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5VOF
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BU of 5vof by Molmil
DesGla-XaS195A Bound to Aptamer 11F7t and Rivaroxaban
Descriptor: 5-chloro-N-({(5S)-2-oxo-3-[4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene-2-carboxamide, CALCIUM ION, Coagulation factor X, ...
Authors:Krishnaswamy, S, Kumar, S.
Deposit date:2017-05-02
Release date:2018-06-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Combination of aptamer and drug for reversible anticoagulation in cardiopulmonary bypass.
Nat. Biotechnol., 36, 2018
6RTA
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BU of 6rta by Molmil
Tetragonal lysozyme grown with 300g/L Ficoll
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Pereira, P.J.B, Ferreira, C, Martins, P.M.
Deposit date:2019-05-22
Release date:2019-06-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Protein crystals as a key for deciphering macromolecular crowding effects on biological reactions.
Phys Chem Chem Phys, 22, 2020
6TFH
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BU of 6tfh by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+)
Descriptor: Chains: A, MANGANESE (II) ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-14
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
5TDW
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BU of 5tdw by Molmil
Set3 PHD finger in complex with histone H3K4me3
Descriptor: SET domain-containing protein 3, SODIUM ION, ZINC ION, ...
Authors:Andrews, F.H, Ali, M, Kutateladze, T.G.
Deposit date:2016-09-19
Release date:2016-10-19
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insight into Recognition of Methylated Histone H3K4 by Set3.
J. Mol. Biol., 429, 2017
5FFR
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BU of 5ffr by Molmil
Crystal Structure of Surfactant Protein-A complexed with phosphocholine
Descriptor: CALCIUM ION, PHOSPHOCHOLINE, Pulmonary surfactant-associated protein A, ...
Authors:Goh, B.C, Wu, H, Rynkiewicz, M.J, Schulten, K, Seaton, B.A, McCormack, F.X.
Deposit date:2015-12-18
Release date:2016-07-06
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Elucidation of Lipid Binding Sites on Lung Surfactant Protein A Using X-ray Crystallography, Mutagenesis, and Molecular Dynamics Simulations.
Biochemistry, 55, 2016
6H90
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BU of 6h90 by Molmil
K145A variant of beta-phosphoglucomutase from Lactococcus lactis inhibited by beryllium trifluoride to 1.3 A.
Descriptor: 1,2-ETHANEDIOL, BERYLLIUM TRIFLUORIDE ION, Beta-phosphoglucomutase, ...
Authors:Robertson, A.J, Bisson, C, Waltho, J.P.
Deposit date:2018-08-03
Release date:2020-08-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Transition state of phospho-enzyme hydrolysis in beta-phosphoglucomutase.
To Be Published
5FH3
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BU of 5fh3 by Molmil
The structure of rat cytosolic PEPCK variant E89A in complex with oxalic acid and GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, OXALATE ION, ...
Authors:Johnson, T.A, Holyoak, T.
Deposit date:2015-12-21
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Utilization of Substrate Intrinsic Binding Energy for Conformational Change and Catalytic Function in Phosphoenolpyruvate Carboxykinase.
Biochemistry, 55, 2016
6H83
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BU of 6h83 by Molmil
MamM CTD D249H - Copper form
Descriptor: BETA-MERCAPTOETHANOL, COPPER (II) ION, Magnetosome protein MamM, ...
Authors:Barber-Zucker, S, Zarivach, R.
Deposit date:2018-08-01
Release date:2019-08-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:MamM CTD D249H - Copper form
To Be Published
5T9B
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BU of 5t9b by Molmil
Crystal structure of B. subtilis 168 GlpQ in complex with glycerol-3-phosphate (5 minute soak)
Descriptor: CALCIUM ION, Glycerophosphoryl diester phosphodiesterase, SN-GLYCEROL-3-PHOSPHATE, ...
Authors:Li, F.K.K, Strynadka, N.C.J.
Deposit date:2016-09-09
Release date:2016-11-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component.
J. Biol. Chem., 291, 2016
6TLS
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BU of 6tls by Molmil
HUMAN CK2 KINASE ALPHA SUBUNIT IN COMPLEX WITH THE ATP-COMPETITIVE INHIBITOR 4,6-DIBROMOBENZOTRIAZOLE
Descriptor: 5,7-bis(bromanyl)-1~{H}-benzotriazole, CHLORIDE ION, Casein kinase II subunit alpha, ...
Authors:Czapinska, H, Piasecka, A, Winiewska-Szajewska, M, Bochtler, M, Poznanski, J.
Deposit date:2019-12-03
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Halogen Atoms in the Protein-Ligand System. Structural and Thermodynamic Studies of the Binding of Bromobenzotriazoles by the Catalytic Subunit of Human Protein Kinase CK2.
J.Phys.Chem.B, 125, 2021
1HDA
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BU of 1hda by Molmil
A NOVEL ALLOSTERIC MECHANISM IN HAEMOGLOBIN. STRUCTURE OF BOVINE DEOXYHAEMOGLOBIN, ABSENCE OF SPECIFIC CHLORIDE-BINDING SITES AND ORIGIN OF THE CHLORIDE-LINKED BOHR EFFECT IN BOVINE AND HUMAN HAEMOGLOBIN
Descriptor: HEMOGLOBIN (DEOXY) (ALPHA CHAIN), HEMOGLOBIN (DEOXY) (BETA CHAIN), PROTOPORPHYRIN IX CONTAINING FE
Authors:Fermi, G.
Deposit date:1993-05-06
Release date:1994-05-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A novel allosteric mechanism in haemoglobin. Structure of bovine deoxyhaemoglobin, absence of specific chloride-binding sites and origin of the chloride-linked Bohr effect in bovine and human haemoglobin.
J.Mol.Biol., 233, 1993
6TK2
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BU of 6tk2 by Molmil
Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ms structure of KR2 with extrapolated, light and dark datasets
Descriptor: EICOSANE, RETINAL, SODIUM ION, ...
Authors:Skopintsev, P, Ehrenberg, D, Weinert, T, James, D, Kar, R, Johnson, P, Ozerov, D, Furrer, A, Martiel, I, Dworkowski, F, Nass, K, Knopp, G, Cirelli, C, Gashi, D, Mous, S, Wranik, M, Gruhl, T, Kekilli, D, Bruenle, S, Deupi, X, Schertler, G.F.X, Benoit, R, Panneels, V, Nogly, P, Schapiro, I, Milne, C, Heberle, J, Standfuss, J.
Deposit date:2019-11-28
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Femtosecond-to-millisecond structural changes in a light-driven sodium pump.
Nature, 583, 2020
6TLL
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BU of 6tll by Molmil
HUMAN CK2 KINASE ALPHA SUBUNIT IN COMPLEX WITH THE ATP-COMPETITIVE INHIBITOR 4,5,6,7-TETRABROMOBENZOTRIAZOLE (tBBT)
Descriptor: 4,5,6,7-TETRABROMOBENZOTRIAZOLE, CHLORIDE ION, Casein kinase II subunit alpha, ...
Authors:Czapinska, H, Piasecka, A, Winiewska-Szajewska, M, Bochtler, M, Poznanski, J.
Deposit date:2019-12-03
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Halogen Atoms in the Protein-Ligand System. Structural and Thermodynamic Studies of the Binding of Bromobenzotriazoles by the Catalytic Subunit of Human Protein Kinase CK2.
J.Phys.Chem.B, 125, 2021
5HI0
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BU of 5hi0 by Molmil
The Substrate Binding Mode and Chemical Basis of a Reaction Specificity Switch in Oxalate Decarboxylase
Descriptor: COBALT (II) ION, OXALATE ION, Oxalate decarboxylase OxdC, ...
Authors:Zhu, W, Easthon, L.M, Reinhardt, L.A, Tu, C, Cohen, S.E, Silverman, D.N, Allen, K.N, Richards, N.G.J.
Deposit date:2016-01-11
Release date:2016-04-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Substrate Binding Mode and Molecular Basis of a Specificity Switch in Oxalate Decarboxylase.
Biochemistry, 55, 2016
5TNZ
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BU of 5tnz by Molmil
HtrA2 S142D mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SODIUM ION, Serine protease HTRA2, ...
Authors:Macedo-Ribeiro, S, Merski, M, Pereira, P.J.B.
Deposit date:2016-10-15
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular motion regulates the activity of the Mitochondrial Serine Protease HtrA2.
Cell Death Dis, 8, 2017
6THV
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BU of 6thv by Molmil
X-ray structure of the Danio rerio histone deacetylase 6 (HDAC6; catalytic domain 2) in complex with Tubastatin A
Descriptor: 1,2-ETHANEDIOL, 4-[(2-methyl-3,4-dihydro-1~{H}-pyrido[4,3-b]indol-5-yl)methyl]-~{N}-oxidanyl-benzamide, DI(HYDROXYETHYL)ETHER, ...
Authors:Barinka, C, Motlova, L, Svoboda, M.
Deposit date:2019-11-21
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structural and in Vivo Characterization of Tubastatin A, a Widely Used Histone Deacetylase 6 Inhibitor.
Acs Med.Chem.Lett., 11, 2020
6HON
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BU of 6hon by Molmil
Drosophila NOT4 CBM peptide bound to human CAF40
Descriptor: CCR4-NOT transcription complex subunit 4, isoform L, CCR4-NOT transcription complex subunit 9, ...
Authors:Raisch, T, Izaurralde, E, Weichenrieder, O.
Deposit date:2018-09-17
Release date:2019-02-06
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A conserved CAF40-binding motif in metazoan NOT4 mediates association with the CCR4-NOT complex.
Genes Dev., 33, 2019
5E1I
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BU of 5e1i by Molmil
Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 2 with carbapenem drug T210
Descriptor: (2S,3R,4R)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-4-(methylsulfanyl)-3,4-dihydro-2H-pyrrole-5-carboxylic acid, GLYCEROL, L,D-transpeptidase 2, ...
Authors:Kumar, P, Ginell, S.L, Lamichhane, G.
Deposit date:2015-09-29
Release date:2016-10-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Non-classical transpeptidases yield insight into new antibacterials.
Nat. Chem. Biol., 13, 2017
2CKS
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BU of 2cks by Molmil
X-RAY CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THERMOBIFIDA FUSCA ENDOGLUCANASE CEL5A (E5)
Descriptor: BENZAMIDINE, ENDOGLUCANASE E-5, SODIUM ION, ...
Authors:Berglund, G.I, Gualfetti, P.J, Requadt, C, Gross, L.S, Bergfors, T, Shaw, A, Saldajeno, M, Mitchinson, C, Sandgren, M.
Deposit date:2006-04-21
Release date:2007-05-29
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Crystal Structure of the Catalytic Domain of Thermobifida Fusca Endoglucanase Cel5A in Complex with Cellotetraose
To be Published
5DMU
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BU of 5dmu by Molmil
Structure of the NHEJ polymerase from Methanocella paludicola
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, NHEJ Polymerase, ...
Authors:Brissett, N.C, Bartlett, E.J, Doherty, A.J.
Deposit date:2015-09-09
Release date:2015-10-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:Molecular basis for DNA strand displacement by NHEJ repair polymerases.
Nucleic Acids Res., 44, 2016
6TK1
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BU of 6tk1 by Molmil
Femtosecond to millisecond structural changes in a light-driven sodium pump: 20ms structure of KR2 with extrapolated, light and dark datasets
Descriptor: EICOSANE, RETINAL, SODIUM ION, ...
Authors:Skopintsev, P, Ehrenberg, D, Weinert, T, James, D, Kar, R, Johnson, P, Ozerov, D, Furrer, A, Martiel, I, Dworkowski, F, Nass, K, Knopp, G, Cirelli, C, Gashi, D, Mous, S, Wranik, M, Gruhl, T, Kekilli, D, Bruenle, S, Deupi, X, Schertler, G.F.X, Benoit, R, Panneels, V, Nogly, P, Schapiro, I, Milne, C, Heberle, J, Standfuss, J.
Deposit date:2019-11-28
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Femtosecond-to-millisecond structural changes in a light-driven sodium pump.
Nature, 583, 2020
5T91
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BU of 5t91 by Molmil
Crystal structure of B. subtilis 168 GlpQ in complex with bicine
Descriptor: BICINE, CALCIUM ION, Glycerophosphoryl diester phosphodiesterase, ...
Authors:Li, F.K.K, Strynadka, N.C.J.
Deposit date:2016-09-09
Release date:2016-11-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component.
J. Biol. Chem., 291, 2016
6TQP
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BU of 6tqp by Molmil
Structural insight into tanapoxvirus mediated inhibition of apoptosis
Descriptor: 16L protein, Bcl-2-binding component 3, isoforms 1/2, ...
Authors:Suraweera, C.D, Hinds, M.G, Kvansakul, M.
Deposit date:2019-12-17
Release date:2020-06-03
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.84940946 Å)
Cite:Structural insight into tanapoxvirus-mediated inhibition of apoptosis.
Febs J., 287, 2020
6HHD
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BU of 6hhd by Molmil
Mouse Prion Protein in complex with Nanobody 484
Descriptor: CHLORIDE ION, GLYCEROL, Major prion protein, ...
Authors:Soror, S, Abskharon, R, Wohlkonig, A.
Deposit date:2018-08-28
Release date:2019-12-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structural evidence for the critical role of the prion protein hydrophobic region in forming an infectious prion.
Plos Pathog., 15, 2019
5HKY
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BU of 5hky by Molmil
Crystal structure of c-Cbl TKBD domain in complex with SPRY2 peptide (36-60, pY55) Refined to 1.8A Resolution (P6 form)
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase CBL, PENTAETHYLENE GLYCOL, ...
Authors:Lovell, S, Battaile, K.P, Mehzabeen, N, Zhang, N, Cooper, A, Gao, P, Perez, R.P.
Deposit date:2016-01-14
Release date:2017-01-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of c-Cbl TKBD domain in complex with SPRY2 peptide (36-60, pY55) Refined to 1.8A Resolution (P6 form)
To be published

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