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8Q63	Cryo-EM structure of IC8', a second state of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2023-08-10 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.68 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
4ZN3	Crystal Structure of MjSpt4:Spt5 complex conformation B Descriptor: FE (III) ION, GLYCEROL, Transcription elongation factor Spt4, ... Authors: Guo, G.R, Zhou, H.H, Gao, Y.X, Zhu, Z.L, Niu, L.W, Teng, M.K. Deposit date: 2015-05-04 Release date: 2016-03-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural and biochemical insights into the DNA-binding mode of MjSpt4p:Spt5 complex at the exit tunnel of RNAPII J.Struct.Biol., 192, 2015
8AP1	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with two GTP molecules poised for de novo initiation (IC2) Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2022-08-09 Release date: 2023-08-23 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.47 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
8ATV	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 5-mer RNA, pppGpGpApApA (IC5) Descriptor: DNA (36-MER), DNA-directed RNA polymerase, mitochondrial, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2022-08-24 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.39 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
8ATW	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 6-mer RNA, pppGpGpApApApU (IC6) Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2022-08-24 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
8ATT	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 4-mer RNA, pppGpGpUpA (IC4) Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2022-08-24 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.44 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
7Y9Y	Structure of the Cas7-11-Csx29-guide RNA-target RNA (no PFS) complex Descriptor: CHAT domain-containing protein, CRISPR-associated RAMP family protein, RNA (27-MER), ... Authors: Kato, K, Okazaki, S, Ishikawa, J, Isayama, Y, Nishizawa, T, Nishimasu, H. Deposit date: 2022-06-26 Release date: 2022-11-09 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.77 Å) Cite: RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease. Science, 378, 2022
7Y9X	Structure of the Cas7-11-Csx29-guide RNA complex Descriptor: CHAT domain-containing protein, CRISPR-associated RAMP family protein, ZINC ION, ... Authors: Kato, K, Okazaki, S, Ishikawa, J, Isayama, Y, Nishizawa, T, Nishimasu, H. Deposit date: 2022-06-26 Release date: 2022-11-09 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.49 Å) Cite: RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease. Science, 378, 2022
1AJF	SOLUTION STRUCTURE OF THE P5B STEM LOOP FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNA (5'-R(*GP*AP*CP*AP*GP*GP*GP*GP*AP*AP*AP*CP*UP*UP*UP*GP*UP*C)-3') Authors: Kieft, J.S, Tinoco Junior, I. Deposit date: 1997-05-02 Release date: 1997-07-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine. Structure, 5, 1997
5NOH	HRSV M2-1 core domain Descriptor: Transcription elongation factor M2-1 Authors: Josts, I, Almeida Hernandez, Y, Molina, I.G, de Prat-Gay, G, Tidow, H. Deposit date: 2017-04-12 Release date: 2018-01-03 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure and stability of the Human respiratory syncytial virus M2-1RNA-binding core domain reveals a compact and cooperative folding unit. Acta Crystallogr F Struct Biol Commun, 74, 2018
5NKX	HRSV M2-1 core domain, P3221 crystal form Descriptor: M2-1 Authors: Almeida Hernandez, Y, Josts, I, Molina, I.G, de Pray-Gay, G, Tidow, H. Deposit date: 2017-04-03 Release date: 2018-01-03 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.00008678 Å) Cite: Structure and stability of the Human respiratory syncytial virus M2-1RNA-binding core domain reveals a compact and cooperative folding unit. Acta Crystallogr F Struct Biol Commun, 74, 2018
1XSU	Solution structure of E.coli RNase P RNA P4 stem, U69C/C70U mutation, complexed with cobalt (III) hexammine. Descriptor: COBALT HEXAMMINE(III), RNA (27-MER) Authors: Schmitz, M. Deposit date: 2004-10-20 Release date: 2004-12-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy Nucleic Acids Res., 32, 2004
1XST	Solution structure of E.coli RNase P RNA P4 stem, U69A mutation, complexed with cobalt (III) hexammine. Descriptor: COBALT HEXAMMINE(III), RNA (27-MER) Authors: Schmitz, M. Deposit date: 2004-10-20 Release date: 2004-12-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy Nucleic Acids Res., 32, 2004
2VOO	Crystal structure of N-terminal domains of Human La protein complexed with RNA oligomer UUUUUUUU Descriptor: 5'-R(*UP*UP*UP*UP*UP*UP*UP)-3', LUPUS LA PROTEIN Authors: Kotik-Kogan, O, Valentine, E.R, Sanfelice, D, Conte, M.R, Curry, S. Deposit date: 2008-02-19 Release date: 2008-05-06 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3' Ends by the Human La Protein. Structure, 16, 2008
5HCI	GPN-loop GTPase Npa3 in complex with GDP Descriptor: GLYCEROL, GPN-loop GTPase 1, GUANOSINE-5'-DIPHOSPHATE, ... Authors: Niesser, J, Wagner, F.R, Kostrewa, D, Muehlbacher, W, Cramer, P. Deposit date: 2016-01-04 Release date: 2016-01-20 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of GPN-Loop GTPase Npa3 and Implications for RNA Polymerase II Assembly. Mol.Cell.Biol., 36, 2015
5HCN	GPN-loop GTPase Npa3 in complex with GMPPCP Descriptor: GLYCEROL, GPN-loop GTPase 1, LAURIC ACID, ... Authors: Niesser, J, Wagner, F.R, Kostrewa, D, Muehlbacher, W, Cramer, P. Deposit date: 2016-01-04 Release date: 2016-01-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of GPN-Loop GTPase Npa3 and Implications for RNA Polymerase II Assembly. Mol.Cell.Biol., 36, 2015
4PUF	Complex between the Salmonella T3SS effector SlrP and its human target thioredoxin-1 Descriptor: E3 ubiquitin-protein ligase SlrP, Thioredoxin Authors: Zouhir, S, Bernal-Bayard, J, Cordero-Alba, M, Cardenal-Munoz, E, Guimaraes, B, Lazar, N, Ramos-Morales, F, Nessler, S. Deposit date: 2014-03-13 Release date: 2014-09-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.296 Å) Cite: The structure of the Slrp-Trx1 complex sheds light on the autoinhibition mechanism of the type III secretion system effectors of the NEL family. Biochem.J., 464, 2014
1NGM	Crystal structure of a yeast Brf1-TBP-DNA ternary complex Descriptor: 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3', Transcription factor IIIB BRF1 subunit, ... Authors: Juo, Z.S, Kassavetis, G.A, Wang, J, Geiduschek, E.P, Sigler, P.B. Deposit date: 2002-12-17 Release date: 2003-03-25 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Crystal structure of a transcription factor IIIB core interface ternary complex Nature, 422, 2003
8TDZ	16mer self-complementary duplex RNA with D:U pair sequence 2 Descriptor: COBALT HEXAMMINE(III), RNA Authors: Fang, Z, Jia, X, Szostak, J.W. Deposit date: 2023-07-05 Release date: 2024-06-12 Last modified: 2024-06-26 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Diaminopurine in Nonenzymatic RNA Template Copying. J.Am.Chem.Soc., 146, 2024
2VON	Crystal structure of N-terminal domains of Human La protein complexed with RNA oligomer AUAAUUU Descriptor: 5'-R(*AP*UP*AP*AP*UP*UP*UP)-3', LUPUS LA PROTEIN Authors: Kotik-Kogan, O, Valentine, E.R, Sanfelice, D, Conte, M.R, Curry, S. Deposit date: 2008-02-19 Release date: 2008-05-06 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3' Ends by the Human La Protein. Structure, 16, 2008
5UI6	Solution NMR Structure of Lasso Peptide Acinetodin Descriptor: Acinetodin Authors: Bushin, L.B, Metelev, M, Severinov, K, Seyedsayamdost, M.R. Deposit date: 2017-01-12 Release date: 2017-02-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Acinetodin and Klebsidin, RNA Polymerase Targeting Lasso Peptides Produced by Human Isolates of Acinetobacter gyllenbergii and Klebsiella pneumoniae. ACS Chem. Biol., 12, 2017
5UI7	Solution NMR Structure of Lasso Peptide Klebsidin Descriptor: Klebsidin Authors: Bushin, L.B, Metelev, M, Severinov, K, Seyedsayamdost, M.R. Deposit date: 2017-01-13 Release date: 2017-02-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Acinetodin and Klebsidin, RNA Polymerase Targeting Lasso Peptides Produced by Human Isolates of Acinetobacter gyllenbergii and Klebsiella pneumoniae. ACS Chem. Biol., 12, 2017
1TF6	CO-CRYSTAL STRUCTURE OF XENOPUS TFIIIA ZINC FINGER DOMAIN BOUND TO THE 5S RIBOSOMAL RNA GENE INTERNAL CONTROL REGION Descriptor: DNA (5'-D(*AP*CP*GP*GP*GP*CP*CP*TP*GP*GP*TP*TP*AP*GP*TP*AP*C P*CP*TP*GP*GP*AP* TP*GP*GP*GP*AP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*TP*CP*CP*CP*AP*TP*CP*CP*AP*GP*GP*T P*AP*CP*TP*AP*AP* CP*CP*AP*GP*GP*CP*CP*CP*G)-3'), PROTEIN (TRANSCRIPTION FACTOR IIIA), ... Authors: Nolte, R.T, Conlin, R.M, Harrison, S.C, Brown, R.S. Deposit date: 1998-03-02 Release date: 1998-07-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex. Proc.Natl.Acad.Sci.USA, 95, 1998
6IVU	Solution structure of the Sigma-anti-sigma factor complex RsgI1N-SigI1C from Clostridium thermocellum Descriptor: Anti-sigma-I factor RsgI1, RNA polymerase sigma factor SigI1 Authors: Wei, Z, Feng, Y. Deposit date: 2018-12-04 Release date: 2019-05-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Alternative sigma I/anti-sigma I factors represent a unique form of bacterial sigma /anti-sigma complex. Nucleic Acids Res., 47, 2019
8B3G	C(N)RL4CSA-UVSSA-E2-ubiquitin complex. Descriptor: Cullin-4A, DNA damage-binding protein 1, DNA excision repair protein ERCC-8, ... Authors: Kokic, G, Cramer, P. Deposit date: 2022-09-16 Release date: 2024-09-04 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair. Nat.Struct.Mol.Biol., 31, 2024

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