PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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3B5F	Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active Site Descriptor: 29-mer Loop A and Loop B Ribozyme strand, COBALT HEXAMMINE(III), Loop A Substrate strand, ... Authors: MacElrevey, C, Krucinska, J, Wedekind, J.E. Deposit date: 2007-10-25 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. Rna, 14, 2008
6HAU	KSHV PAN RNA Mta-response element fragment complexed with the globular domain of herpesvirus saimiri ORF57 Descriptor: ACETATE ION, MRE fragment of PAN RNA, ZINC ION, ... Authors: Tunnicliffe, R.B, Levy, C, Ruiz Nivia, H.D, Sandri-Goldin, R.M, Golovanov, A.P. Deposit date: 2018-08-08 Release date: 2018-11-21 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Structural identification of conserved RNA binding sites in herpesvirus ORF57 homologs: implications for PAN RNA recognition. Nucleic Acids Res., 47, 2019
4PCO	Crystal structure of double-stranded RNA with four terminal GU wobble base pairs Descriptor: CHLORIDE ION, COBALT HEXAMMINE(III), RNA (5'-D(*GP*GP*UP*GP*GP*CP*UP*GP*UP*U)-3') Authors: Mooers, B.H.M. Deposit date: 2014-04-15 Release date: 2015-10-14 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.32 Å) Cite: Structures and Energetics of Four Adjacent GU Pairs That Stabilize an RNA Helix. J.Phys.Chem.B, 119, 2015
6G7Z	Lariat-capping ribozyme with a shortened DP2 stem loop Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Lariat-capping ribozyme, MAGNESIUM ION Authors: Masquida, B, Meyer, M, Olieric, V. Deposit date: 2018-04-06 Release date: 2018-12-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.33595 Å) Cite: Conformational adaptation of UNCG loops upon crowding. Rna, 25, 2019
3B91	Minimally Hinged Hairpin Ribozyme Incorporates Ade38(2AP) and 2',5'-Phosphodiester Linkage Mutations at the Active Site Descriptor: 29-mer Loop A and Loop B Ribozyme strand, COBALT HEXAMMINE(III), Loop A Substrate strand, ... Authors: MacElrevey, C, Krucinska, J, Wedekind, J.E. Deposit date: 2007-11-02 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. Rna, 14, 2008
3B5S	Minimally Hinged Hairpin Ribozyme Incorporates A38DAP Mutation and 2'-O-methyl Modification at the Active Site Descriptor: 29-mer Loop A and Loop B Ribozyme strand, COBALT HEXAMMINE(III), Loop A Substrate strand, ... Authors: MacElrevey, C, Krucinska, J, Wedekind, J.E. Deposit date: 2007-10-26 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. Rna, 14, 2008
2PJP	Structure of the mRNA-binding domain of elongation factor SelB from E.coli in complex with SECIS RNA Descriptor: CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ... Authors: Soler, N, Fourmy, D, Yoshizawa, S. Deposit date: 2007-04-16 Release date: 2007-10-30 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB. J.Mol.Biol., 370, 2007
3KW2	Crystal structure of probable rRNA-methyltransferase from Porphyromonas gingivalis Descriptor: ADENOSINE, Probable r-RNA methyltransferase Authors: Ramagopal, U.A, Toro, R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2009-11-30 Release date: 2010-01-19 Last modified: 2021-02-10 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of probable rRNA-methyltransferase from Porphyromonas gingivalis To be Published
2ZPA	Crystal Structure of tRNA(Met) Cytidine Acetyltransferase Descriptor: ACETYL COENZYME *A, ADENOSINE-5'-DIPHOSPHATE, SULFATE ION, ... Authors: Chimnaronk, S, Manita, T, Yao, M, Tanaka, I. Deposit date: 2008-07-08 Release date: 2009-04-07 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon Embo J., 28, 2009
1QMI	Crystal structure of RNA 3'-terminal phosphate cyclase, an ubiquitous enzyme with unusual topology Descriptor: RNA 3'-TERMINAL PHOSPHATE CYCLASE Authors: Palm, G.J, Billy, E, Filipowicz, W, Wlodawer, A. Deposit date: 1999-09-28 Release date: 2000-01-11 Last modified: 2013-04-17 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal Structure of RNA 3'-Terminal Phosphate Cyclase, a Ubiquitous Enzyme with Unusual Topology Structure, 8, 2000
4IQS	RNA 8mer duplex modified with 4-Se-Uridine Descriptor: RNA (5'-R(*GP*UP*GP*(S5)P*AP*CP*AP*C)-3') Authors: Sheng, J, Gan, J, Soares, A, Huang, Z. Deposit date: 2013-01-13 Release date: 2013-12-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural insights of non-canonical U*U pair and Hoogsteen interaction probed with Se atom. Nucleic Acids Res., 41, 2013
3CDW	Crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase (3Dpol) in complex with protein primer VPg and a pyrophosphate Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ... Authors: Gruez, A, Selisko, B, Roberts, M, Bricogne, G, Bussetta, C, Canard, B. Deposit date: 2008-02-27 Release date: 2008-07-22 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase in complex with its protein primer VPg confirms the existence of a second VPg binding site on Picornaviridae polymerases J.Virol., 82, 2008
2R7W	Crystal Structure of Rotavirus SA11 VP1/RNA (UGUGACC)/mRNA 5'-CAP (m7GpppG) complex Descriptor: GUANOSINE-5'-TRIPHOSPHATE, RNA (5'-R(*UP*GP*UP*GP*AP*CP*C)-3'), RNA-dependent RNA polymerase Authors: Lu, X, Harrison, S.C, Tao, Y.J, Patton, J.T, Nibert, M.L. Deposit date: 2007-09-10 Release date: 2008-07-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1. Structure, 16, 2008
3VYY	Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9) Descriptor: ATP-dependent RNA helicase A, RNA (5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3') Authors: Yuan, Y.A, Fu, Q. Deposit date: 2012-10-05 Release date: 2013-02-13 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9). Nucleic Acids Res., 41, 2013
4LQ3	Crystal structure of human norovirus RNA-dependent RNA-polymerase bound to the inhibitor PPNDS Descriptor: 3-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]-7-nitronaphthalene-1,5-disulfonic acid, 5'-R(P*GP*G)-3', MAGNESIUM ION, ... Authors: Milani, M, Tarantino, D, Mastrangelo, E, Croci, R. Deposit date: 2013-07-17 Release date: 2014-02-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Naphthalene-sulfonate inhibitors of human norovirus RNA-dependent RNA-polymerase. Antiviral Res., 102, 2014
3VYX	Structural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase (DHX9) Descriptor: ATP-dependent RNA helicase A, RNA (5'-R(P*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3') Authors: Yuan, Y.A, Fu, Q. Deposit date: 2012-10-05 Release date: 2013-02-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9). Nucleic Acids Res., 41, 2013
3BBK	Miminally Junctioned Hairpin Ribozyme Incorporates A38C and 2'5'-phosphodiester Linkage within Active Site Descriptor: COBALT HEXAMMINE(III), Loop A Substrate strand, Loop A and Loop B Ribozyme strand, ... Authors: MacElrevey, C, Krucinska, J, Wedekind, J.E. Deposit date: 2007-11-09 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. Rna, 14, 2008
3BBI	Minimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active Site Descriptor: COBALT HEXAMMINE(III), Loop A Substrate strand, Loop A and Loop B Ribozyme strand, ... Authors: MacElrevey, C, Krucinska, J, Wedekind, J.E. Deposit date: 2007-11-09 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. Rna, 14, 2008
7DY6	A refined cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA Descriptor: DNA (63-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Lin, W. Deposit date: 2021-01-20 Release date: 2021-11-17 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.68 Å) Cite: A unique binding between SspA and RNAP beta' NTH across low-GC Gram-negative bacteria facilitates SspA-mediated transcription regulation. Biochem.Biophys.Res.Commun., 583, 2021
4E7A	Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin deletion bound to primer-template RNA with a 2',3'-ddC Descriptor: 5'-R(*CP*AP*UP*GP*GP*C)-D(P*(DOC))-3', RNA-directed RNA polymerase Authors: Edwards, T.E, Mosley, R.T. Deposit date: 2012-03-16 Release date: 2012-04-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of hepatitis C virus polymerase in complex with primer-template RNA. J.Virol., 86, 2012
2PLY	Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA. Descriptor: CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ... Authors: Soler, N, Fourmy, D, Yoshizawa, S. Deposit date: 2007-04-20 Release date: 2007-11-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB. J.Mol.Biol., 370, 2007
3KS8	Crystal structure of Reston ebolavirus VP35 RNA binding domain in complex with 18bp dsRNA Descriptor: 5'-R(*AP*GP*AP*AP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*A)-3', 5'-R(*UP*CP*CP*UP*CP*CP*CP*UP*CP*CP*CP*UP*CP*CP*UP*UP*CP*U)-3', Polymerase cofactor VP35 Authors: Kimberlin, C.R, Bornholdt, Z.A, Li, S, Woods, V.L, Macrae, I.J, Saphire, E.O. Deposit date: 2009-11-20 Release date: 2010-01-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.401 Å) Cite: Ebolavirus VP35 uses a bimodal strategy to bind dsRNA for innate immune suppression. Proc.Natl.Acad.Sci.USA, 107, 2009
2KUR	Solution Structure of K10 TLS RNA (AU mutant in upper helix) Descriptor: K10 TLS RNA Authors: Bullock, S.L, Ringel, I, Ish-Horowicz, D, Lukavsky, P.J. Deposit date: 2010-02-25 Release date: 2010-05-19 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A'-form RNA helices are required for cytoplasmic mRNA transport in Drosophila. Nat.Struct.Mol.Biol., 17, 2010
2KUV	Solution Structure of K10 TLS RNA (GC mutant in lower helix) Descriptor: K10 TLS RNA Authors: Bullock, S.L, Ringel, I, Ish-Horowicz, D, Lukavsky, P.J. Deposit date: 2010-03-01 Release date: 2010-05-19 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A'-form RNA helices are required for cytoplasmic mRNA transport in Drosophila. Nat.Struct.Mol.Biol., 17, 2010
3J9B	Electron cryo-microscopy of an RNA polymerase Descriptor: Polymerase, Polymerase basic protein 2, RNA (5'-R(*UP*UP*UP*UP*UP*A)-3'), ... Authors: Chang, S.H, Sun, D.P, Liang, H.H, Wang, J, Li, J, Guo, L, Wang, X.L, Guan, C.C, Boruah, B.M, Yuan, L.M, Feng, F, Yang, M.R, Wojdyla, J, Wang, J.W, Wang, M.T, Wang, H.W, Liu, Y.F. Deposit date: 2014-12-16 Release date: 2015-02-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Cryo-EM Structure of Influenza Virus RNA Polymerase Complex at 4.3 angstrom Resolution. Mol.Cell, 2015

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