich interactive domain-containing protein 2, ...
Authors:Wang, L, Yu, J, Yu, Z, Wang, Q, He, S, Xu, Y.
Deposit date:2022-06-24
Release date:2022-12-07
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structure of nucleosome-bound human PBAF complex.
Nat Commun, 13, 2022
6ERQ
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BU of 6erq by Molmil
Structure of the human mitochondrial transcription initiation complex at the HSP promoter
Descriptor: DNA-directed RNA polymerase, mitochondrial, Dimethyladenosine transferase 2, ...
Authors:Hillen, H.S, Morozov, Y.I, Sarfallah, A, Temiakov, D, Cramer, P.
Deposit date:2017-10-18
Release date:2017-11-15
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Structural Basis of Mitochondrial Transcription Initiation.
Cell, 171, 2017
6ERP
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BU of 6erp by Molmil
Structure of the human mitochondrial transcription initiation complex at the LSP promoter
Descriptor: DNA-directed RNA polymerase, mitochondrial, Dimethyladenosine transferase 2, ...
Authors:Hillen, H.S, Morozov, Y.I, Sarfallah, A, Temiakov, D, Cramer, P.
Deposit date:2017-10-18
Release date:2017-11-15
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (4.502 Å)
Cite:Structural Basis of Mitochondrial Transcription Initiation.
Cell, 171, 2017
6UPK
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BU of 6upk by Molmil
Structure of FACT_subnucleosome complex 1
Descriptor: DNA (79-mer), FACT complex subunit SPT16, FACT complex subunit SSRP1, ...
Authors:Zhou, K, Tan, Y.Z, Wei, H, Liu, Y, Carragher, B, Potter, C, Luger, K.
Deposit date:2019-10-17
Release date:2019-12-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:FACT caught in the act of manipulating the nucleosome.
Nature, 577, 2020
6T7B
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BU of 6t7b by Molmil
Structure of human Sox2 transcription factor in complex with a nucleosome
Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ...
Authors:Dodonova, S.O, Zhu, F, Dienemann, C, Taipale, J, Cramer, P.
Deposit date:2019-10-21
Release date:2020-04-29
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Nucleosome-bound SOX2 and SOX11 structures elucidate pioneer factor function.
Nature, 580, 2020
8I9M
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BU of 8i9m by Molmil
The RAGE and HMGB1 complex
Descriptor: Advanced glycosylation end product-specific receptor, High mobility group protein B1
Authors:Han, C.W, Kim, H.J.
Deposit date:2023-02-07
Release date:2024-02-14
Method:ELECTRON MICROSCOPY (5.19 Å)
Cite:The RAGE and HMGB1 complex
To Be Published
6UPL
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BU of 6upl by Molmil
Structure of FACT_subnucleosome complex 2
Descriptor: DNA (79-mer), FACT complex subunit SPT16, FACT complex subunit SSRP1, ...
Authors:Zhou, K, Tan, Y.Z, Wei, H, Liu, Y, Carragher, B, Potter, C, Luger, K.
Deposit date:2019-10-17
Release date:2019-12-11
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:FACT caught in the act of manipulating the nucleosome.
Nature, 577, 2020
1HRY
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BU of 1hry by Molmil
THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTID-DIMENSIONAL HETERONUCLEAR-EDITED AND-FILTERED NMR
Descriptor: DNA (5'-D(*GP*CP*AP*CP*AP*AP*AP*C)-3'), DNA (5'-D(*GP*TP*TP*TP*GP*TP*GP*C)-3'), HUMAN SRY
Authors:Clore, G.M, Werner, M.H, Huth, J.R, Gronenborn, A.M.
Deposit date:1995-05-09
Release date:1995-09-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex.
Cell(Cambridge,Mass.), 81, 1995
2YQI
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BU of 2yqi by Molmil
Solution structure of the second HMG-box domain from high mobility group protein B3
Descriptor: High mobility group protein B3
Authors:Qin, X.R, Hayahsi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2008-04-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the second HMG-box domain from high mobility group protein B3
To be Published
2YRQ
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BU of 2yrq by Molmil
Solution structure of the tandem HMG box domain from Human High mobility group protein B1
Descriptor: High mobility group protein B1
Authors:Tomizawa, T, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-02
Release date:2008-02-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the tandem HMG box domain from Human High mobility group protein B1
To be Published
1J46
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BU of 1j46 by Molmil
3D Solution NMR Structure of the Wild Type HMG-BOX Domain of the Human Male Sex Determining Factor Sry Complexed to DNA
Descriptor: 5'-D(*CP*CP*TP*GP*CP*AP*CP*AP*AP*AP*CP*AP*CP*C)-3', 5'-D(*GP*GP*TP*GP*TP*TP*TP*GP*TP*GP*CP*AP*GP*G)-3', SEX-DETERMINING REGION Y PROTEIN
Authors:Clore, G.M, Murphy, E.C.
Deposit date:2001-07-23
Release date:2001-10-03
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation.
J.Mol.Biol., 312, 2001
2YUL
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BU of 2yul by Molmil
Solution structure of the HMG box of human Transcription factor SOX-17
Descriptor: Transcription factor SOX-17
Authors:Abe, H, Tochio, N, Miyamoto, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the HMG box of human Transcription factor SOX-17
To be Published
1J3D
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BU of 1j3d by Molmil
Solution structure of the C-terminal domain of the HMGB2
Descriptor: High mobility group protein 2
Authors:Kurita, J, Shimahara, H, Yoshida, M, Tate, S.
Deposit date:2003-01-23
Release date:2004-05-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Strucutral comparison of two HMG-boxes in the non-histone protein HMG-2 with in the HMG-1
To be Published
1J47
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BU of 1j47 by Molmil
3D Solution NMR Structure of the M9I Mutant of the HMG-Box Domain of the Human Male Sex Determining Factor SRY Complexed to DNA
Descriptor: 5'-D(*CP*CP*TP*GP*CP*AP*CP*AP*AP*AP*CP*AP*CP*C)-3', 5'-D(*GP*GP*TP*GP*TP*TP*TP*GP*TP*GP*CP*AP*GP*G)-3', SEX-DETERMINING REGION Y PROTEIN
Authors:Clore, G.M, Murphy, E.C.
Deposit date:2001-07-23
Release date:2001-10-03
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation.
J.Mol.Biol., 312, 2001
2E6O
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BU of 2e6o by Molmil
Solution structure of the HMG box domain from human HMG-box transcription factor 1
Descriptor: HMG box-containing protein 1
Authors:Qin, X.R, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-28
Release date:2007-07-03
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the HMG box domain from human HMG-box transcription factor 1
To be published
2LEF
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BU of 2lef by Molmil
LEF1 HMG DOMAIN (FROM MOUSE), COMPLEXED WITH DNA (15BP), NMR, 12 STRUCTURES
Descriptor: DNA (5'-D(*CP*AP*CP*CP*CP*TP*TP*TP*GP*AP*AP*GP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*CP*TP*TP*CP*AP*AP*AP*GP*GP*GP*TP*G)-3'), PROTEIN (LYMPHOID ENHANCER-BINDING FACTOR)
Authors:Li, X, Love, J.J, Case, D.A, Wright, P.E.
Deposit date:1998-10-13
Release date:1998-10-21
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural basis for DNA bending by the architectural transcription factor LEF-1.
Nature, 376, 1995
1J3C
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BU of 1j3c by Molmil
Solution structure of the C-terminal domain of the HMGB2
Descriptor: High mobility group protein 2
Authors:Kurita, J, Shimahara, H, Yoshida, M, Tate, S.
Deposit date:2003-01-23
Release date:2004-05-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Strucutral comparison of two HMG-boxes in the non-histone protein HMG-2 with in the HMG-1
To be Published
1J5N
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BU of 1j5n by Molmil
Solution Structure of the Non-Sequence-Specific HMGB protein NHP6A in complex with SRY DNA
Descriptor: 5'-D(*CP*TP*GP*AP*AP*CP*AP*AP*TP*CP*AP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*TP*GP*AP*TP*TP*GP*TP*TP*CP*AP*G)-3', Nonhistone chromosomal protein 6A
Authors:Masse, J.E, Wong, B, Yen, Y.-M, Allain, F.H.-T, Johnson, R.C, Feigon, J.
Deposit date:2002-05-15
Release date:2002-10-16
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding
J.Mol.Biol., 323, 2002
2LE4
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BU of 2le4 by Molmil
Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2
Descriptor: Transcription factor SOX-2
Authors:Sahu, S.C, Markley, J.L, Tonelli, M, Bahrami, A, Eghbalnia, H.R, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2011-06-06
Release date:2011-07-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2
To be Published
1WGF
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BU of 1wgf by Molmil
Solution structure of the 4th HMG-box of mouse UBF1
Descriptor: Upstream Binding Factor 1
Authors:Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the 4th HMG-box of mouse UBF1
To be Published

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