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7T9J	Cryo-EM structure of the SARS-CoV-2 Omicron spike protein Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Tuttle, K.S, Subramaniam, S. Deposit date: 2021-12-19 Release date: 2021-12-29 Last modified: 2022-05-18 Method: ELECTRON MICROSCOPY (2.79 Å) Cite: SARS-CoV-2 Omicron variant: Antibody evasion and cryo-EM structure of spike protein-ACE2 complex. Science, 375, 2022
7T9K	Cryo-EM structure of SARS-CoV-2 Omicron spike protein in complex with human ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Tuttle, K.S, Subramaniam, S. Deposit date: 2021-12-19 Release date: 2021-12-29 Last modified: 2022-05-18 Method: ELECTRON MICROSCOPY (2.45 Å) Cite: SARS-CoV-2 Omicron variant: Antibody evasion and cryo-EM structure of spike protein-ACE2 complex. Science, 375, 2022
7SY5	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417N mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (2.59 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
6UXN	Crystal structure of BAK core domain BH3-groove-dimer in complex with phosphatidylserine Descriptor: Bcl-2 homologous antagonist/killer, GLYCEROL, O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine, ... Authors: Cowan, A.D, Colman, P.M, Czabotar, P.E. Deposit date: 2019-11-07 Release date: 2020-09-02 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.49 Å) Cite: BAK core dimers bind lipids and can be bridged by them. Nat.Struct.Mol.Biol., 27, 2020
7SXT	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y mutant spike protein ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (2.31 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SXS	Cryo-EM structure of the SARS-CoV-2 D614G,L452R mutant spike protein ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7ZTA	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Leroy, E.C, Perry, T.N, Renault, T.T, Innis, C.A. Deposit date: 2022-05-09 Release date: 2023-04-12 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Tetracenomycin X sequesters peptidyl-tRNA during translation of QK motifs. Nat.Chem.Biol., 19, 2023
7SY3	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
6UWR	Clostridium difficile binary toxin translocase CDTb in asymmetric tetradecamer conformation Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION Authors: Xu, X, Pozharski, E, des Georges, A. Deposit date: 2019-11-05 Release date: 2020-01-22 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structure of the cell-binding component of theClostridium difficilebinary toxin reveals a di-heptamer macromolecular assembly. Proc.Natl.Acad.Sci.USA, 117, 2020
6UZC	Portal vertex structure of bacteriophage T4 Descriptor: Major capsid protein, Portal protein Authors: Fang, Q, Fokine, A, Rao, V.B. Deposit date: 2019-11-14 Release date: 2020-04-29 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structural morphing in a symmetry-mismatched viral vertex. Nat Commun, 11, 2020
7SXR	Cryo-EM structure of the SARS-CoV-2 D614G mutant spike protein ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
6UZ3	Cardiac sodium channel Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Jiang, D, Shi, H, Tonggu, L, Lenaeus, M.J, Zheng, N, Catterall, W.A. Deposit date: 2019-11-14 Release date: 2020-01-01 Last modified: 2020-07-29 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structure of the Cardiac Sodium Channel. Cell, 180, 2020
7SXU	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K mutant spike protein ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SXZ	Cryo-EM structure of the SARS-CoV-2 D614G,L452R mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (2.61 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SXX	Cryo-EM structure of the SARS-CoV-2 D614G mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (2.66 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SY1	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
6V21	Mouse heavy chain apoferritin determined using single-particle cryo-EM at 200 keV Descriptor: Ferritin heavy chain Authors: Wu, M, Lander, G.C, Herzik, M.A. Deposit date: 2019-11-21 Release date: 2020-02-12 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (1.75 Å) Cite: Sub-2 Angstrom resolution structure determination using single-particle cryo-EM at 200 keV. J Struct Biol X, 4, 2020
7SXW	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417T mutant spike protein ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
7SXV	Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417N mutant spike protein ectodomain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S. Deposit date: 2021-11-24 Release date: 2021-12-29 Last modified: 2022-01-05 Method: ELECTRON MICROSCOPY (2.79 Å) Cite: Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding. Cell Rep, 37, 2021
6V99	Agrobacterium tumefaciens ADP-Glucose pyrophosphorylase- S72D in the presence of sulfate Descriptor: Glucose-1-phosphate adenylyltransferase, SULFATE ION Authors: Zheng, Y, Alghamdi, M.A, Ballicora, M.A, Liu, D. Deposit date: 2019-12-13 Release date: 2020-12-16 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.287 Å) Cite: Site-directed mutagenesis of Serine-72 reveals the location of the fructose 6-phosphate regulatory site of the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase. Protein Sci., 31, 2022
6VFU	Crystal structure of human protocadherin 19 EC1-EC4 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Harrison, O.J, Brasch, J, Shapiro, L. Deposit date: 2020-01-06 Release date: 2020-03-11 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins. Cell Rep, 30, 2020
6VC7	Structure of the F349A mutant of the periplasmic domain of YejM from Salmonella typhimurium Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ETHANOLAMINE, ... Authors: Gabale, U, Ressl, S. Deposit date: 2019-12-20 Release date: 2020-08-26 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.05 Å) Cite: The essential inner membrane protein YejM is a metalloenzyme. Sci Rep, 10, 2020
7TB4	Cryo-EM structure of the spike of SARS-CoV-2 Omicron variant of concern Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Surface glycoprotein Authors: Zhou, T, Tsybovsky, T, Kwong, P.D. Deposit date: 2021-12-21 Release date: 2022-01-12 Last modified: 2022-01-19 Method: ELECTRON MICROSCOPY (3.29 Å) Cite: Antibodies with potent and broad neutralizing activity against antigenically diverse and highly transmissible SARS-CoV-2 variants. Biorxiv, 2021
7SZH	Structure of the Rieske Non-heme Iron Oxygenase SxtT with beta-saxitoxinol Bound Descriptor: CHLORIDE ION, FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, ... Authors: Bridwell-Rabb, J, Liu, J. Deposit date: 2021-11-27 Release date: 2022-01-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Design principles for site-selective hydroxylation by a Rieske oxygenase. Nat Commun, 13, 2022
7TAT	SARS-CoV-2 spike in complex with the S2K146 neutralizing antibody Fab fragment (two receptor-binding domains open) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S2K146 Fab heavy chain, ... Authors: Park, Y.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D. Deposit date: 2021-12-21 Release date: 2022-01-12 Last modified: 2022-02-09 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Antibody-mediated broad sarbecovirus neutralization through ACE2 molecular mimicry. Science, 375, 2022

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