Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YHH
DownloadVisualize
BU of 2yhh by Molmil
Microvirin:mannobiose complex
Descriptor: MANNAN-BINDING LECTIN, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
Authors:Hussan, S, Bewley, C.A, Clore, G.M, Gustchina, E, Ghirlando, R.
Deposit date:2011-05-02
Release date:2011-06-15
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:Solution Structure of the Monovalent Lectin Microvirin in Complex with Man(Alpha)(1-2)Man Provides a Basis for Anti-HIV Activity with Low Toxicity.
J.Biol.Chem., 286, 2011
1ZGC
DownloadVisualize
BU of 1zgc by Molmil
Crystal Structure of Torpedo Californica Acetylcholinesterase in Complex With an (RS)-Tacrine(10)-Hupyridone Inhibitor.
Descriptor: (5S)-5-{[10-(1,2,3,4-TETRAHYDROACRIDIN-9-YLAMINO)DECYL]AMINO}-5,6,7,8-TETRAHYDROQUINOLIN-2(1H)-ONE, 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase
Authors:Haviv, H, Wong, D.M, Greenblatt, H.M, Carlier, P.R, Pang, Y.P, Silman, I, Sussman, J.L, Israel Structural Proteomics Center (ISPC)
Deposit date:2005-04-21
Release date:2005-08-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Packing Mediates Enantioselective Ligand Recognition at the Peripheral Site of Acetylcholinesterase
J.Am.Chem.Soc., 127, 2005
3BVU
DownloadVisualize
BU of 3bvu by Molmil
GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl(alpha-D-mannopyranosyl)-(1->3)-S-[(alpha-D-mannopyranosyl)-(1->6)]-alpha-D-mannopyranoside
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-mannosidase 2, ...
Authors:Kuntz, D.A, Rose, D.R.
Deposit date:2008-01-07
Release date:2008-07-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Probing the substrate specificity of Golgi alpha-mannosidase II by use of synthetic oligosaccharides and a catalytic nucleophile mutant.
J.Am.Chem.Soc., 130, 2008
4B6P
DownloadVisualize
BU of 4b6p by Molmil
Structure of Mycobacterium tuberculosis Type II Dehydroquinase inhibited by (2S)-2-Perfluorobenzyl-3-dehydroquinic acid
Descriptor: (1R,2S,4S,5R)-2-(2,3,4,5,6-pentafluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid, 3-DEHYDROQUINATE DEHYDRATASE, SULFATE ION
Authors:Otero, J.M, Llamas-Saiz, A.L, Lence, E, Tizon, L, Peon, A, Prazeres, V.F.V, Lamb, H, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2012-08-14
Release date:2012-12-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanistic basis of the inhibition of type II dehydroquinase by (2S)- and (2R)-2-benzyl-3-dehydroquinic acids.
ACS Chem. Biol., 8, 2013
3H6U
DownloadVisualize
BU of 3h6u by Molmil
Crystal structure of the iGluR2 ligand-binding core (S1S2J-N754S) in complex with glutamate and NS1493 at 1.85 A resolution
Descriptor: (3S)-3-cyclopentyl-6-methyl-7-[(4-methylpiperazin-1-yl)sulfonyl]-3,4-dihydro-2H-1,2,4-benzothiadiazine 1,1-dioxide, CITRATE ANION, GLUTAMIC ACID, ...
Authors:Hald, H, Gajhede, M, Kastrup, J.S.
Deposit date:2009-04-24
Release date:2009-07-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Distinct structural features of cyclothiazide are responsible for effects on peak current amplitude and desensitization kinetics at iGluR2.
J.Mol.Biol., 391, 2009
4I7N
DownloadVisualize
BU of 4i7n by Molmil
T4 Lysozyme L99A/M102H with 1-phenyl-2-propyn-1-ol bound
Descriptor: (1R)-1-phenylprop-2-yn-1-ol, 2-HYDROXYETHYL DISULFIDE, ACETATE ION, ...
Authors:Merski, M, Shoichet, B.K.
Deposit date:2012-11-30
Release date:2013-03-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:The impact of introducing a histidine into an apolar cavity site on docking and ligand recognition.
J.Med.Chem., 56, 2013
3BVT
DownloadVisualize
BU of 3bvt by Molmil
GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl (alpha-D-mannopyranosyl)-(1->3)-S-alpha-D-mannopyranoside
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kuntz, D.A, Rose, D.R.
Deposit date:2008-01-07
Release date:2008-07-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Probing the substrate specificity of Golgi alpha-mannosidase II by use of synthetic oligosaccharides and a catalytic nucleophile mutant.
J.Am.Chem.Soc., 130, 2008
4FW6
DownloadVisualize
BU of 4fw6 by Molmil
Crystal Structure of the LpxC in complex with N-[(2S,3R)-3-HYDROXY-1-(HYDROXYAMINO)-1-OXOBUTAN-2-YL]-4-(PHENYLETHYNYL)BENZAMIDE inhibitor
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Kang, Y.N, Stuckey, J.A.
Deposit date:2012-06-29
Release date:2013-05-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal Structure of the LpxC
to be published
3NXG
DownloadVisualize
BU of 3nxg by Molmil
JC polyomavirus VP1
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Major capsid protein VP1
Authors:Neu, U, Stroeh, L.J, Stehle, T.
Deposit date:2010-07-13
Release date:2010-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure-function analysis of the human JC polyomavirus establishes the LSTc pentasaccharide as a functional receptor motif.
Cell Host Microbe, 8, 2010
4FAL
DownloadVisualize
BU of 4fal by Molmil
Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 5 in complex with 3-((3,4-dihydroisoquinolin-2(1H)-yl)sulfonyl)-N-methylbenzamide (80)
Descriptor: 1,2-ETHANEDIOL, 3-(3,4-dihydroisoquinolin-2(1H)-ylsulfonyl)-N-methylbenzamide, Aldo-keto reductase family 1 member C3, ...
Authors:Turnbull, A.P, Jamieson, S.M.F, Brooke, D.G, Heinrich, D, Atwell, G.J, Silva, S, Hamilton, E.J, Rigoreau, L.J.M, Trivier, E, Soudy, C, Samlal, S.S, Owen, P.J, Schroeder, E, Raynham, T, Flanagan, J.U, Denny, W.A.
Deposit date:2012-05-22
Release date:2012-10-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:3-(3,4-Dihydroisoquinolin-2(1H)-ylsulfonyl)benzoic acids; a New Class of Highly Potent and Selective Inhibitors of the Type 5 17-beta-hydroxysteroid Dehydrogenase AKR1C3
J.Med.Chem., 55, 2012
4RA5
DownloadVisualize
BU of 4ra5 by Molmil
Human Protein Kinase C THETA IN COMPLEX WITH LIGAND COMPOUND 11a (6-[(1,3-Dimethyl-azetidin-3-yl)-methyl-amino]-4(R)-methyl-7-phenyl-2,10-dihydro-9-oxa-1,2,4a-triaza-phenanthren-3-one)
Descriptor: (1R)-9-[(1,3-dimethylazetidin-3-yl)(methyl)amino]-1-methyl-8-phenyl-3,5-dihydro[1,2,4]triazino[3,4-c][1,4]benzoxazin-2(1H)-one, 1,2-ETHANEDIOL, HUMAN PROTEIN KINASE C THETA, ...
Authors:Argiriadi, M.A, George, D.M.
Deposit date:2014-09-09
Release date:2014-10-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Optimized Protein Kinase C theta (PKC theta ) Inhibitors Reveal Only Modest Anti-inflammatory Efficacy in a Rodent Model of Arthritis.
J.Med.Chem., 58, 2015
3HG2
DownloadVisualize
BU of 3hg2 by Molmil
Human alpha-galactosidase catalytic mechanism 1. Empty active site
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, Alpha-galactosidase A, ...
Authors:Guce, A.I, Clark, N.E, Garman, S.C.
Deposit date:2009-05-13
Release date:2009-11-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Catalytic mechanism of human alpha-galactosidase.
J.Biol.Chem., 285, 2010
2AKZ
DownloadVisualize
BU of 2akz by Molmil
Fluoride Inhibition of Enolase: Crystal Structure of the Inhibitory Complex
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FLUORIDE ION, Gamma enolase, ...
Authors:Qin, J, Chai, G, Brewer, J.M, Lovelace, L.L.
Deposit date:2005-08-04
Release date:2006-03-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Fluoride inhibition of enolase: crystal structure and thermodynamics
Biochemistry, 45, 2006
1TBZ
DownloadVisualize
BU of 1tbz by Molmil
HUMAN THROMBIN WITH ACTIVE SITE N-METHYL-D PHENYLALANYL-N-[5-(AMINOIMINOMETHYL)AMINO]-1-{{BENZOTHIAZOLYL)CARBONYL] BUTYL]-L-PROLINAMIDE TRIFLUROACETATE AND EXOSITE-HIRUGEN
Descriptor: ALPHA-THROMBIN, D-phenylalanyl-N-{(1S)-1-[(S)-1,3-benzothiazol-2-yl(hydroxy)methyl]-4-carbamimidamidobutyl}-L-prolinamide, HIRUGEN, ...
Authors:Matthews, J.H, Krishnan, R, Costanzo, M.J, Maryanoff, B.E, Tulinsky, A.
Deposit date:1998-02-05
Release date:1998-05-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of thrombin with thiazole-containing inhibitors: probes of the S1' binding site.
Biophys.J., 71, 1996
2NSL
DownloadVisualize
BU of 2nsl by Molmil
E. coli PurE H45N mutant complexed with CAIR
Descriptor: 5-AMINO-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H-IMIDAZOLE-4-CARBOXYLIC ACID, Phosphoribosylaminoimidazole carboxylase catalytic subunit
Authors:Ealick, S.E, Morar, M.
Deposit date:2006-11-04
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:N(5)-CAIR Mutase: Role of a CO(2) Binding Site and Substrate Movement in Catalysis.
Biochemistry, 46, 2007
1UWT
DownloadVisualize
BU of 1uwt by Molmil
Structure of beta-glycosidase from Sulfolobus solfataricus in complex with D-galactohydroximo-1,5-lactam
Descriptor: (2E,3R,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)-2-PIPERIDINONE, ACETATE ION, BETA-GALACTOSIDASE
Authors:Gloster, T.M, Roberts, S, Ducros, V.M.-A, Perugino, G, Rossi, M, Hoos, R, Moracci, M, Vasella, A, Davies, G.J.
Deposit date:2004-02-11
Release date:2004-05-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural studies of the beta-glycosidase from Sulfolobus solfataricus in complex with covalently and noncovalently bound inhibitors.
Biochemistry, 43, 2004
2H9J
DownloadVisualize
BU of 2h9j by Molmil
Structure of Hen egg white lysozyme soaked with Ni2-Xylylbicyclam
Descriptor: 1,1'-[1,4-PHENYLENEBIS(METHYLENE)]BIS[1,4,8,11-TETRAAZACYCLOTETRADECANE]NI(II), CHLORIDE ION, Lysozyme C, ...
Authors:McNae, I.W, Hunter, T.M, Sadler, P.J, Walkinshaw, M.D.
Deposit date:2006-06-10
Release date:2007-04-10
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Configurations of nickel-cyclam antiviral complexes and protein recognition.
Chemistry, 13, 2007
3QLZ
DownloadVisualize
BU of 3qlz by Molmil
Candida glabrata dihydrofolate reductase complexed with NADPH and 5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-propylpyrimidine-2,4-diamine (UCP130B)
Descriptor: 5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-propylpyrimidine-2,4-diamine, MAGNESIUM ION, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Paulsen, J.L, Bendel, S.D, Anderson, A.C.
Deposit date:2011-02-03
Release date:2011-07-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal Structures of Candida albicans Dihydrofolate Reductase Bound to Propargyl-Linked Antifolates Reveal the Flexibility of Active Site Loop Residues Critical for Ligand Potency and Selectivity.
Chem.Biol.Drug Des., 78, 2011
2AKM
DownloadVisualize
BU of 2akm by Molmil
Fluoride Inhibition of Enolase: Crystal Structure of the Inhibitory Complex
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Gamma enolase, MAGNESIUM ION, ...
Authors:Qin, J, Chai, G, Brewer, J.M, Lovelace, L.L.
Deposit date:2005-08-03
Release date:2006-03-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Fluoride inhibition of enolase: crystal structure and thermodynamics
Biochemistry, 45, 2006
7K46
DownloadVisualize
BU of 7k46 by Molmil
Crystal Structure of a putative aspartate carbamoyltransferase Leishmania major Friedlin
Descriptor: 1,2-ETHANEDIOL, Aspartate carbamoyltransferase
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-09-14
Release date:2020-09-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of a putative aspartate carbamoyltransferase Leishmania major Friedlin
to be published
2ALD
DownloadVisualize
BU of 2ald by Molmil
HUMAN MUSCLE ALDOLASE
Descriptor: FRUCTOSE-BISPHOSPHATE ALDOLASE
Authors:Dalby, A.R, Littlechild, J.A.
Deposit date:1998-10-21
Release date:1999-04-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of human muscle aldolase complexed with fructose 1,6-bisphosphate: mechanistic implications.
Protein Sci., 8, 1999
2MPM
DownloadVisualize
BU of 2mpm by Molmil
Structural Basis of Receptor Sulfotyrosine Recognition by a CC Chemokine: the N-terminal Region of CCR3 Bound to CCL11/Eotaxin-1
Descriptor: CCR3, Eotaxin
Authors:Millard, C.J, Ludeman, J.P, Canals, M, Bridgford, J.L, Hinds, M.G, Clayton, D.J, Christopoulos, A, Payne, R.J, Stone, M.J.
Deposit date:2014-05-26
Release date:2014-12-10
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Structural Basis of Receptor Sulfotyrosine Recognition by a CC Chemokine: The N-Terminal Region of CCR3 Bound to CCL11/Eotaxin-1.
Structure, 22, 2014
1BBB
DownloadVisualize
BU of 1bbb by Molmil
A THIRD QUATERNARY STRUCTURE OF HUMAN HEMOGLOBIN A AT 1.7-ANGSTROMS RESOLUTION
Descriptor: CARBON MONOXIDE, HEMOGLOBIN A (CARBONMONOXY) (ALPHA CHAIN), HEMOGLOBIN A (CARBONMONOXY) (BETA CHAIN), ...
Authors:Arnone, A, Silva, M.M.
Deposit date:1992-04-29
Release date:1993-10-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A third quaternary structure of human hemoglobin A at 1.7-A resolution.
J.Biol.Chem., 267, 1992
6M5B
DownloadVisualize
BU of 6m5b by Molmil
X-ray crystal structure of cyclic-PIP and DNA complex in a reverse binding orientation
Descriptor: 1,2-ETHANEDIOL, 4-[[4-[(4-azanyl-1-methyl-pyrrol-2-yl)carbonylamino]-1-methyl-pyrrol-2-yl]carbonylamino]-~{N}-[2-[[(3~{S})-3-azanyl-4-oxidanylidene-butyl]carbamoyl]-1-methyl-imidazol-4-yl]-1-methyl-imidazole-2-carboxamide, DNA (5'-D(*CP*(CBR)P*AP*GP*GP*CP*CP*TP*GP*G)-3'), ...
Authors:Abe, K, Hirose, Y, Eki, H, Takeda, K, Bando, T, Endo, M, Sugiyama, H.
Deposit date:2020-03-10
Release date:2020-06-24
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:X-ray Crystal Structure of a Cyclic-PIP-DNA Complex in the Reverse-Binding Orientation.
J.Am.Chem.Soc., 142, 2020
5CEZ
DownloadVisualize
BU of 5cez by Molmil
Crystal Structure of the BG505 SOSIP gp140 HIV-1 Env trimer in Complex with an early putative precursor of the PGT121 family at 3.0 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35022 Fab Heavy Chain, ...
Authors:Wilson, I.A, Garces, F.
Deposit date:2015-07-08
Release date:2015-12-23
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (3.031 Å)
Cite:Affinity Maturation of a Potent Family of HIV Antibodies Is Primarily Focused on Accommodating or Avoiding Glycans.
Immunity, 43, 2015

243083

PDB entries from 2025-10-15

PDB statisticsPDBj update infoContact PDBjnumon