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8R5W
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BU of 8r5w by Molmil
Crystal structure of the three anaphylatoxin-like modules in fibulin-2
Descriptor: Fibulin-2
Authors:Sohail, A.A, Koski, M.K, Ruddock, L.W.
Deposit date:2023-11-18
Release date:2024-07-10
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Biophysical and structural studies of fibulin-2.
Sci Rep, 14, 2024
6XKK
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BU of 6xkk by Molmil
Cryo-EM structure of the NLRP1-CARD filament
Descriptor: NACHT, LRR and PYD domains-containing protein 1
Authors:Hollingsworth, L.R, David, L, Li, Y, Sharif, H, Fontana, P, Fu, T, Wu, H.
Deposit date:2020-06-26
Release date:2020-11-25
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.72 Å)
Cite:Mechanism of filament formation in UPA-promoted CARD8 and NLRP1 inflammasomes.
Nat Commun, 12, 2021
1KF8
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BU of 1kf8 by Molmil
Atomic resolution structure of RNase A at pH 8.8
Descriptor: pancreatic ribonuclease
Authors:Berisio, R, Sica, F, Lamzin, V.S, Wilson, K.S, Zagari, A, Mazzarella, L.
Deposit date:2001-11-19
Release date:2001-12-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Atomic resolution structures of ribonuclease A at six pH values.
Acta Crystallogr.,Sect.D, 58, 2002
4YGO
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BU of 4ygo by Molmil
Dodecameric structure of spermidine N-acetyltransferase from Vibrio cholerae in intermediate state
Descriptor: CALCIUM ION, METHANOL, Spermidine n1-acetyltransferase
Authors:Filippova, E.V, Minasov, G, Kiryukhina, O, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-02-26
Release date:2015-10-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substrate-Induced Allosteric Change in the Quaternary Structure of the Spermidine N-Acetyltransferase SpeG.
J.Mol.Biol., 427, 2015
4YIT
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BU of 4yit by Molmil
Crystal Structure of LAGLIDADG Meganuclease I-AabMI Bound to Uncleaved DNA
Descriptor: CALCIUM ION, DNA (25-MER), DNA (25MER), ...
Authors:Hallinan, J.P, Stoddard, B.L.
Deposit date:2015-03-02
Release date:2016-03-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity.
Structure, 24, 2016
6XC1
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BU of 6xc1 by Molmil
Crystal structure of bacteriophage T4 spackle and lysozyme in orthorhombic form
Descriptor: 1,2-ETHANEDIOL, ISOPROPYL ALCOHOL, Lysozyme, ...
Authors:Shi, K, Oakland, J.T, Kurniawan, F, Moeller, N.H, Aihara, H.
Deposit date:2020-06-07
Release date:2020-12-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural basis of superinfection exclusion by bacteriophage T4 Spackle.
Commun Biol, 3, 2020
3NG1
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BU of 3ng1 by Molmil
N AND GTPASE DOMAINS OF THE SIGNAL SEQUENCE RECOGNITION PROTEIN FFH FROM THERMUS AQUATICUS
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, SIGNAL SEQUENCE RECOGNITION PROTEIN FFH, ...
Authors:Freymann, D.M, Stroud, R.M, Walter, P.
Deposit date:1998-09-13
Release date:1999-07-30
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Functional changes in the structure of the SRP GTPase on binding GDP and Mg2+GDP.
Nat.Struct.Biol., 6, 1999
7E81
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BU of 7e81 by Molmil
Cryo-EM structure of the flagellar MS ring with FlgB-Dc loop and FliE-helix 1 from Salmonella
Descriptor: Flagellar M-ring protein, FlgB-Dc loop, FliE helix 1
Authors:Tan, J.X, Chang, S.H, Wang, X.F, Xu, C.H, Zhou, Y, Zhang, X, Zhu, Y.Q.
Deposit date:2021-02-28
Release date:2021-04-28
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural basis of assembly and torque transmission of the bacterial flagellar motor.
Cell, 184, 2021
4Y5W
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BU of 4y5w by Molmil
Transcription factor-DNA complex
Descriptor: DNA (5'-D(P*AP*TP*GP*GP*AP*TP*TP*TP*CP*CP*TP*AP*GP*GP*AP*AP*GP*AP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*TP*CP*TP*TP*CP*CP*TP*AP*GP*GP*AP*AP*AP*TP*CP*CP*AP*T)-3'), Signal transducer and activator of transcription 6
Authors:Li, J, Niu, F, Ouyang, S, Liu, Z.
Deposit date:2015-02-12
Release date:2016-02-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.104 Å)
Cite:Structural basis for DNA recognition by STAT6
Proc.Natl.Acad.Sci.USA, 113, 2016
8S41
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BU of 8s41 by Molmil
The structure of the copia retrotransposon icosahedral capsid (T=9)
Descriptor: Copia VLP protein
Authors:Klumpe, S, Beck, F, Briggs, J.A.G, Beck, M, Plitzko, J.M.
Deposit date:2024-02-20
Release date:2025-03-05
Last modified:2025-04-30
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:In-cell structure and snapshots of copia retrotransposons in intact tissue by cryo-ET.
Cell, 188, 2025
6XN0
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BU of 6xn0 by Molmil
Crystal structure of GH43_1 enzyme from Xanthomonas citri
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Morais, M.A.B, Tonoli, C.C.C, Santos, C.R, Murakami, M.T.
Deposit date:2020-07-02
Release date:2020-12-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.709 Å)
Cite:Two distinct catalytic pathways for GH43 xylanolytic enzymes unveiled by X-ray and QM/MM simulations.
Nat Commun, 12, 2021
1AXS
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BU of 1axs by Molmil
MATURE OXY-COPE CATALYTIC ANTIBODY WITH HAPTEN
Descriptor: (1S,2S,5S)2-(4-GLUTARIDYLBENZYL)-5-PHENYL-1-CYCLOHEXANOL, CADMIUM ION, OXY-COPE CATALYTIC ANTIBODY
Authors:Mundorff, E.C, Ulrich, H.D, Stevens, R.C.
Deposit date:1997-10-20
Release date:1998-02-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The interplay between binding energy and catalysis in the evolution of a catalytic antibody.
Nature, 389, 1997
4Y40
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BU of 4y40 by Molmil
Structure of Vaspin mutant D305C V383C
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Serpin A12
Authors:Pippel, J, Strater, N, Ulbricht, D, Schultz, S, Meier, R, Heiker, J.T.
Deposit date:2015-02-10
Release date:2015-08-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A unique serpin P1' glutamate and a conserved beta-sheet C arginine are key residues for activity, protease recognition and stability of serpinA12 (vaspin).
Biochem.J., 470, 2015
8J5A
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BU of 8j5a by Molmil
Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A)
Descriptor: Ferritin heavy chain, SODIUM ION
Authors:Kawakami, K, Maki-Yonekura, S, Hamaguchi, T, Takaba, K, Yonekura, K.
Deposit date:2023-04-21
Release date:2023-07-12
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (1.19 Å)
Cite:Measurement of charges and chemical bonding in a cryo-EM structure.
Commun Chem, 6, 2023
1KF3
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BU of 1kf3 by Molmil
Atomic Resolution Structure of RNase A at pH 5.9
Descriptor: SULFATE ION, pancreatic ribonuclease
Authors:Berisio, R, Sica, F, Lamzin, V.S, Wilson, K.S, Zagari, A, Mazzarella, L.
Deposit date:2001-11-19
Release date:2001-12-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Atomic resolution structures of ribonuclease A at six pH values.
Acta Crystallogr.,Sect.D, 58, 2002
6XTB
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BU of 6xtb by Molmil
Subunit BBS 5 of the human core BBSome complex
Descriptor: Bardet-Biedl syndrome 5 protein
Authors:Klink, B.U, Raunser, S, Gatsogiannis, C.
Deposit date:2020-01-15
Release date:2020-02-19
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structure of the human BBSome core complex.
Elife, 9, 2020
8SP5
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BU of 8sp5 by Molmil
LINE-1 retrotransposon endonuclease domain complex with Mn2+
Descriptor: LINE-1 retrotransposon endonuclease, MANGANESE (II) ION, SULFATE ION
Authors:D'Ordine, A.M, Jogl, G, Sedivy, J.M.
Deposit date:2023-05-02
Release date:2024-05-22
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Identification and characterization of small molecule inhibitors of the LINE-1 retrotransposon endonuclease.
Nat Commun, 15, 2024
8SP7
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BU of 8sp7 by Molmil
LINE-1 retrotransposon endonuclease domain complex with tranexamic acid
Descriptor: LINE-1 retrotransposon endonuclease, SULFATE ION, TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID
Authors:D'Ordine, A.M, Jogl, G, Sedivy, J.M.
Deposit date:2023-05-02
Release date:2024-05-22
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Identification and characterization of small molecule inhibitors of the LINE-1 retrotransposon endonuclease.
Nat Commun, 15, 2024
8SGD
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BU of 8sgd by Molmil
Crystal Structure of CDC3(G) - CDC10(Delta 1-10) heterocomplex from Saccharomyces cerevisiae
Descriptor: CDC10 isoform 1, CDC3 isoform 1, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Saladino, G.C.R, Leonardo, D.A, Pereira, H.M, Garratt, R.C.
Deposit date:2023-04-12
Release date:2023-06-28
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:A key piece of the puzzle: The central tetramer of the Saccharomyces cerevisiae septin protofilament and its implications for self-assembly.
J.Struct.Biol., 215, 2023
8PY1
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BU of 8py1 by Molmil
Sensor domain of Asticcacaulis benevestitus chemoreceptor in complex with formate.
Descriptor: FORMIC ACID, Methyl-accepting chemotaxis protein, SULFATE ION
Authors:Gavira, J.A, Krell, T, Monteagudo-Cascales, E, Velando, F, Matilla, M.A, Martinez-Rodriguez, S.
Deposit date:2023-07-24
Release date:2025-02-12
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Bacterial sensor evolved by decreasing complexity.
Proc.Natl.Acad.Sci.USA, 122, 2025
167L
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BU of 167l by Molmil
PROTEIN FLEXIBILITY AND ADAPTABILITY SEEN IN 25 CRYSTAL FORMS OF T4 LYSOZYME
Descriptor: T4 LYSOZYME
Authors:Weaver, L.H, Zhang, X.-J, Matthews, B.W.
Deposit date:1995-03-24
Release date:1995-07-10
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme.
J.Mol.Biol., 250, 1995
180L
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BU of 180l by Molmil
PROTEIN FLEXIBILITY AND ADAPTABILITY SEEN IN 25 CRYSTAL FORMS OF T4 LYSOZYME
Descriptor: LYSOZYME
Authors:Kuroki, R, Weaver, L, Zhang, X.-J, Matthews, B.W.
Deposit date:1995-03-24
Release date:1996-04-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme.
J.Mol.Biol., 250, 1995
175L
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BU of 175l by Molmil
PROTEIN FLEXIBILITY AND ADAPTABILITY SEEN IN 25 CRYSTAL FORMS OF T4 LYSOZYME
Descriptor: T4 LYSOZYME
Authors:Baldwin, E, Matthews, B.W.
Deposit date:1995-03-24
Release date:1995-07-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme.
J.Mol.Biol., 250, 1995
8PY0
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BU of 8py0 by Molmil
Sensor domain of Oscillibacter ruminantium chemoreceptor in complex with formate.
Descriptor: FORMIC ACID, Ligand Binding domain (LBD) Chemoreceptor, SODIUM ION
Authors:Gavira, J.A, Krell, T, Monteagudo-Cascales, E, Velando, F, Matilla, M.A, Martinez-Rodriguez, S.
Deposit date:2023-07-24
Release date:2025-02-12
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Bacterial sensor evolved by decreasing complexity.
Proc.Natl.Acad.Sci.USA, 122, 2025
1OQB
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BU of 1oqb by Molmil
The Crystal Structure of the one-iron form of the di-iron center in Stearoyl Acyl Carrier Protein Desaturase from Ricinus Communis (Castor Bean).
Descriptor: Acyl-[acyl-carrier protein] desaturase, FE (II) ION
Authors:Moche, M, Shanklin, J, Ghoshal, A.K, Lindqvist, Y.
Deposit date:2003-03-07
Release date:2003-05-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Azide and Acetate Complexes plus two iron-depleted Crystal Structures of the Di-iron Enzyme delta9 Stearoyl-ACP Desaturase-Implications for Oxygen Activation and Catalytic Intermediates
J.Biol.Chem., 278, 2003

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