Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2BL2
DownloadVisualize
BU of 2bl2 by Molmil
The membrane rotor of the V-type ATPase from Enterococcus hirae
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, SODIUM ION, UNDECYL-MALTOSIDE, ...
Authors:Murata, T, Yamato, I, Kakinuma, Y, Leslie, A.G.W, Walker, J.E.
Deposit date:2005-02-25
Release date:2005-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the Rotor of the Vacuolar-Type Na- ATPase from Enterococcus Hirae
Science, 308, 2005
1W21
DownloadVisualize
BU of 1w21 by Molmil
Structure of Neuraminidase from English duck subtype N6 complexed with 30 mM sialic acid (NANA, Neu5Ac), crystal soaked for 43 hours at 291 K.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Rudino-Pinera, E, Tunnah, P, Crennell, S.J, Webster, R.G, Laver, W.G, Garman, E.F.
Deposit date:2004-06-25
Release date:2006-01-25
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:The Crystal Structure of Type a Influenza Virus Neuraminidase of the N6 Subtype Reveals the Existence of Two Separate Neu5Ac Binding Sites
To be Published
2C6D
DownloadVisualize
BU of 2c6d by Molmil
Aurora A kinase activated mutant (T287D) in complex with ADPNP
Descriptor: GLYCEROL, PHOSPHATE ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Pauptit, R.A, Pannifer, A.D, Breed, J, McMiken, H.H.J, Rowsell, S, Anderson, M.
Deposit date:2005-11-09
Release date:2006-01-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Sar and Inhibitor Complex Structure Determination of a Novel Class of Potent and Specific Aurora Kinase Inhibitors.
Bioorg.Med.Chem.Lett., 16, 2006
3J70
DownloadVisualize
BU of 3j70 by Molmil
Model of gp120, including variable regions, in complex with CD4 and 17b
Descriptor: Envelope glycoprotein gp120, T-cell surface glycoprotein CD4, envelope glycoprotein gp41, ...
Authors:Rasheed, M, Bettadapura, R, Bajaj, C.
Deposit date:2014-04-22
Release date:2015-08-26
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Computational Refinement and Validation Protocol for Proteins with Large Variable Regions Applied to Model HIV Env Spike in CD4 and 17b Bound State.
Structure, 23, 2015
5UTU
DownloadVisualize
BU of 5utu by Molmil
2.65 Angstrom Resolution Crystal Structure of S-adenosylhomocysteinase from Cryptosporidium parvum in Complex with SAH and NAD
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, ADENOSINE, Adenosylhomocysteinase, ...
Authors:Minasov, G, Shuvalova, L, Dubrovska, I, Winsor, J, Stam, J, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-02-15
Release date:2017-03-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:2.65 Angstrom Resolution Crystal Structure of S-adenosylhomocysteinase from Cryptosporidium parvum in Complex with SAH and NAD
To Be Published
4CRB
DownloadVisualize
BU of 4crb by Molmil
Creating novel F1 inhibitors through fragment based lead generation and structure aided drug design
Descriptor: COAGULATION FACTOR XI, GLYCEROL, N-[(1S)-1-benzyl-2-[2-[5-chloro-2-(tetrazol-1-yl)phenyl]ethylamino]-2-oxo-ethyl]-4-hydroxy-2-oxo-1H-quinoline-6-carboxamide, ...
Authors:Sandmark, J, Oster, L, Fjellstrom, O, Akkaya, S, Beisel, H.G, Eriksson, P.O, Erixon, K, Gustafsson, D, Jurva, U, Kang, D, Karis, D, Knecht, W, Nerme, V, Nilsson, I, Olsson, T, Redzic, A, Roth, R, Tigerstrom, A.
Deposit date:2014-02-26
Release date:2015-02-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Creating Novel Activated Factor Xi Inhibitors Through Fragment Based Lead Generation and Structure Aided Drug Design.
Plos One, 10, 2015
4KS3
DownloadVisualize
BU of 4ks3 by Molmil
Influenza Neuraminidase in complex with antiviral compound (3S,4R,5R)-4-(acetylamino)-3-[4-(3-hydroxypropyl)-1H-1,2,3-triazol-1-yl]-5-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid
Descriptor: (3S,4R,5R)-4-(acetylamino)-3-[4-(3-hydroxypropyl)-1H-1,2,3-triazol-1-yl]-5-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, CALCIUM ION, Neuraminidase
Authors:Kerry, P.S, Russell, R.J.M.
Deposit date:2013-05-17
Release date:2013-10-30
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for a class of nanomolar influenza A neuraminidase inhibitors.
Sci Rep, 3, 2013
5QCV
DownloadVisualize
BU of 5qcv by Molmil
Crystal structure of BACE complex with BMC023
Descriptor: (10S,13S)-13-[(1R)-1-hydroxy-2-({[3-(propan-2-yl)phenyl]methyl}amino)ethyl]-9,10-dimethyl-2-oxa-9,12-diazabicyclo[13.3.1]nonadeca-1(19),15,17-triene-8,11-dione, Beta-secretase 1
Authors:Rondeau, J.M, Shao, C, Yang, H, Burley, S.K.
Deposit date:2017-12-01
Release date:2020-06-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies.
J.Comput.Aided Mol.Des., 34, 2020
5UZX
DownloadVisualize
BU of 5uzx by Molmil
Crystal Structure of Putative short-chain dehydrogenase/reductase from Burkholderia multivorans with bound NADP
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2017-02-27
Release date:2017-03-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Putative short-chain dehydrogenase/reductase from Burkholderia multivorans with bound NADP
to be published
3PW5
DownloadVisualize
BU of 3pw5 by Molmil
Ternary complex of Aflatoxin B1 Adduct modified DNA (AFB1-N7-Gua) with DNA Polymerase IV and incoming dTTP
Descriptor: 8,9-DIHYDRO-9-HYDROXY-AFLATOXIN B1, CALCIUM ION, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), ...
Authors:Banerjee, S.
Deposit date:2010-12-07
Release date:2011-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Bypass of Aflatoxin B(1) Adducts by the Sulfolobus solfataricus DNA Polymerase IV.
J.Am.Chem.Soc., 133, 2011
5QDZ
DownloadVisualize
BU of 5qdz by Molmil
PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000435a
Descriptor: (azepan-1-yl)(2H-1,3-benzodioxol-5-yl)methanone, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Tyrosine-protein phosphatase non-receptor type 1
Authors:Keedy, D.A, Hill, Z.B, Biel, J.T, Kang, E, Rettenmaier, T.J, Brandao-Neto, J, von Delft, F, Wells, J.A, Fraser, J.S.
Deposit date:2018-08-30
Release date:2018-10-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.141 Å)
Cite:An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering.
Elife, 7, 2018
6BXW
DownloadVisualize
BU of 6bxw by Molmil
Crystal structure of Toxoplasma gondii Mitochondrial Association Factor 1 B (MAF1B) in complex with ADPribose
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, Mitochondrial association factor 1
Authors:Parker, M.L, Ramaswamy, R, Boulanger, M.J.
Deposit date:2017-12-19
Release date:2018-12-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A Toxoplasma gondii locus required for the direct manipulation of host mitochondria has maintained multiple ancestral functions.
Mol. Microbiol., 108, 2018
4R5S
DownloadVisualize
BU of 4r5s by Molmil
Crystal structure of EGFR 696-1022 L858R in complex with FIIN-3
Descriptor: Epidermal growth factor receptor, N-[4-({[(2,6-dichloro-3,5-dimethoxyphenyl)carbamoyl](6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)amino}methyl)phenyl]propanamide
Authors:Zhu, S.J, Yun, C.H.
Deposit date:2014-08-22
Release date:2014-11-12
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:Development of covalent inhibitors that can overcome resistance to first-generation FGFR kinase inhibitors.
Proc.Natl.Acad.Sci.USA, 111, 2014
4TRR
DownloadVisualize
BU of 4trr by Molmil
Crystal structure of a putative Putative D-beta-hydroxybutyrate dehydrogenase from Burkholderia cenocepacia J2315
Descriptor: 1,2-ETHANEDIOL, Putative D-beta-hydroxybutyrate dehydrogenase, SULFATE ION
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2014-06-17
Release date:2014-08-06
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a putative Putative D-beta-hydroxybutyrate dehydrogenase from Burkholderia cenocepacia J2315
to be published
5UDZ
DownloadVisualize
BU of 5udz by Molmil
Human LIN28A in complex with let-7f-1 microRNA pre-element
Descriptor: Protein lin-28 homolog A, ZINC ION, let-7f-1 pre-element
Authors:Nam, Y, Wang, L, Sliz, P.
Deposit date:2016-12-29
Release date:2017-03-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:LIN28 Zinc Knuckle Domain Is Required and Sufficient to Induce let-7 Oligouridylation.
Cell Rep, 18, 2017
5UE4
DownloadVisualize
BU of 5ue4 by Molmil
proMMP-9desFnII complexed to JNJ0966 INHIBITOR
Descriptor: CALCIUM ION, Matrix metalloproteinase-9, SULFATE ION, ...
Authors:Alexander, R.S, Spurlino, J, Milligan, C.
Deposit date:2016-12-29
Release date:2017-09-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of a highly selective chemical inhibitor of matrix metalloproteinase-9 (MMP-9) that allosterically inhibits zymogen activation.
J. Biol. Chem., 292, 2017
4FCH
DownloadVisualize
BU of 4fch by Molmil
Crystal Structure SusE from Bacteroides thetaiotaomicron with maltoheptaose
Descriptor: 1,2-ETHANEDIOL, Outer membrane protein SusE, SULFATE ION, ...
Authors:Koropatkin, N.M, Cameron, E.A, Martens, E.C.
Deposit date:2012-05-24
Release date:2012-08-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
7GAU
DownloadVisualize
BU of 7gau by Molmil
PanDDA analysis group deposition of ground-state model of MAP1LC3B
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Kumar, A, Marples, P.G, Tomlinson, C.W.E, Fearon, D, von-Delft, F, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-08-11
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:PanDDA analysis group deposition of ground-state model
To Be Published
6K6M
DownloadVisualize
BU of 6k6m by Molmil
Crystal structure of HIV-2 Nef protein
Descriptor: Protein Nef
Authors:Hirao, K, Andrews, S, Kuroki, K, Kusaka, H, Tadokoro, T, Kita, S, Ose, T, Rowland-Jones, S, Maenaka, K.
Deposit date:2019-06-04
Release date:2020-03-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.072 Å)
Cite:Structure of HIV-2 Nef Reveals Features Distinct from HIV-1 Involved in Immune Regulation.
Iscience, 23, 2020
3RIZ
DownloadVisualize
BU of 3riz by Molmil
Crystal structure of the plant steroid receptor BRI1 ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Protein BRASSINOSTEROID INSENSITIVE 1, ...
Authors:Hothorn, M.
Deposit date:2011-04-14
Release date:2011-06-22
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.523 Å)
Cite:Structural basis of steroid hormone perception by the receptor kinase BRI1.
Nature, 474, 2011
1C44
DownloadVisualize
BU of 1c44 by Molmil
STEROL CARRIER PROTEIN 2 (SCP2) FROM RABBIT
Descriptor: PROTEIN (STEROL CARRIER PROTEIN 2)
Authors:Choinowski, T, Hauser, H, Piontek, K.
Deposit date:1999-07-02
Release date:2000-08-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of sterol carrier protein 2 at 1.8 A resolution reveals a hydrophobic tunnel suitable for lipid binding.
Biochemistry, 39, 2000
5TXY
DownloadVisualize
BU of 5txy by Molmil
Identification of a New Zinc Binding Chemotype of by Fragment Screening on human carbonic anhydrase
Descriptor: (5R)-5-phenyl-1,3-oxazolidine-2,4-dione, Carbonic anhydrase 2, FORMIC ACID, ...
Authors:Ren, B, Peat, T.S, Poulsen, S.-A.
Deposit date:2016-11-17
Release date:2017-08-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.206 Å)
Cite:Identification of a New Zinc Binding Chemotype by Fragment Screening.
J. Med. Chem., 60, 2017
4HYT
DownloadVisualize
BU of 4hyt by Molmil
Na,K-ATPase in the E2P state with bound ouabain and Mg2+ in the cation-binding site
Descriptor: 1-O-decanoyl-beta-D-tagatofuranosyl beta-D-allopyranoside, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Laursen, M, Yatime, L, Nissen, P, Fedosova, N.U.
Deposit date:2012-11-14
Release date:2013-06-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.404 Å)
Cite:Crystal structure of the high-affinity Na+,K+-ATPase-ouabain complex with Mg2+ bound in the cation binding site.
Proc.Natl.Acad.Sci.USA, 110, 2013
5TYA
DownloadVisualize
BU of 5tya by Molmil
Identification of a New Zinc Binding Chemotype by Fragment Screening
Descriptor: (5R)-5-phenyl-1,3-thiazolidine-2,4-dione, Carbonic anhydrase 2, ZINC ION
Authors:Peat, T.S, Poulsen, S.A, Ren, B, Dolezal, O, Woods, L.A, Mujumdar, P, Chrysanthopoulos, P.K.
Deposit date:2016-11-18
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Identification of a New Zinc Binding Chemotype by Fragment Screening.
J. Med. Chem., 60, 2017
7L61
DownloadVisualize
BU of 7l61 by Molmil
C-type carbohydrate-recognition domain 4 of the mannose receptor complexed with L-fucose-(alpha 1-2)-D-galactose-(beta1-4)-D-glucose
Descriptor: CALCIUM ION, Macrophage mannose receptor 1, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Weis, W.I, Feinberg, H.
Deposit date:2020-12-23
Release date:2021-02-03
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural analysis of carbohydrate binding by the macrophage mannose receptor CD206.
J.Biol.Chem., 296, 2021

245011

PDB entries from 2025-11-19

PDB statisticsPDBj update infoContact PDBjnumon