PDB: 5578 resultsInfo pagesStatus searchChemie searchBIRD

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5JA4	Crystal structure of human TONSL and MCM2 HBDs binding to a histone H3-H4 tetramer Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA replication licensing factor MCM2, GLYCEROL, ... Authors: Huang, H, Patel, D. Deposit date: 2016-04-11 Release date: 2016-06-15 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.424 Å) Cite: H4K20me0 marks post-replicative chromatin and recruits the TONSL-MMS22L DNA repair complex. Nature, 534, 2016
5JRG	Crystal structure of the nucleosome containing the DNA with tetrahydrofuran (THF) Descriptor: CHLORIDE ION, DNA (145-MER), Histone H2A type 1-B/E, ... Authors: Osakabe, A, Arimura, Y, Horikoshi, N, Kurumizaka, H. Deposit date: 2016-05-06 Release date: 2017-03-08 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Polymorphism of apyrimidinic DNA structures in the nucleosome Sci Rep, 7, 2017
5KDM	Crystal structure of EBV tegument protein BNRF1 in complex with histone chaperone DAXX and histones H3.3-H4 Descriptor: Death domain-associated protein 6, Histone H3.3, Histone H4, ... Authors: Huang, H, Patel, D. Deposit date: 2016-06-08 Release date: 2016-09-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis underlying viral hijacking of a histone chaperone complex. Nat Commun, 7, 2016
5KGF	Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution Descriptor: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... Authors: Wilson, M.D, Benlekbir, S, Sicheri, F, Rubinstein, J.L, Durocher, D. Deposit date: 2016-06-13 Release date: 2016-07-27 Last modified: 2020-01-15 Method: ELECTRON MICROSCOPY (4.54 Å) Cite: The structural basis of modified nucleosome recognition by 53BP1. Nature, 536, 2016
2XSZ	The dodecameric human RuvBL1:RuvBL2 complex with truncated domains II Descriptor: ADENOSINE-5'-TRIPHOSPHATE, RUVB-LIKE 1, RUVB-LIKE 2 Authors: Gorynia, S, Bandeiras, T.M, Matias, P.M, Pinho, F.G, McVey, C.E, Vonrhein, C, Svergun, D.I, Round, A, Donner, P, Carrondo, M.A. Deposit date: 2010-10-01 Release date: 2011-10-05 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural and Functional Insights Into a Dodecameric Molecular Machine - the Ruvbl1/Ruvbl2 Complex. J.Struct.Biol., 176, 2011
2YYN	Crystal structure of human bromodomain protein Descriptor: Transcription intermediary factor 1-alpha Authors: Kishishita, S, Uchikubo-Kamo, T, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-30 Release date: 2008-05-06 Last modified: 2022-12-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of human bromodomain protein To be Published
2XV5	Human lamin A coil 2B fragment Descriptor: LAMIN-A/C Authors: Kapinos, L.E, Burkhard, P, Aebi, U, Herrmann, H, Strelkov, S.V. Deposit date: 2010-10-22 Release date: 2011-03-09 Last modified: 2019-03-06 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Simultaneous Formation of Right- and Left-Handed Anti-Parallel Coiled-Coil Interfaces by a Coil2 Fragment of Human Lamin A. J.Mol.Biol., 408, 2011
2YT4	Crystal structure of human DGCR8 core Descriptor: Protein DGCR8 Authors: Cho, Y, Sohn, S.Y. Deposit date: 2007-04-05 Release date: 2007-08-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of human DGCR8 core Nat.Struct.Mol.Biol., 14, 2007
1H8A	CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3 Descriptor: CAAT/ENHANCER BINDING PROTEIN BETA, DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3'), ... Authors: Tahirov, T.H, Ogata, K. Deposit date: 2001-01-31 Release date: 2002-01-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.23 Å) Cite: Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter Cell(Cambridge,Mass.), 108, 2002
1H88	CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1 Descriptor: AMMONIUM ION, CCAAT/ENHANCER BINDING PROTEIN BETA, DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), ... Authors: Tahirov, T.H, Ogata, K. Deposit date: 2001-01-29 Release date: 2002-01-28 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Mechanism of C-Myb-C/Ebpbeta Cooperation from Separated Sites on a Promoter Cell(Cambridge,Mass.), 108, 2002
1FJE	SOLUTION STRUCTURE OF NUCLEOLIN RBD12 IN COMPLEX WITH SNRE RNA Descriptor: NUCLEOLIN RBD12, SNRE RNA Authors: Allain, F.H.T, Bouvet, P, Dieckmann, T, Feigon, J. Deposit date: 2000-08-08 Release date: 2001-01-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Molecular basis of sequence-specific recognition of pre-ribosomal RNA by nucleolin. EMBO J., 19, 2000
1GTW	crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter Descriptor: 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA Authors: Tahirov, T.H, Ogata, K. Deposit date: 2002-01-22 Release date: 2004-02-06 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published
1GU4	Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment Descriptor: 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3', CAAT/ENHANCER BINDING PROTEIN BETA Authors: Tahirov, T.H, Ogata, K. Deposit date: 2002-01-23 Release date: 2003-06-26 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published
1GU5	Crystal structure of C/EBPBETA BZIP homodimer bound to a DNA fragment from the MIM-1 promoter Descriptor: 5'-D(*AP*TP*GP*AP*TP*TP*GP*GP*CP*CP* AP*AP*CP*AP*CP*A)-3', 5'-D(*TP*TP*GP*TP*GP*TP*TP*GP*GP*CP* CP*AP*AP*TP*CP*A)-3', CAAT/ENHANCER BINDING PROTEIN BETA Authors: Tahirov, T.H, Ogata, K. Deposit date: 2002-01-24 Release date: 2003-06-26 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural Basis for Flexible Base Recognition by C/Ebpbeta To be Published
1GK7	HUMAN VIMENTIN COIL 1A FRAGMENT (1A) Descriptor: SULFATE ION, VIMENTIN Authors: Strelkov, S.V, Herrmann, H, Geisler, N, Zimbelmann, R, Aebi, U, Burkhard, P. Deposit date: 2001-08-08 Release date: 2002-03-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Conserved Segments 1A and 2B of the Intermediate Filament Dimer: Their Atomic Structures and Role in Filament Assembly. Embo J., 21, 2002
1FJ7	SOLUTION STRUCTURE OF NUCLEOLIN RBD1 Descriptor: NUCLEOLIN RBD1 Authors: Allain, F.H.-T, Gilbert, D.E, Bouvet, P, Feigon, J. Deposit date: 2000-08-07 Release date: 2000-10-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the two N-terminal RNA-binding domains of nucleolin and NMR study of the interaction with its RNA target. J.Mol.Biol., 303, 2000
5T2C	CryoEM structure of the human ribosome at 3.6 Angstrom resolution Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Zhang, X, Lai, M, Zhou, Z.H. Deposit date: 2016-08-23 Release date: 2017-01-25 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes. Nat Commun, 7, 2016
1HJB	CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER Descriptor: CCAAT/ENHANCER BINDING PROTEIN BETA, DNA (5'-(*CP*CP*GP*CP*AP*AP*CP*CP*AP*CP* AP*GP*AP*GP*TP*TP*TP*GP*GP*AP*AP*AP*TP*CP*TP*T)-3'), DNA (5'-(*GP*AP*AP*GP*AP*TP*TP*TP*CP*CP* AP*AP*AP*CP*TP*CP*TP*GP*TP*GP*GP*TP*TP*GP*CP*G)-3'), ... Authors: Tahirov, T.H, Ogata, K. Deposit date: 2001-01-11 Release date: 2001-03-09 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Analyses of DNA Recognition by the Aml1/Runx-1 Runt Domain and its Allosteric Control by Cbfbeta Cell(Cambridge,Mass.), 104, 2001
5VMU	Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS) Descriptor: CHLORIDE ION, DNA (5'-D(*CP*GP*TP*TP*AP*TP*TP*(5CM)P*GP*(5CM)P*GP*GP*GP*AP*AP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*TP*TP*CP*CP*(5CM)P*GP*(5CM)P*GP*AP*AP*TP*AP*AP*CP*G)-3'), ... Authors: Nikolova, E.N, Stanfield, R.L, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E. Deposit date: 2017-04-28 Release date: 2018-04-04 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.346 Å) Cite: CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso. Biochemistry, 57, 2018
5VMZ	Kaiso (ZBTB33) E535Q mutant zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS) Descriptor: CHLORIDE ION, DNA (5'-D(*CP*GP*TP*TP*AP*TP*TP*(5CM)P*GP*(5CM)P*GP*GP*GP*AP*AP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*TP*TP*CP*CP*(5CM)P*GP*(5CM)P*GP*AP*AP*TP*AP*AP*CP*G)-3'), ... Authors: Nikolova, E.N, Stanfield, R.L, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E. Deposit date: 2017-04-28 Release date: 2018-04-04 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.319 Å) Cite: CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso. Biochemistry, 57, 2018
5VMX	Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a hemi CpG-methylated DNA resembling the specific Kaiso binding sequence (KBS) Descriptor: CHLORIDE ION, DNA (5'-D(*CP*GP*TP*TP*AP*TP*TP*CP*GP*CP*GP*GP*GP*AP*AP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*TP*TP*CP*CP*(5CM)P*GP*(5CM)P*GP*AP*AP*TP*AP*AP*CP*G)-3'), ... Authors: Nikolova, E.N, Stanfield, R.L, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E. Deposit date: 2017-04-28 Release date: 2018-04-04 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.05 Å) Cite: CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso. Biochemistry, 57, 2018
5VMV	Kaiso (ZBTB33) zinc finger DNA binding domain in complex with its double CpG-methylated DNA consensus binding site Descriptor: CHLORIDE ION, DNA (5'-D(*TP*GP*CP*TP*TP*CP*TP*(5CM)P*GP*(5CM)P*GP*AP*GP*AP*AP*GP*CP*A)-3'), Transcriptional regulator Kaiso, ... Authors: Nikolova, E.N, Stanfield, R.L, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E. Deposit date: 2017-04-28 Release date: 2018-04-04 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.313 Å) Cite: CH···O Hydrogen Bonds Mediate Highly Specific Recognition of Methylated CpG Sites by the Zinc Finger Protein Kaiso. Biochemistry, 57, 2018
1F3W	RECOMBINANT RABBIT MUSCLE PYRUVATE KINASE Descriptor: MANGANESE (II) ION, POTASSIUM ION, PYRUVATE KINASE, ... Authors: Wooll, J.O, Friesen, R.H.E, White, M.A, Watowich, S.J, Fox, R.O, Lee, J.C, Czerwinski, E.W. Deposit date: 2000-06-06 Release date: 2001-10-03 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural and functional linkages between subunit interfaces in mammalian pyruvate kinase. J.Mol.Biol., 312, 2001
1F3X	S402P MUTANT OF RABBIT MUSCLE PYRUVATE KINASE Descriptor: MANGANESE (II) ION, POTASSIUM ION, PYRUVATE KINASE, ... Authors: Wooll, J.O, Friesen, R.H.E, White, M.A, Watowich, S.J, Fox, R.O, Lee, J.C, Czerwinski, E.W. Deposit date: 2000-06-06 Release date: 2001-10-03 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and functional linkages between subunit interfaces in mammalian pyruvate kinase. J.Mol.Biol., 312, 2001
1J5K	COMPLEX OF THE KH3 DOMAIN OF HNRNP K WITH A SINGLE_STRANDED 10MER DNA OLIGONUCLEOTIDE Descriptor: 5'-D(*AP*TP*AP*T*TP*CP*CP*CP*TP*C)-3', Heterogeneous nuclear ribonucleoprotein K Authors: Clore, G.M, Braddock, D.T. Deposit date: 2002-05-13 Release date: 2002-07-10 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Molecular basis of sequence-specific single-stranded DNA recognition by KH domains: solution structure of a complex between hnRNP K KH3 and single-stranded DNA. EMBO J., 21, 2002

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