Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2AXF
DownloadVisualize
BU of 2axf by Molmil
The Immunogenicity of a Viral Cytotoxic T Cell Epitope is controlled by its MHC-bound Conformation
Descriptor: 10-mer peptide from BZLF1 trans-activator protein, ACETIC ACID, Beta-2-microglobulin, ...
Authors:Tynan, F.E, Elhassen, D, Purcell, A.W, Burrows, J.M, Borg, N.A, Miles, J.J, Williamson, N.A, Green, K.J, Tellam, J, Kjer-Nielsen, L, McCluskey, J, Rossjohn, J, Burrows, S.R.
Deposit date:2005-09-05
Release date:2005-11-29
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The immunogenicity of a viral cytotoxic T cell epitope is controlled by its MHC-bound conformation
J.Exp.Med., 202, 2005
3AG1
DownloadVisualize
BU of 3ag1 by Molmil
Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 280 K
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Muramoto, K, Ohta, K, Shinzawa-Itoh, K, Kanda, K, Taniguchi, M, Nabekura, H, Yamashita, E, Tsukihara, T, Yoshikawa, S.
Deposit date:2010-03-19
Release date:2010-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate
Proc.Natl.Acad.Sci.USA, 107, 2010
1TED
DownloadVisualize
BU of 1ted by Molmil
Crystal structure of a type III polyketide synthase PKS18 from Mycobacterium tuberculosis
Descriptor: MYRISTIC ACID, pks18
Authors:Sankaranarayanan, R, Shanmugam, V.M, Rukmini, R.
Deposit date:2004-05-25
Release date:2004-08-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A novel tunnel in mycobacterial type III polyketide synthase reveals the structural basis for generating diverse metabolites
Nat.Struct.Mol.Biol., 11, 2004
1T2N
DownloadVisualize
BU of 1t2n by Molmil
Structure of a thermostable triple mutant of Bacillus subtilis lipase obtained through directed evolution
Descriptor: Lipase, POTASSIUM ION
Authors:Rajakumara, E, Sankaranarayanan, R.
Deposit date:2004-04-22
Release date:2004-11-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of selection and thermostability of laboratory evolved Bacillus subtilis lipase.
J.Mol.Biol., 341, 2004
2B1M
DownloadVisualize
BU of 2b1m by Molmil
Crystal structure of a papain-fold protein without the catalytic cysteine from seeds of Pachyrhizus erosus
Descriptor: DI(HYDROXYETHYL)ETHER, SPE31, TETRAETHYLENE GLYCOL, ...
Authors:Zhang, M, Wei, Z, Chang, S.
Deposit date:2005-09-16
Release date:2006-10-03
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a papain-fold protein without the catalytic residue: a novel member in the cysteine proteinase family
J.Mol.Biol., 358, 2006
3AIX
DownloadVisualize
BU of 3aix by Molmil
Crystal structure of PCNA2-PCNA3 complex from Sulfolobus tokodaii (I222)
Descriptor: DNA polymerase sliding clamp B, DNA polymerase sliding clamp C, SULFATE ION
Authors:Kawai, A, Higuchi, S, Miyamoto, S.
Deposit date:2010-05-18
Release date:2011-05-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex
J.Struct.Biol., 174, 2011
3AW7
DownloadVisualize
BU of 3aw7 by Molmil
Crystal structure of tetragonal hen egg white lysozyme at 71.9% relative humidity
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Takayama, Y, Nakasako, M.
Deposit date:2011-03-11
Release date:2011-03-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A few low-frequency normal modes predominantly contribute to conformational responses of hen egg white lysozyme in the tetragonal crystal to variations of molecular packing controlled by environmental humidity
Biophys.Chem., 159, 2011
2RJH
DownloadVisualize
BU of 2rjh by Molmil
Crystal structure of biosynthetic alaine racemase in D-cycloserine-bound form from Escherichia coli
Descriptor: Alanine racemase, D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE, SULFATE ION
Authors:Wu, D, Hu, T, Zhang, L, Jiang, H, Shen, X.
Deposit date:2007-10-15
Release date:2008-07-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Residues Asp164 and Glu165 at the substrate entryway function potently in substrate orientation of alanine racemase from E. coli: Enzymatic characterization with crystal structure analysis
Protein Sci., 17, 2008
2CL5
DownloadVisualize
BU of 2cl5 by Molmil
Catechol-O-methyltransferase in complex with an inhibitor
Descriptor: (3,4-DIHYDROXY-2-NITROPHENYL)(PHENYL)METHANONE, (R,R)-2,3-BUTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Palma, P.N, Rodrigues, M.L, Archer, M, Bonifacio, M.J, Loureiro, A.I, Learmonth, D.A, Carrondo, M.A, Soares-Da-Silva, P.
Deposit date:2006-04-26
Release date:2006-06-28
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Comparative Study of Ortho- and Meta-Nitrated Inhibitors of Catechol-O-Methyltransferase: Interactions with the Active Site and Regioselectivity of O-Methylation.
Mol.Pharmacol., 70, 2006
3W67
DownloadVisualize
BU of 3w67 by Molmil
Crystal structure of mouse alpha-tocopherol transfer protein in complex with alpha-tocopherol and phosphatidylinositol-(3,4)-bisphosphate
Descriptor: (2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL, (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate, Alpha-tocopherol transfer protein
Authors:Ohto, U, Satow, Y.
Deposit date:2013-02-11
Release date:2013-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Impaired alpha-TTP-PIPs interaction underlies familial vitamin E deficiency
Science, 340, 2013
3AYE
DownloadVisualize
BU of 3aye by Molmil
Crystal structure of galectin-3 CRD domian complexed with lactose
Descriptor: Galectin-3, SULFATE ION, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Bian, C.F, Li, D.F, Wang, D.C.
Deposit date:2011-05-04
Release date:2011-10-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for distinct binding properties of the human galectins to thomsen-friedenreich antigen
Plos One, 6, 2011
2RKE
DownloadVisualize
BU of 2rke by Molmil
The Structure of rat cytosolic PEPCK in complex with sulfoacetate.
Descriptor: MANGANESE (II) ION, Phosphoenolpyruvate carboxykinase, cytosolic [GTP], ...
Authors:Sullivan, S.M, Stiffin, R.M, Carlson, G.M, Holyoak, T.
Deposit date:2007-10-16
Release date:2008-01-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Differential Inhibition of Cytosolic PEPCK by Substrate Analogues. Kinetic and Structural Characterization of Inhibitor Recognition.
Biochemistry, 47, 2008
1XK1
DownloadVisualize
BU of 1xk1 by Molmil
Crystal Structures of the G139A, G139A-NO and G143H Mutants of Human Heme Oxygenase-1
Descriptor: Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lad, L, Ortiz de Montellano, P.R, Poulos, T.L.
Deposit date:2004-09-26
Release date:2005-12-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structures of the G139A, G139A-NO and G143H mutants of human heme oxygenase-1. A finely tuned hydrogen-bonding network controls oxygenase versus peroxidase activity.
J.Biol.Inorg.Chem., 10, 2005
4GSS
DownloadVisualize
BU of 4gss by Molmil
HUMAN GLUTATHIONE S-TRANSFERASE P1-1 Y108F MUTANT
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLUTATHIONE S-TRANSFERASE, S-HEXYLGLUTATHIONE
Authors:Oakley, A, Rossjohn, J, Parker, M.
Deposit date:1997-01-20
Release date:1998-01-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Multifunctional role of Tyr 108 in the catalytic mechanism of human glutathione transferase P1-1. Crystallographic and kinetic studies on the Y108F mutant enzyme.
Biochemistry, 36, 1997
1PF3
DownloadVisualize
BU of 1pf3 by Molmil
Crystal Structure of the M441L mutant of the multicopper oxidase CueO
Descriptor: Blue copper oxidase cueO, COPPER (II) ION, CU-CL-CU LINKAGE
Authors:Roberts, S.A, Wildner, G.F, Grass, G, Weichsel, A, Ambrus, A, Rensing, C, Montfort, W.R.
Deposit date:2003-05-23
Release date:2003-06-24
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Labile Regulatory Copper Ion Lies Near the T1 Copper Site in the Multicopper Oxidase CueO.
J.Biol.Chem., 278, 2003
2RJW
DownloadVisualize
BU of 2rjw by Molmil
The crystal structure of the H41Y mutant of villin headpiece, P61 SPACE GROUP.
Descriptor: Villin-1
Authors:Meng, J, Mcknight, C.J.
Deposit date:2007-10-16
Release date:2009-02-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Heterogeneity and dynamics in villin headpiece crystal structures.
Acta Crystallogr.,Sect.D, 65, 2009
2KM2
DownloadVisualize
BU of 2km2 by Molmil
Galectin-1 dimer
Descriptor: Galectin-1
Authors:Nesmelova, I.V, Ermakova, E, Daragan, V.A, Pang, M, Baum, L.G, Mayo, K.H.
Deposit date:2009-07-16
Release date:2010-04-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Lactose binding to galectin-1 modulates structural dynamics, increases conformational entropy, and occurs with apparent negative cooperativity.
J.Mol.Biol., 397, 2010
2RK7
DownloadVisualize
BU of 2rk7 by Molmil
The Structure of rat cytosolic PEPCK in complex with oxalate
Descriptor: MANGANESE (II) ION, OXALATE ION, Phosphoenolpyruvate carboxykinase, ...
Authors:Sullivan, S.M, Stiffin, R.M, Carlson, G.M, Holyoak, T.
Deposit date:2007-10-16
Release date:2008-01-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Differential Inhibition of Cytosolic PEPCK by Substrate Analogues. Kinetic and Structural Characterization of Inhibitor Recognition.
Biochemistry, 47, 2008
3AYA
DownloadVisualize
BU of 3aya by Molmil
Crystal structure of galectin-3 CRD domian complexed with Thomsen-Friedenreich antigen
Descriptor: Galectin-3, SULFATE ION, THREONINE, ...
Authors:Bian, C.F, Li, D.F, Wang, D.C.
Deposit date:2011-05-04
Release date:2011-10-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for distinct binding properties of the human galectins to thomsen-friedenreich antigen
Plos One, 6, 2011
2VG9
DownloadVisualize
BU of 2vg9 by Molmil
Crystal structure of Loop Swap mutant of Necallimastix patriciarum Xyn11A
Descriptor: ACETATE ION, BIFUNCTIONAL ENDO-1,4-BETA-XYLANASE A, CADMIUM ION
Authors:Vardakou, M, Dumon, C, Flint, J.E, Murray, J.W, Christakopoulos, P, Weiner, D.P, Juge, N, Lewis, R.J, Gilbert, H.J.
Deposit date:2007-11-09
Release date:2007-12-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Understanding the Structural Basis for Substrate and Inhibitor Recognition in Eukaryotic Gh11 Xylanases.
J.Mol.Biol., 375, 2008
3E3E
DownloadVisualize
BU of 3e3e by Molmil
Human Thioredoxin Double Mutant C35S,C73R
Descriptor: HEXAETHYLENE GLYCOL, Thioredoxin
Authors:Hall, G, Emsley, J.
Deposit date:2008-08-07
Release date:2010-03-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structure of human thioredoxin exhibits a large conformational change.
Protein Sci., 19, 2010
3E79
DownloadVisualize
BU of 3e79 by Molmil
Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37
Descriptor: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, CALCIUM ION, CHLORIDE ION, ...
Authors:Sippel, K.H, Robbins, A.H, Reutzel, R, Domsic, J, McKenna, R.
Deposit date:2008-08-18
Release date:2008-10-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37.
Acta Crystallogr.,Sect.D, 64, 2008
3E84
DownloadVisualize
BU of 3e84 by Molmil
Structure-function Analysis of 2-Keto-3-deoxy-D-glycero-D-galacto-nononate-9-phosphate (KDN) Phosphatase Defines a New Clad Within the Type C0 HAD Subfamily
Descriptor: 1,2-ETHANEDIOL, Acylneuraminate cytidylyltransferase, DI(HYDROXYETHYL)ETHER, ...
Authors:Lu, Z, Wang, L, Dunaway-Mariano, D, Allen, K.N.
Deposit date:2008-08-19
Release date:2008-11-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure-Function Analysis of 2-Keto-3-deoxy-D-glycero-D-galactonononate-9-phosphate Phosphatase Defines Specificity Elements in Type C0 Haloalkanoate Dehalogenase Family Members.
J.Biol.Chem., 284, 2009
2UZJ
DownloadVisualize
BU of 2uzj by Molmil
Crystal structure of the mature streptococcal cysteine protease, mSpeB
Descriptor: N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE, STREPTOPAIN
Authors:Olsen, J.G, Dagil, R, Niclasen, L.M, Soerensen, O.E, Kragelund, B.B.
Deposit date:2008-09-16
Release date:2009-09-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure of the Mature Streptococcal Cysteine Protease Exotoxin Mspeb in its Active Dimeric Form.
J.Mol.Biol., 393, 2009
1URA
DownloadVisualize
BU of 1ura by Molmil
ALKALINE PHOSPHATASE (D51ZN)
Descriptor: ALKALINE PHOSPHATASE, PHOSPHATE ION, ZINC ION
Authors:Tibbitts, T.T, Murphy, J.E, Kantrowitz, E.R.
Deposit date:1996-02-03
Release date:1996-07-11
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase.
J.Mol.Biol., 257, 1996

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon