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5OLR
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BU of 5olr by Molmil
Rhamnogalacturonan lyase
Descriptor: CALCIUM ION, PHOSPHATE ION, Rhamnogalacturonan lyase, ...
Authors:Basle, A, Luis, A.S, Gilbert, H.J.
Deposit date:2017-07-28
Release date:2017-11-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides.
Nat Microbiol, 3, 2018
5O0A
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BU of 5o0a by Molmil
Crystal structure of Phosphopantetheine adenylyltransferase from Mycobacterium abcessus in complex with 5-methyl-1-phenyl-pyrazole-4-carboxylic acid (Fragment 1)
Descriptor: 5-methyl-1-phenyl-pyrazole-4-carboxylic acid, Phosphopantetheine adenylyltransferase
Authors:Thomas, S.E, Kim, S.Y, Mendes, V, Blaszczyk, M, Blundell, T.L.
Deposit date:2017-05-16
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.805 Å)
Cite:Structural Biology and the Design of New Therapeutics: From HIV and Cancer to Mycobacterial Infections: A Paper Dedicated to John Kendrew.
J. Mol. Biol., 429, 2017
5O0F
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BU of 5o0f by Molmil
Crystal structure of Phosphopantetheine adenylyltransferase from Mycobacterium abcessus in complex with 3-(indol-3-yl)propanoic acid (Fragment 5)
Descriptor: INDOLYLPROPIONIC ACID, Phosphopantetheine adenylyltransferase
Authors:Thomas, S.E, Kim, S.Y, Mendes, V, Blaszczyk, M, Blundell, T.L.
Deposit date:2017-05-16
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:Structural Biology and the Design of New Therapeutics: From HIV and Cancer to Mycobacterial Infections: A Paper Dedicated to John Kendrew.
J. Mol. Biol., 429, 2017
5O0N
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Deglycosylated Nogo Receptor with native disulfide structure 4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Reticulon-4 receptor, ...
Authors:Pronker, M.F, Tas, R.P, Vlieg, H.C, Janssen, B.J.C.
Deposit date:2017-05-16
Release date:2017-10-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction.
Acta Crystallogr D Struct Biol, 73, 2017
5OKJ
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BU of 5okj by Molmil
Non-conservatively refined structure of Gan1D-WT, a putative 6-phospho-beta-galactosidase from Geobacillus stearothermophilus, in the C2 spacegroup
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, IMIDAZOLE, ...
Authors:Lansky, S, Zehavi, A, Shoham, Y, Shoham, G.
Deposit date:2017-07-25
Release date:2017-10-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural basis for enzyme bifunctionality - the case of Gan1D from Geobacillus stearothermophilus.
FEBS J., 284, 2017
5O0T
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BU of 5o0t by Molmil
CRYSTAL STRUCTURE OF TRANS-MEMBRANE DOMAIN OF Cylindrospermum stagnale NADPH-OXIDASE 5 (NOX5)
Descriptor: DECANE, DI(HYDROXYETHYL)ETHER, EICOSANE, ...
Authors:Magnani, F, Nenci, S, Mattevi, A.
Deposit date:2017-05-17
Release date:2017-06-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures and atomic model of NADPH oxidase.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5OLY
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BU of 5oly by Molmil
5-fluorotryptophan labeled beta-phosphoglucomutase in a closed conformation, monoclinic crystal form
Descriptor: 6-O-phosphono-alpha-D-glucopyranose, Beta-phosphoglucomutase, MAGNESIUM ION, ...
Authors:Bowler, M.W, von Velsen, J.
Deposit date:2017-07-28
Release date:2017-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Observing enzyme ternary transition state analogue complexes by19F NMR spectroscopy.
Chem Sci, 8, 2017
5O1P
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BU of 5o1p by Molmil
Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase.
Descriptor: 1,2-ETHANEDIOL, Alpha-aminoadipic semialdehyde synthase, mitochondrial, ...
Authors:Kopec, J, Rembeza, E, Pena, I.A, Williams, E, Velupillai, S, Kupinska, K, Strain-Damerell, C, Goubin, S, Talon, R, Collins, P, Krojer, T, Burgess-Brown, N, Arrowsmith, C, Edwards, A, Bountra, C, von Delft, F, Arruda, P, Yue, W.W.
Deposit date:2017-05-18
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase.
To Be Published
5O1Y
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BU of 5o1y by Molmil
Structure of Nrd1 RNA binding domain in complex with RNA (GUAA)
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Protein NRD1, ...
Authors:Franco-Echevarria, E, Perez-Canadillas, J.M, Gonzalez, B.
Deposit date:2017-05-19
Release date:2017-08-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition.
Nucleic Acids Res., 45, 2017
5O32
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BU of 5o32 by Molmil
The structure of complement complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Xue, X, Wu, J, Forneris, F, Gros, P.
Deposit date:2017-05-23
Release date:2017-06-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (4.206209 Å)
Cite:Regulator-dependent mechanisms of C3b processing by factor I allow differentiation of immune responses.
Nat. Struct. Mol. Biol., 24, 2017
5O3W
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BU of 5o3w by Molmil
Structural characterization of the fast and promiscuous macrocyclase from plant - PCY1-S562A bound to Presegetalin A1
Descriptor: MAGNESIUM ION, Peptide cyclase 1, Presegetalin A1, ...
Authors:Ludewig, H, Czekster, C.M, Bent, A.F, Naismith, J.H.
Deposit date:2017-05-25
Release date:2018-02-07
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Characterization of the Fast and Promiscuous Macrocyclase from Plant PCY1 Enables the Use of Simple Substrates.
ACS Chem. Biol., 13, 2018
5O4T
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BU of 5o4t by Molmil
Crystal structure of the human BRPF1 bromodomain in complex with BZ061
Descriptor: 1,4-dimethylquinoxaline-2,3-dione, Peregrin
Authors:Zhu, J, Caflisch, A.
Deposit date:2017-05-30
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-based discovery of selective BRPF1 bromodomain inhibitors.
Eur J Med Chem, 155, 2018
5O7W
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BU of 5o7w by Molmil
Crystal structure of the 4-FLUORO RSL lectin in complex with Lewis x tetrasaccharide
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Putative fucose-binding lectin protein, ...
Authors:Varrot, A.
Deposit date:2017-06-09
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Effect of Noncanonical Amino Acids on Protein-Carbohydrate Interactions: Structure, Dynamics, and Carbohydrate Affinity of a Lectin Engineered with Fluorinated Tryptophan Analogs.
ACS Chem. Biol., 13, 2018
5O84
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BU of 5o84 by Molmil
Glutathione S-transferase Tau 23 (partially oxidized)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, FORMIC ACID, ...
Authors:Young, D.R, Van Molle, I, Tossounian, M, Messens, J.
Deposit date:2017-06-12
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Disulfide bond formation protects Arabidopsis thaliana glutathione transferase tau 23 from oxidative damage.
Biochim. Biophys. Acta, 1862, 2018
5O8Y
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BU of 5o8y by Molmil
Conformational dynamism for DNA interaction in Salmonella typhimurium RcsB response regulator.
Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, SULFATE ION, Transcriptional regulatory protein RcsB
Authors:Casino, P, Marina, A, Miguel-Romero, L, Huesa, J.
Deposit date:2017-06-14
Release date:2017-11-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational dynamism for DNA interaction in the Salmonella RcsB response regulator.
Nucleic Acids Res., 46, 2018
5O6E
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BU of 5o6e by Molmil
Structure of ScPif1 in complex with TTTGGGTT and ADP-AlF4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase PIF1, CHLORIDE ION, ...
Authors:Lu, K.Y, Chen, W.F, Rety, S, Liu, N.N, Xu, X.G.
Deposit date:2017-06-06
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.345 Å)
Cite:Insights into the structural and mechanistic basis of multifunctional S. cerevisiae Pif1p helicase.
Nucleic Acids Res., 46, 2018
5O9H
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BU of 5o9h by Molmil
Crystal structure of thermostabilised human C5a anaphylatoxin chemotactic receptor 1 (C5aR) in complex with NDT9513727
Descriptor: 1-(1,3-benzodioxol-5-yl)-~{N}-(1,3-benzodioxol-5-ylmethyl)-~{N}-[(3-butyl-2,5-diphenyl-imidazol-4-yl)methyl]methanamine, C5a anaphylatoxin chemotactic receptor 1, CITRIC ACID, ...
Authors:Robertson, N, Rappas, M, Dore, A.S, Brown, J, Bottegoni, G, Koglin, M, Cansfield, J, Jazayeri, A, Cooke, R.M, Marshall, F.H.
Deposit date:2017-06-19
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the complement C5a receptor bound to the extra-helical antagonist NDT9513727.
Nature, 553, 2018
5O6S
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BU of 5o6s by Molmil
UbV.B4R, a dimeric ubiquitin variant binding to BIRC4 RING
Descriptor: Polyubiquitin-B
Authors:Gabrielsen, M, Buetow, L, Huang, D.T.
Deposit date:2017-06-07
Release date:2017-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A General Strategy for Discovery of Inhibitors and Activators of RING and U-box E3 Ligases with Ubiquitin Variants.
Mol. Cell, 68, 2017
5O75
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BU of 5o75 by Molmil
Ube4B U-box domain
Descriptor: SULFATE ION, Ubiquitin conjugation factor E4 B
Authors:Gabrielsen, M, Buetow, L, Nakasone, M.A, Huang, D.T.
Deposit date:2017-06-08
Release date:2017-11-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.483 Å)
Cite:A General Strategy for Discovery of Inhibitors and Activators of RING and U-box E3 Ligases with Ubiquitin Variants.
Mol. Cell, 68, 2017
5O79
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BU of 5o79 by Molmil
Klebsiella pneumoniae OmpK36
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, MAGNESIUM ION, OmpK36
Authors:van den berg, B, Pathania, M.
Deposit date:2017-06-08
Release date:2018-06-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Getting Drugs into Gram-Negative Bacteria: Rational Rules for Permeation through General Porins.
Acs Infect Dis., 4, 2018
5O7U
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BU of 5o7u by Molmil
Crystal structure of the 7-Fluorotryptophan RSL lectin in complex with Lewis x tetrasaccharide
Descriptor: CALCIUM ION, MAGNESIUM ION, Putative fucose-binding lectin protein, ...
Authors:Varrot, A.
Deposit date:2017-06-09
Release date:2018-06-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Effect of Noncanonical Amino Acids on Protein-Carbohydrate Interactions: Structure, Dynamics, and Carbohydrate Affinity of a Lectin Engineered with Fluorinated Tryptophan Analogs.
ACS Chem. Biol., 13, 2018
5OCF
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BU of 5ocf by Molmil
Crystal structure of nitric oxide bound to three-domain heme-Cu nitrite reductase from Ralstonia pickettii
Descriptor: COPPER (II) ION, HEME C, NITRIC OXIDE, ...
Authors:Dong, J, Sasaki, D, Eady, R, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2017-06-30
Release date:2018-06-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Activation of redox tyrosine switch is required for ligand binding at the catalytic site in heme-cu nitrite reductases
To be published
5OCP
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BU of 5ocp by Molmil
The periplasmic binding protein component of the arabinose ABC transporter from Shewanella sp. ANA-3 bound to alpha and beta-L-arabinofuranose
Descriptor: ACETATE ION, GLYCEROL, Periplasmic binding protein/LacI transcriptional regulator, ...
Authors:Herman, R.
Deposit date:2017-07-03
Release date:2018-08-01
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:CHARACTERISATION OF A FURANOSE SPECIFIC ABC TRANSPORTER ESSENTIAL FOR ARABINOSE UTILISATION FROM THE LIGNOCELLULOSE DEGRADING BACTERIUM SHEWANELLA SP. ANA-3
To Be Published
5OG0
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BU of 5og0 by Molmil
Crystal structure of human Alanine:Glyoxylate Aminotransferase major allele (AGT-Ma) at 2.5 Angstrom; internal aldimine with PLP in the active site
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Serine--pyruvate aminotransferase
Authors:Giardina, G, Cutruzzola, F, Borri Voltattorni, C, Cellini, B, Montioli, R.
Deposit date:2017-07-11
Release date:2017-09-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Radiation damage at the active site of human alanine:glyoxylate aminotransferase reveals that the cofactor position is finely tuned during catalysis.
Sci Rep, 7, 2017
5O9D
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Crystal structure of R. ruber ADH-A, mutant Y294F, W295A, Y54F, F43H, H39Y
Descriptor: (2~{S})-2-methylpentanedioic acid, Alcohol dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Dobritzsch, D, Maurer, D, Hamnevik, E, Enugala, T.R, Widersten, M.
Deposit date:2017-06-19
Release date:2017-10-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Relaxation of nonproductive binding and increased rate of coenzyme release in an alcohol dehydrogenase increases turnover with a nonpreferred alcohol enantiomer.
FEBS J., 284, 2017

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PDB entries from 2024-10-02

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