PDB: 659 resultsInfo pagesStatus searchChemie searchBIRD

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1UM7	Solution structure of the third PDZ domain of synapse-associated protein 102 Descriptor: synapse-associated protein 102 Authors: Qin, X.-R, Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-09-24 Release date: 2004-03-24 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution structure of the third PDZ domain of synapse-associated protein 102 To be published
1VA8	Solution structure of the PDZ domain of Pals1 protein Descriptor: MAGUK p55 subfamily member 5 Authors: Qin, X.-R, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-02-13 Release date: 2005-02-22 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Solution structure of the PDZ domain of Pals1 protein To be Published
1T2M	Solution Structure Of The Pdz Domain Of AF-6 Descriptor: AF-6 protein Authors: Zhou, H, Wu, J.H, Xu, Y.Q, Huang, A.D, Shi, Y.Y. Deposit date: 2004-04-22 Release date: 2005-02-08 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution Structure of AF-6 PDZ Domain and Its Interaction with the C-terminal Peptides from Neurexin and Bcr J.Biol.Chem., 280, 2005
1X6D	Solution structures of the PDZ domain of human Interleukin-16 Descriptor: Interleukin-16 Authors: Sato, M, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-05-17 Release date: 2005-11-17 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structures of the PDZ domain of human Interleukin-16 To be Published
2HGA	Solution NMR Structure of Conserved protein MTH1368, Northeast Structural Genomics Consortium Target TT821A Descriptor: Conserved protein MTH1368 Authors: Liu, G, Lin, Y, Parish, D, Shen, Y, Sukumaran, D, Yee, A, Semesi, A, Arrowsmith, C, Szyperski, T, Northeast Structural Genomics Consortium (NESG) Deposit date: 2006-06-26 Release date: 2006-07-25 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution NMR Structure of Conserved protein MTH1368, Northeast Structural Genomics Consortium Target TT821A TO BE PUBLISHED
6IQR	Crystal structure of Prc with S452I and L252Y mutations Descriptor: Tail-specific protease Authors: Chueh, C.K, Chang, C.I. Deposit date: 2018-11-08 Release date: 2019-07-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.42 Å) Cite: Structural Basis for the Differential Regulatory Roles of the PDZ Domain in C-Terminal Processing Proteases. Mbio, 10, 2019
6IQS	Crystal structure of Prc with L245A and L340G mutations in complex with NlpI Descriptor: Lipoprotein NlpI, Tail-specific protease Authors: Chuech, C.K, Chang, C.I. Deposit date: 2018-11-08 Release date: 2019-07-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Structural Basis for the Differential Regulatory Roles of the PDZ Domain in C-Terminal Processing Proteases. Mbio, 10, 2019
6JJL	Crystal structure of the DegP dodecamer with a modulator Descriptor: CYS-TYR-ARG-LYS-LEU, Periplasmic serine endoprotease DegP Authors: Cho, H, Choi, Y, Lee, H.H, Kim, S. Deposit date: 2019-02-26 Release date: 2020-09-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (4.2 Å) Cite: Over-activation of a nonessential bacterial protease DegP as an antibiotic strategy. Commun Biol, 3, 2020
4QL6	Structure of C. trachomatis CT441 Descriptor: Carboxy-terminal processing protease Authors: Kohlmann, F, Hilgenfeld, R, Hansen, G. Deposit date: 2014-06-10 Release date: 2014-11-05 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.97 Å) Cite: Structural basis of the proteolytic and chaperone activity of Chlamydia trachomatis CT441 J.Bacteriol., 197, 2015
7M4R	Structural basis for SARS-CoV-2 envelope protein in recognition of human cell junction protein PALS1 Descriptor: Envelope small membrane protein, MAGUK p55 subfamily member 5 Authors: Liu, Q, Chai, J. Deposit date: 2021-03-22 Release date: 2021-03-31 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.65 Å) Cite: Structural basis for SARS-CoV-2 envelope protein recognition of human cell junction protein PALS1. Nat Commun, 12, 2021
6IQQ	Crystal structure of Prc with S452I and L252Y mutations in complex with NlpI Descriptor: CALCIUM ION, Lipoprotein NlpI, Tail-specific protease Authors: Chueh, C.K, Chang, C.I. Deposit date: 2018-11-08 Release date: 2019-07-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural Basis for the Differential Regulatory Roles of the PDZ Domain in C-Terminal Processing Proteases. Mbio, 10, 2019
6IRD	Complex structure of INADL PDZ89 and PLCb4 C-terminal CC-PBM Descriptor: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase, GOLD ION, InaD-like protein Authors: Ye, F, Li, J, Huang, Y, Liu, W, Zhang, M. Deposit date: 2018-11-12 Release date: 2019-01-23 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.813 Å) Cite: An unexpected INAD PDZ tandem-mediated plc beta binding in Drosophila photo receptors. Elife, 7, 2018
6IRE	Complex structure of INAD PDZ45 and NORPA CC-PBM Descriptor: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase, Inactivation-no-after-potential D protein Authors: Ye, F, Li, J, Deng, X, Liu, W, Zhang, M. Deposit date: 2018-11-12 Release date: 2019-01-23 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (3.25 Å) Cite: An unexpected INAD PDZ tandem-mediated plc beta binding in Drosophila photo receptors. Elife, 7, 2018
4WSI	Crystal Structure of PALS1/Crb complex Descriptor: MAGUK p55 subfamily member 5, Protein crumbs Authors: Wei, Z, Li, Y, Zhang, M. Deposit date: 2014-10-28 Release date: 2014-11-26 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structure of Crumbs tail in complex with the PALS1 PDZ-SH3-GK tandem reveals a highly specific assembly mechanism for the apical Crumbs complex. Proc.Natl.Acad.Sci.USA, 111, 2014
4A8C	Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with a binding peptide Descriptor: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ Authors: Malet, H, Canellas, F, Sawa, J, Yan, J, Thalassinos, K, Ehrmann, M, Clausen, T, Saibil, H.R. Deposit date: 2011-11-20 Release date: 2012-01-11 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (7.5 Å) Cite: Newly Folded Substrates Inside the Molecular Cage of the Htra Chaperone Degq Nat.Struct.Mol.Biol., 19, 2012
4A9G	Symmetrized cryo-EM reconstruction of E. coli DegQ 24-mer in complex with beta-casein Descriptor: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ Authors: Malet, H, Canellas, F, Sawa, J, Yan, J, Thalassinos, K, Ehrmann, M, Clausen, T, Saibil, H.R. Deposit date: 2011-11-26 Release date: 2012-01-11 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (7.5 Å) Cite: Newly Folded Substrates Inside the Molecular Cage of the Htra Chaperone Degq Nat.Struct.Mol.Biol., 19, 2012
7W6X	Crystal structure of E. coli RseP in complex with batimastat Descriptor: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Regulator of sigma-E protease RseP, ZINC ION Authors: Takanuki, K, Imaizumi, Y, Nogi, T. Deposit date: 2021-12-02 Release date: 2022-09-07 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
5WQL	Structure of a PDZ-protease bound to a substrate-binding adaptor Descriptor: ALA-ALA-ALA-ALA, ALA-ALA-ALA-ALA-ALA-ALA, LEU-SER-ARG-SER, ... Authors: Su, M.Y, Chang, C.I. Deposit date: 2016-11-27 Release date: 2017-11-22 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis of adaptor-mediated protein degradation by the tail-specific PDZ-protease Prc Nat Commun, 8, 2017
5V6T	The Plexin D1 intracellular region in complex with GIPC1 Descriptor: PDZ domain-containing protein GIPC1, Plexin-D1, SULFATE ION Authors: Shang, G, Zhang, X. Deposit date: 2017-03-17 Release date: 2017-05-31 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.189 Å) Cite: Structure analyses reveal a regulated oligomerization mechanism of the PlexinD1/GIPC/myosin VI complex. Elife, 6, 2017
7YKF	Crystal structure of MAGI2 PDZ0-GK/pEphexin4 complex Descriptor: Ephexin4, Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2 Authors: Zhang, M, Lin, L, Zhu, J. Deposit date: 2022-07-22 Release date: 2023-08-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Phosphorylation-dependent recognition of diverse protein targets by the cryptic GK domain of MAGI MAGUKs. Sci Adv, 9, 2023
7YKI	Crystal structure of MAGI2 PDZ0-GK domain in complex with phospho-SAPAP1 GBR3 peptide Descriptor: GLYCEROL, Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2, ... Authors: Zhang, M, Lin, L, Zhu, J. Deposit date: 2022-07-22 Release date: 2023-08-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Phosphorylation-dependent recognition of diverse protein targets by the cryptic GK domain of MAGI MAGUKs. Sci Adv, 9, 2023
7YKG	Crystal structure of MAGI2 PDZ0-GK/pSGEF complex Descriptor: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2, SGEF Authors: Zhang, M, Lin, L, Zhu, J. Deposit date: 2022-07-22 Release date: 2023-08-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Phosphorylation-dependent recognition of diverse protein targets by the cryptic GK domain of MAGI MAGUKs. Sci Adv, 9, 2023
7YKH	Crystal structure of MAGI2 PDZ0-GK domain in complex with phospho-SAPAP1 GBR2 peptide Descriptor: GLYCEROL, Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2, ... Authors: Zhang, M, Lin, L, Zhu, J. Deposit date: 2022-07-22 Release date: 2023-08-16 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Phosphorylation-dependent recognition of diverse protein targets by the cryptic GK domain of MAGI MAGUKs. Sci Adv, 9, 2023
6JJK	Crystal structure of the DegP dodecamer with a modulator Descriptor: CYS-TYR-TYR-LYS-ILE, Periplasmic serine endoprotease DegP Authors: Cho, H, Choi, Y, Lee, H.H, Kim, S. Deposit date: 2019-02-26 Release date: 2020-09-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Over-activation of a nonessential bacterial protease DegP as an antibiotic strategy Commun Biol, 3, 2020
3TSZ	crystal structure of PDZ3-SH3-GUK core module from human ZO-1 in complex with 12mer peptide from human JAM-A cytoplasmic tail Descriptor: Junctional adhesion molecule A, Tight junction protein ZO-1 Authors: Nomme, J, Lavie, A. Deposit date: 2011-09-13 Release date: 2011-10-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.502 Å) Cite: The Src Homology 3 Domain Is Required for Junctional Adhesion Molecule Binding to the Third PDZ Domain of the Scaffolding Protein ZO-1. J.Biol.Chem., 286, 2011

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