PDB: 2040 resultsInfo pagesStatus searchChemie searchBIRD

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7A8M	rsGreen0.7-K206A-N205G in the green-on state Descriptor: Green fluorescent protein Authors: De Zitter, E, Dedecker, P, Van Meervelt, L. Deposit date: 2020-08-30 Release date: 2021-02-17 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*. Angew.Chem.Int.Ed.Engl., 60, 2021
6KII	photolyase from Arthrospira platensis Descriptor: 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID, Deoxyribopyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Yan, H, Zhu, K. Deposit date: 2019-07-18 Release date: 2020-07-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A newly identified photolyase from Arthrospira platensis possesses a unique methenyltetrahydrofolate chromophore-binding pattern. Febs Lett., 594, 2020
8AAB	S148F mutant of blue-to-red fluorescent timer mRubyFT Descriptor: mRubyFT S148F mutant of blue-to-red fluorescent timer Authors: Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Dorovatovskii, P.V, Subach, O.M, Popov, V.O, Subach, F.V. Deposit date: 2022-06-30 Release date: 2022-08-17 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.6 Å) Cite: mRubyFT/S147I, a mutant of blue-to-red fluorescent timer Crystallography Reports, 2022
2HGD	Structure of S65A Y66F GFP variant with an oxidized chromophore Descriptor: Green fluorescent protein Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2006-06-26 Release date: 2007-03-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The Case of the Missing Ring: Radical Cleavage of a Carbon-Carbon Bond and Implications for GFP Chromophore Biosynthesis J.Am.Chem.Soc., 129, 2007
8YLZ	Structure of a cis-Geranylfarnesyl Diphosphate Synthase from Streptomyces clavuligerus Descriptor: Isoprenyl transferase Authors: Li, F.R, Wang, Q.L, Pan, X.M, Dong, L.B. Deposit date: 2024-03-07 Release date: 2024-05-08 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Discovery, Structure, and Engineering of a cis-Geranylfarnesyl Diphosphate Synthase. Angew.Chem.Int.Ed.Engl., 63, 2024
6S36	Crystal structure of E. coli Adenylate kinase R119K mutant Descriptor: Adenylate kinase, CHLORIDE ION, MAGNESIUM ION, ... Authors: Grundstrom, C, Rogne, P, Wolf-Watz, M, Sauer-Eriksson, A.E. Deposit date: 2019-06-24 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Nucleation of an Activating Conformational Change by a Cation-pi Interaction. Biochemistry, 58, 2019
6YLM	mCherry Descriptor: CHLORIDE ION, mCherry Authors: Myskova, J, Rybakova, M, Brynda, J, Lazar, J. Deposit date: 2020-04-07 Release date: 2020-12-16 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Directionality of light absorption and emission in representative fluorescent proteins. Proc.Natl.Acad.Sci.USA, 117, 2020
4DXI	Crystal Structure of an Ancestor of All Faviina Proteins Descriptor: GREEN FLUORESCENT PROTEIN, MAGNESIUM ION Authors: Kim, H, Wachter, R.M. Deposit date: 2012-02-27 Release date: 2013-02-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins. Structure, 23, 2015
5Y00	Acid-tolerant monomeric GFP, Gamillus, fluorescence (ON) state Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ... Authors: Nakashima, R, Sakurai, K, Shinoda, H, Matsuda, T, Nagai, T. Deposit date: 2017-07-14 Release date: 2018-01-17 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Acid-Tolerant Monomeric GFP from Olindias formosa. Cell Chem Biol, 25, 2018
5T3I	cyan fluorescence protein soaked with selenourea for 5 min Descriptor: Green fluorescent protein, PHOSPHATE ION, selenourea Authors: Luo, Z, Dauter, Z. Deposit date: 2016-08-25 Release date: 2016-11-30 Last modified: 2019-12-04 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures. Sci Rep, 6, 2016
1Q73	S65T Q80R Y145C T203C Green Fluorescent Protein (GFP) pH 8.5 Descriptor: Green Fluorescent Protein Authors: Jain, R.K, Ranganathan, R. Deposit date: 2003-08-15 Release date: 2004-02-03 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Local complexity of amino acid interactions in a protein core. Proc.Natl.Acad.Sci.USA, 101, 2004
3DQ2	Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 1: Structure 23 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
3DQ6	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 2: Structure 18 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
4KEX	Crystal structure analysis of a single amino acid deletion mutation in EGFP Descriptor: Green fluorescent protein Authors: Arpino, J.A.J, Rizkallah, P.J. Deposit date: 2013-04-26 Release date: 2014-08-06 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural and dynamic changes associated with beneficial engineered single-amino-acid deletion mutations in enhanced green fluorescent protein. Acta Crystallogr.,Sect.D, 70, 2014
6QSL	mTFP* closed conformation: I197C-Y200H-Y204H mutant for enhanced metal binding Descriptor: GFP-like fluorescent chromoprotein cFP484 Authors: Fischer, J, Renn, D, Arold, T.A, Groll, M. Deposit date: 2019-02-21 Release date: 2020-01-01 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A Robust and Versatile Host Protein for the Design and Evaluation of Artificial Metal Centers Acs Catalysis, 2019
6RUM	Crystal structure of GFP-LAMA-G97 - a GFP enhancer nanobody with cpDHFR insertion and TMP and NADPH Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GFP-LAMA-G97 a GFP enhancer nanobody with cpDHFR insertion, ... Authors: Farrants, H, Tarnawski, M, Mueller, T.G, Otsuka, S, Hiblot, J, Koch, B, Kueblbeck, M, Kraeusslich, H.-G, Ellenberg, J, Johnsson, K. Deposit date: 2019-05-28 Release date: 2020-02-12 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Chemogenetic Control of Nanobodies. Nat.Methods, 17, 2020
4LQU	1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant Descriptor: Green fluorescent protein Authors: Lovell, S, Xia, Y, Vo, B, Battaile, K.P, Egan, C, Karanicolas, J. Deposit date: 2013-07-19 Release date: 2013-12-18 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The designability of protein switches by chemical rescue of structure: mechanisms of inactivation and reactivation. J.Am.Chem.Soc., 135, 2013
7ODC	CRYSTAL STRUCTURE ORNITHINE DECARBOXYLASE FROM MOUSE, TRUNCATED 37 RESIDUES FROM THE C-TERMINUS, TO 1.6 ANGSTROM RESOLUTION Descriptor: PROTEIN (ORNITHINE DECARBOXYLASE), PYRIDOXAL-5'-PHOSPHATE Authors: Kern, A.D, Oliveira, M.A, Coffino, P, Hackert, M.L. Deposit date: 1999-03-03 Release date: 1999-10-22 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure of mammalian ornithine decarboxylase at 1.6 A resolution: stereochemical implications of PLP-dependent amino acid decarboxylases. Structure Fold.Des., 7, 1999
3AI4	Crystal structure of yeast enhanced green fluorescent protein - mouse polymerase iota ubiquitin binding motif fusion protein Descriptor: SULFATE ION, yeast enhanced green fluorescent protein,DNA polymerase iota Authors: Suzuki, N, Wakatsuki, S, Kawasaki, M. Deposit date: 2010-05-10 Release date: 2010-09-29 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystallization of small proteins assisted by green fluorescent protein Acta Crystallogr.,Sect.D, 66, 2010
7SAH	Crystal Structure of LaG16 Nanobody bound to eGFP Descriptor: Green fluorescent protein, LaG16 Authors: Cong, A.T.Q, Schellenberg, M.J. Deposit date: 2021-09-22 Release date: 2022-09-14 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.6 Å) Cite: High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices. Protein Sci., 31, 2022
1ZIN	ADENYLATE KINASE WITH BOUND AP5A Descriptor: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION Authors: Berry, M.B, Phillips Jr, G.N. Deposit date: 1996-06-07 Release date: 1997-06-16 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+. Proteins, 32, 1998
3WUP	Crystal Structure of the Ubiquitin-Binding Zinc Finger (UBZ) Domain of the Human DNA Polymerase Eta Descriptor: CHLORIDE ION, DNA polymerase eta, GLYCEROL, ... Authors: Suzuki, N, Wakatsuki, S, Kawasaki, S. Deposit date: 2014-05-01 Release date: 2015-06-17 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1. Febs J., 283, 2016
7Z7Q	Structure of the T207D single-point mutant of the fluorescent protein NeonCyan1 at pH 6.5 Descriptor: NeonCyan1 Authors: Duarte, K, Dupuy, J, Royant, A. Deposit date: 2022-03-16 Release date: 2022-05-04 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Cyan fluorescent proteins derived from mNeonGreen. Protein Eng.Des.Sel., 35, 2022
3GEX	1.6 angstrom crystal structure of fluorescent protein Cypet Descriptor: Green fluorescent protein Authors: Hu, X, Liu, R. Deposit date: 2009-02-26 Release date: 2010-03-09 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.6 Å) Cite: 1.6 angstrom crystal structure of fluorescent protein Cypet To be Published
5AZB	Crystal structure of Escherichia coli Lgt in complex with phosphatidylglycerol and the inhibitor palmitic acid Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, PALMITIC ACID, Prolipoprotein diacylglyceryl transferase, ... Authors: Zhang, X.C, Mao, G, Zhao, Y. Deposit date: 2015-09-30 Release date: 2016-01-27 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of E. coli lipoprotein diacylglyceryl transferase Nat Commun, 7, 2016

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