PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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5AGV	The sliding clamp of Mycobacterium tuberculosis in complex with a natural product. Descriptor: (R,R)-2,3-BUTANEDIOL, CALCIUM ION, CYCLOHEXYL GRISELIMYCIN, ... Authors: Lukat, P, Kling, A, Heinz, D.W, Mueller, R. Deposit date: 2015-02-03 Release date: 2015-06-03 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Antibiotics. Targeting Dnan for Tuberculosis Therapy Using Novel Griselimycins. Science, 348, 2015
2HTS	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF THE HEAT SHOCK TRANSCRIPTION FACTOR Descriptor: ACETIC ACID, HEAT-SHOCK TRANSCRIPTION FACTOR Authors: Harrison, C, Nelson, H. Deposit date: 1994-06-02 Release date: 1995-02-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Crystal structure of the DNA binding domain of the heat shock transcription factor. Science, 263, 1994
6USJ	Structure of two nucleosomes bridged by human PARP2 Descriptor: Histone H2A, Histone H2B type 1-J, Histone H3.1, ... Authors: Gaullier, G, Bowerman, S, Luger, K. Deposit date: 2019-10-27 Release date: 2020-10-14 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (10.5 Å) Cite: Bridging of nucleosome-proximal DNA double-strand breaks by PARP2 enhances its interaction with HPF1. Plos One, 15, 2020
8FI8	Structure of Lettuce C20T bound to DFAME Descriptor: Lettuce DNA aptamer, MAGNESIUM ION, POTASSIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
8FHZ	Structure of Lettuce aptamer bound to DFHO Descriptor: (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
8FHV	Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions Descriptor: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
8FI2	Structure of Lettuce C20T bound to DFHBI-1T Descriptor: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
8FI1	Structure of Lettuce C20G bound to DFHO Descriptor: (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
8FI0	Structure of Lettuce aptamer bound to DFAME Descriptor: Lettuce DNA aptamer, MAGNESIUM ION, POTASSIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
8FI7	Structure of Lettuce C20T bound to DFHO Descriptor: (5Z)-5-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-2-[(E)-(hydroxyimino)methyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
8FHX	Structure of Lettuce aptamer bound to DFHBI-1T Descriptor: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2022-12-15 Release date: 2023-05-10 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
3D4V	Crystal Structure of an AlkA Host/Guest Complex N7MethylGuanine:Cytosine Base Pair Descriptor: 5'-D(*DGP*DAP*DCP*DAP*DTP*DGP*DAP*(FMG)P*DTP*DGP*DCP*DC)-3', 5'-D(*DGP*DGP*DCP*DAP*DCP*DTP*DCP*DAP*DTP*DGP*DTP*DC)-3', DNA-3-methyladenine glycosylase 2 Authors: Lee, S, Bowman, B.R, Wang, S, Verdine, G.L. Deposit date: 2008-05-15 Release date: 2008-09-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Synthesis and structure of duplex DNA containing the genotoxic nucleobase lesion N7-methylguanine. J.Am.Chem.Soc., 130, 2008
2VJV	Crystal structure of the IS608 transposase in complex with left end 26-mer DNA hairpin and a 6-mer DNA representing the left end cleavage site Descriptor: 5'-D(*DA*DA*DA*DG*DC*DC*DC*DC*DT*DA*DG*DC*DTP*DT *DT*DT*DA*DG*DC*DT*DA*DT*DG*DG*DG*DGP)-3', 5'-D(*DT*DA*DT*DT*DA*DCP)-3', MAGNESIUM ION, ... Authors: Barabas, O, Ronning, D.R, Guynet, C, Hickman, A.B, Ton-Hoang, B, Chandler, M, Dyda, F. Deposit date: 2007-12-13 Release date: 2008-02-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection. Cell(Cambridge,Mass.), 132, 2008
2VIC	CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE IN COMPLEX with Left end 26- mer DNA and manganese Descriptor: 5'-D(*AP*AP*AP*GP*CP*CP*CP*CP*TP*AP *GP*CP*TP*TP*TP*TP*AP*GP*CP*TP*AP*TP*GP*GP*GP*G)-3', MANGANESE (II) ION, TRANSPOSASE ORFA Authors: Barabas, O, Ronning, D.R, Guynet, C, Hickman, A.B, Ton-Hoang, B, Chandler, M, Dyda, F. Deposit date: 2007-11-29 Release date: 2008-02-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection. Cell(Cambridge,Mass.), 132, 2008
8PNA	transcription factor BARHL2 bound to TAATG DNA sequence Descriptor: ACETATE ION, BarH-like 2 homeobox protein, DNA Authors: Morgunova, E, Popov, A, Yin, Y, Taipale, J. Deposit date: 2023-06-30 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.45 Å) Cite: transcription factor BARHL2 bound to different DNA sequences To Be Published
3JYT	K65R mutant HIV-1 reverse transcriptase cross-linked to DS-DNA and complexed with DATP as the incoming nucleotide substrate Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(*A*TP*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3'), ... Authors: Das, K, Arnold, E. Deposit date: 2009-09-22 Release date: 2009-10-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural basis for the role of the K65r mutation in HIV-1 reverse transcriptase polymerization, excision antagonism, and tenofovir resistance. J.Biol.Chem., 284, 2009
5WM8	Structure of the 10R (+)-cis-BP-dG modified Rev1 ternary complex Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, 1,2-ETHANEDIOL, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, ... Authors: Rechkoblit, O, Kolbanovsky, A, Landes, H, Geacintov, N.E, Aggarwal, A.K. Deposit date: 2017-07-28 Release date: 2017-10-25 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Mechanism of error-free replication across benzo[a]pyrene stereoisomers by Rev1 DNA polymerase. Nat Commun, 8, 2017
4LB5	Crystal structure of PKZ Zalpha in complex with ds(CG)6 (hexagonal form) Descriptor: 5'-D(*TP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3', ACETATE ION, Protein kinase containing Z-DNA binding domains Authors: De Rosa, M, Zacarias, S, Athanasiadis, A. Deposit date: 2013-06-20 Release date: 2013-09-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis for Z-DNA binding and stabilization by the zebrafish Z-DNA dependent protein kinase PKZ. Nucleic Acids Res., 41, 2013
4LB6	Crystal structure of PKZ Zalpha in complex with ds(CG)6 (tetragonal form) Descriptor: 5'-D(*TP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3', Protein kinase containing Z-DNA binding domains Authors: De Rosa, M, Zacarias, S, Athanasiadis, A. Deposit date: 2013-06-20 Release date: 2013-09-18 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for Z-DNA binding and stabilization by the zebrafish Z-DNA dependent protein kinase PKZ. Nucleic Acids Res., 41, 2013
1JXS	Solution Structure of the DNA-Binding Domain of Interleukin Enhancer Binding Factor Descriptor: interleukin enhancer binding factor Authors: Chuang, W.J, Liu, P.P, Li, C, Hsieh, Y.H, Chen, S.W, Chen, S.H, Jeng, W.Y. Deposit date: 2001-09-08 Release date: 2003-03-11 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the DNA-binding domain of interleukin enhancer binding factor 1 (FOXK1a) PROTEINS: STRUCT.,FUNCT.,GENET., 49, 2002
8V7I	Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 1 mM Mg2+ for 1800s Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*A)-R(P*(CAR))-3'), DNA (5'-D(*CP*AP*TP*TP*GP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Chang, C, Gao, Y. Deposit date: 2023-12-04 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 1 mM Mg2+ for 1800s To Be Published
8V7A	Human DNA polymerase eta-DNA-dT primer dCTP insertion ternary complex at pH7.0 (K+ MES) with 1 Ca2+ ion Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T*())-3'), ... Authors: Chang, C, Gao, Y. Deposit date: 2023-12-04 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Human DNA polymerase eta-DNA-dT primer dCTP insertion ternary complex at pH7.0 (K+ MES) with 1 Ca2+ ion To Be Published
8V7C	Human DNA polymerase eta-DNA-dT primer gemCTP insertion ternary complex at pH7.0 (K+ MES) with 1 Ca2+ ion Descriptor: 2'-deoxy-2',2'-difluorocytidine 5'-(tetrahydrogen triphosphate), CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T*())-3'), ... Authors: Chang, C, Gao, Y. Deposit date: 2023-12-04 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Human DNA polymerase eta-DNA-dT primer gemCTP insertion ternary complex at pH7.0 (K+ MES) with 1 Ca2+ ion To Be Published
8V7K	Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 10 mM Mn2+ for 1800s Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*A)-R(P*(CAR))-3'), DNA (5'-D(*CP*AP*TP*TP*GP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Chang, C, Gao, Y. Deposit date: 2023-12-04 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 10 mM Mn2+ for 1800s To Be Published
8V7J	Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 20 mM Mg2+ for 600s Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*A)-R(P*(CAR))-3'), DNA (5'-D(*CP*AP*TP*TP*GP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Chang, C, Gao, Y. Deposit date: 2023-12-04 Release date: 2024-05-15 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Human DNA polymerase eta-DNA-araC-ended primer ternary complex:reaction with 20 mM Mg2+ for 600s To Be Published

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