Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8H4R
DownloadVisualize
BU of 8h4r by Molmil
The Crystal Structure of CDK3 and CyclinE1 Complex with Dinaciclib from Biortus
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium, G1/S-specific cyclin-E1, ...
Authors:Gui, W, Wang, F, Cheng, W, Gao, J, Huang, Y, Ouyang, Z.
Deposit date:2022-10-11
Release date:2023-10-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The Crystal Structure of CDK3 and CyclinE1 Complex with Dinaciclib from Biortus
To Be Published
8H4P
DownloadVisualize
BU of 8h4p by Molmil
class I sesquiterpene synthase
Descriptor: Longiborneol synthase CLM1, MAGNESIUM ION, N-benzyl-N,N-diethylethanaminium, ...
Authors:Li, A.N, Lou, T.T, Ma, M.
Deposit date:2022-10-11
Release date:2023-08-23
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structural Insights into Three Sesquiterpene Synthases for the Biosynthesis of Tricyclic Sesquiterpenes and Chemical Space Expansion by Structure-Based Mutagenesis.
J.Am.Chem.Soc., 2023
8H4O
DownloadVisualize
BU of 8h4o by Molmil
Crystal Structure of nucleotide-free Irgb6_T95D mutant
Descriptor: T-cell-specific guanine nucleotide triphosphate-binding protein 2
Authors:Saijo-Hamano, Y, Okuma, H, Sakai, N, Kato, T, Imasaki, T, Nitta, R.
Deposit date:2022-10-11
Release date:2023-10-18
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I.
Genes Cells, 29, 2024
8H4M
DownloadVisualize
BU of 8h4m by Molmil
Crystal Structure of GTP-bound Irgb6_T95D mutant
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, T-cell-specific guanine nucleotide triphosphate-binding protein 2
Authors:Saijo-Hamano, Y, Okuma, H, Sakai, N, Kato, T, Imasaki, T, Nitta, R.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I
To Be Published
8H4K
DownloadVisualize
BU of 8h4k by Molmil
GW9508-bound FFAR4 in complex with Gq
Descriptor: 3-(4-{[(3-phenoxyphenyl)methyl]amino}phenyl)propanoic acid, Free fatty acid receptor 4, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:He, Y, Yin, H.
Deposit date:2022-10-10
Release date:2023-06-21
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of omega-3 fatty acid receptor FFAR4 activation and G protein coupling selectivity.
Cell Res., 33, 2023
8H4D
DownloadVisualize
BU of 8h4d by Molmil
Blasnase-T13A/M57N
Descriptor: FORMIC ACID, GLYCEROL, L-asparaginase, ...
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published
8H47
DownloadVisualize
BU of 8h47 by Molmil
Blasnase-T13A/P55F
Descriptor: FORMIC ACID, GLYCEROL, L-asparaginase, ...
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published
8H46
DownloadVisualize
BU of 8h46 by Molmil
Blasnase-T13A/P55N with L-asn
Descriptor: ASPARAGINE, FORMIC ACID, GLYCEROL, ...
Authors:Lu, F, Wang, W, Chi, H, Ran, T.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme
To Be Published
8H3Y
DownloadVisualize
BU of 8h3y by Molmil
Bacteroide Fragilis Toxin in complex with nanobody 327
Descriptor: Fragilysin, Nanobody 327, ZINC ION
Authors:Wen, Y, Guo, Y.
Deposit date:2022-10-09
Release date:2023-02-08
Last modified:2023-03-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Screening and epitope characterization of diagnostic nanobody against total and activated Bacteroides fragilis toxin.
Front Immunol, 14, 2023
8H3X
DownloadVisualize
BU of 8h3x by Molmil
Bacteroide Fragilis Toxin in complex with nanobody 282
Descriptor: Fragilysin, ZINC ION, nanobody 282
Authors:Wen, Y, Guo, Y.
Deposit date:2022-10-09
Release date:2023-02-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Screening and epitope characterization of diagnostic nanobody against total and activated Bacteroides fragilis toxin.
Front Immunol, 14, 2023
8H3U
DownloadVisualize
BU of 8h3u by Molmil
Inhibitor-bound EP, polyA model
Descriptor: Enteropeptidase catalytic light chain, Enteropeptidase non-catalytic heavy chain
Authors:Ding, Z.Y, Huang, H.J.
Deposit date:2022-10-09
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Cryo-EM structures reveal the activation and substrate recognition mechanism of human enteropeptidase.
Nat Commun, 13, 2022
8H3T
DownloadVisualize
BU of 8h3t by Molmil
The crystal structure of AlpH
Descriptor: AlpH, GLYCEROL
Authors:Zhao, Y, Li, M, Jiang, M, Pan, L.F.
Deposit date:2022-10-09
Release date:2023-09-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.866 Å)
Cite:O-methyltransferase-like enzyme catalyzed diazo installation in polyketide biosynthesis.
Nat Commun, 14, 2023
8H3S
DownloadVisualize
BU of 8h3s by Molmil
Substrate-bound EP, polyA model
Descriptor: Enteropeptidase catalytic light chain, Enteropeptidase non-catalytic heavy chain, Serine protease 1
Authors:Ding, Z.Y, Huang, H.J.
Deposit date:2022-10-09
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (4.9 Å)
Cite:Cryo-EM structures reveal the activation and substrate recognition mechanism of human enteropeptidase.
Nat Commun, 13, 2022
8H3K
DownloadVisualize
BU of 8h3k by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) Double Mutant (L50F and E166V) in Complex with Inhibitor Enstrelvir
Descriptor: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM, 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione, ...
Authors:Wang, H, Lin, M, Duan, Y, Zhang, X, Zhou, H, Bian, Q, Liu, X, Rao, Z, Yang, H.
Deposit date:2022-10-08
Release date:2023-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular mechanisms of SARS-CoV-2 resistance to nirmatrelvir.
Nature, 622, 2023
8H3G
DownloadVisualize
BU of 8h3g by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) E166V Mutant in Complex with Inhibitor Enstrelvir
Descriptor: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione, GLYCEROL
Authors:Wang, H, Lin, M, Duan, Y, Zhang, X, Zhou, H, Bian, Q, Liu, X, Rao, Z, Yang, H.
Deposit date:2022-10-08
Release date:2023-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Molecular mechanisms of SARS-CoV-2 resistance to nirmatrelvir.
Nature, 622, 2023
8H3B
DownloadVisualize
BU of 8h3b by Molmil
Crystal structure of antibody scFv against M2e Influenza peptide
Descriptor: GLYCEROL, Single Chain Variable Fragment
Authors:Kumar, U, Madni, Z.K, Gaur, V, Salunke, D.M.
Deposit date:2022-10-08
Release date:2023-08-02
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A structure and knowledge-based combinatorial approach to engineering universal scFv antibodies against influenza M2 protein.
J.Biomed.Sci., 30, 2023
8H2X
DownloadVisualize
BU of 8h2x by Molmil
Structure of Acb2
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, p26
Authors:Feng, Y, Cao, X.L.
Deposit date:2022-10-07
Release date:2023-02-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Bacteriophages inhibit and evade cGAS-like immune function in bacteria.
Cell, 186, 2023
8H2W
DownloadVisualize
BU of 8h2w by Molmil
Cellodextrin phosphorylase from Clostridium thermocellum mutant - all cysteine residues were substituted with serines
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-10-07
Release date:2023-10-11
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:11 cysteine-to-serine mutations improve stability of cellodextrin phosphorylase from Clostridium thermocellum
To Be Published
8H2V
DownloadVisualize
BU of 8h2v by Molmil
Cellodextrin phosphorylase from Clostridium thermocellum mutant - all cysteine residues were substituted with serines
Descriptor: ACETATE ION, CHLORIDE ION, Cellodextrin phosphorylase, ...
Authors:Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-10-07
Release date:2023-10-11
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:11 cysteine-to-serine mutations improve stability of cellodextrin phosphorylase from Clostridium thermocellum
To Be Published
8H2U
DownloadVisualize
BU of 8h2u by Molmil
X-ray Structure of photosystem I-LHCI super complex from Chlamydomonas reinhardtii.
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Tanaka, H, Kubota-Kawai, H, Misumi, Y, Kurisu, G.
Deposit date:2022-10-07
Release date:2023-06-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Three structures of PSI-LHCI from Chlamydomonas reinhardtii suggest a resting state re-activated by ferredoxin.
Biochim Biophys Acta Bioenerg, 1864, 2023
8H2N
DownloadVisualize
BU of 8h2n by Molmil
gp96 RNA polymerase from P23-45 phage (crystal 2)
Descriptor: MAGNESIUM ION, Tape tail measure protein
Authors:Chaban, A, Sokolova, M.L, Tagami, S.
Deposit date:2022-10-06
Release date:2023-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (4.41 Å)
Cite:Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.
Nat Commun, 15, 2024
8H2M
DownloadVisualize
BU of 8h2m by Molmil
gp96 RNA polymerase from P23-45 phage (crystal 1)
Descriptor: Tape tail measure protein
Authors:Chaban, A, Sokolova, M.L, Tagami, S.
Deposit date:2022-10-06
Release date:2023-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.
Nat Commun, 15, 2024
8H2K
DownloadVisualize
BU of 8h2k by Molmil
Cellodextrin phosphorylase from Clostridium thermocellum mutant - all cysteine residues were substituted with serines
Descriptor: ACETATE ION, CHLORIDE ION, Cellodextrin phosphorylase, ...
Authors:Kuga, T, Sunagawa, N, Igarashi, K.
Deposit date:2022-10-06
Release date:2023-10-11
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:11 cysteine-to-serine mutations improve stability of cellodextrin phosphorylase from Clostridium thermocellum
To Be Published
8H28
DownloadVisualize
BU of 8h28 by Molmil
Crystal structure of the K87V mutant of cytochrome c' from Shewanella benthica DB6705
Descriptor: Class II cytochrome c, HEME C
Authors:Fujii, S, Sakaguchi, R, Oki, H, Kawahara, K, Ohkubo, T, Fujiyoshi, S, Sambongi, Y.
Deposit date:2022-10-05
Release date:2023-10-11
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Contribution of a surface salt bridge to the protein stability of deep-sea Shewanella benthica cytochrome c'.
J.Struct.Biol., 215, 2023
8H25
DownloadVisualize
BU of 8h25 by Molmil
Lacticaseibacillus casei GH35 beta-galactosidase LBCZ_0230
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Beta-galactosidase, DI(HYDROXYETHYL)ETHER, ...
Authors:Saburi, W, Ota, T, Kato, K, Tagami, T, Yamashita, K, Yao, M, Mori, H.
Deposit date:2022-10-04
Release date:2023-08-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.295 Å)
Cite:Function and Structure of Lacticaseibacillus casei GH35 beta-Galactosidase LBCZ_0230 with High Hydrolytic Activity to Lacto- N -biose I and Galacto- N -biose.
J Appl Glycosci (1999), 70, 2023

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon