PDB: 79225 resultsInfo pagesStatus searchChemie searchBIRD

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2R92	Elongation complex of RNA polymerase II with artificial RdRP scaffold Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Lehmann, E, Brueckner, F, Cramer, P. Deposit date: 2007-09-12 Release date: 2007-11-27 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Molecular basis of RNA-dependent RNA polymerase II activity. Nature, 450, 2007
7D58	cryo-EM structure of human RNA polymerase III in elongating state Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Wang, Q, Wan, F, Lan, P, Wu, J, Lei, M. Deposit date: 2020-09-25 Release date: 2021-02-17 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural insights into transcriptional regulation of human RNA polymerase III. Nat.Struct.Mol.Biol., 28, 2021
2R93	Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Lehmann, E, Brueckner, F, Cramer, P. Deposit date: 2007-09-12 Release date: 2007-11-27 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (4 Å) Cite: Molecular basis of RNA-dependent RNA polymerase II activity. Nature, 450, 2007
7L1T	Crystal structure of human holo SepSecS Descriptor: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, O-phosphoseryl-tRNA(Sec) selenium transferase, PHOSPHATE ION Authors: Puppala, A, Castillo Suchkou, J, Simonovic, M. Deposit date: 2020-12-15 Release date: 2022-02-09 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural basis for the tRNA-dependent activation of the terminal complex of selenocysteine synthesis in humans. Nucleic Acids Res., 2023
7JL2	Cryo-EM structure of MDA5-dsRNA filament in complex with TRIM65 PSpry domain (Trimer) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Interferon-induced helicase C domain-containing protein 1, MAGNESIUM ION, ... Authors: Kato, K, Ahmad, S, Hur, S. Deposit date: 2020-07-29 Release date: 2020-12-09 Last modified: 2025-06-04 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structural analysis of RIG-I-like receptors reveals ancient rules of engagement between diverse RNA helicases and TRIM ubiquitin ligases. Mol.Cell, 81, 2021
7JL0	Cryo-EM structure of MDA5-dsRNA in complex with TRIM65 PSpry domain (Monomer) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Interferon-induced helicase C domain-containing protein 1, MAGNESIUM ION, ... Authors: Kato, K, Ahmad, S, Hur, S. Deposit date: 2020-07-29 Release date: 2020-12-09 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structural analysis of RIG-I-like receptors reveals ancient rules of engagement between diverse RNA helicases and TRIM ubiquitin ligases. Mol.Cell, 81, 2021
2DU3	Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys and O-phosphoserine Descriptor: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA Authors: Fukunaga, R. Deposit date: 2006-07-20 Release date: 2007-03-13 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea. Nat.Struct.Mol.Biol., 14, 2007
2DU4	Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys Descriptor: O-phosphoseryl-tRNA synthetase, tRNA Authors: Fukunaga, R. Deposit date: 2006-07-20 Release date: 2007-03-13 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea. Nat.Struct.Mol.Biol., 14, 2007
2DU5	Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ("opal complex") Descriptor: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA Authors: Fukunaga, R. Deposit date: 2006-07-20 Release date: 2007-03-13 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea. Nat.Struct.Mol.Biol., 14, 2007
2DU6	Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAAmber and O-phosphoserine ("amber complex") Descriptor: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA Authors: Fukunaga, R. Deposit date: 2006-07-20 Release date: 2007-03-13 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea. Nat.Struct.Mol.Biol., 14, 2007
6SCY	U34-tRNA thiolase NcsA from Methanococcus maripaludis with its [4Fe-4S] cluster Descriptor: IRON/SULFUR CLUSTER, SULFATE ION, ZINC ION, ... Authors: Bimai, O, Legrand, P, Golinelli-Pimpaneau, B. Deposit date: 2019-07-25 Release date: 2020-08-26 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.81 Å) Cite: The thiolation of uridine 34 in tRNA, which controls protein translation, depends on a [4Fe-4S] cluster in the archaeum Methanococcus maripaludis. Sci Rep, 13, 2023
1V76	Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3 Descriptor: RNase P protein Ph1771p, SULFATE ION Authors: Numata, T, Kakuta, Y, Kimura, M. Deposit date: 2003-12-12 Release date: 2004-10-05 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of archaeal ribonuclease P protein Ph1771p from Pyrococcus horikoshii OT3: an archaeal homolog of eukaryotic ribonuclease P protein Rpp29 Rna, 10, 2004
2DU7	Crystal structure of Methanococcus jannacshii O-phosphoseryl-tRNA synthetase Descriptor: O-phosphoseryl-tRNA synthetase Authors: Fukunaga, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-07-20 Release date: 2007-03-13 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea. Nat.Struct.Mol.Biol., 14, 2007
1N53	SOLUTION STRUCTURE OF B. SUBTILIS T BOX ANTITERMINATOR RNA Descriptor: RNA (5'-R(*GP*AP*GP*GP*GP*UP*GP*GP*AP*AP*CP*CP*GP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*CP*CP*CP*UP*C)-3') Authors: Gerdeman, M.S, Henkin, T.M, Hines, J.V. Deposit date: 2002-11-04 Release date: 2003-04-29 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution Structure of the Bacillus subtilis T-box Antiterminator RNA: Seven Nucleotide Bulge Characterized by Stacking and Flexibility J.Mol.Biol., 326, 2003
8GKH	Structure of the Spizellomyces punctatus Fanzor (SpuFz) in complex with omega RNA and target DNA Descriptor: DNA (35-MER), DNA (5'-D(P*CP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3'), MAGNESIUM ION, ... Authors: Xu, P, Saito, M, Zhang, F. Deposit date: 2023-03-19 Release date: 2023-07-05 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Fanzor is a eukaryotic programmable RNA-guided endonuclease. Nature, 620, 2023
7SHX	A functional SNP regulates E-cadherin expression by dynamically remodeling the 3D structure of a promoter-associated non-coding RNA transcript, NMR, minimized average structure Descriptor: RNA (94-MER) Authors: Sharma, S, Varani, G. Deposit date: 2021-10-11 Release date: 2022-10-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: A functional SNP regulates E-cadherin expression by dynamically remodeling the 3D structure of a promoter-associated non-coding RNA transcript. Nucleic Acids Res., 50, 2022
2JXV	Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans Descriptor: RNA (33-MER) Authors: Cevec, M, Thibaudeau, C, Plavec, J. Deposit date: 2007-11-30 Release date: 2008-04-29 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans. Nucleic Acids Res., 36, 2008
2GJW	RNA Recognition and Cleavage by an Splicing Endonuclease Descriptor: 5'-R(*AP*GP*GP*UP*CP*GP*C)-3', 5'-R(*GP*CP*GP*AP*CP*CP*GP*AP*CP*CP*AP*(DU)P*AP*GP*CP*UP*GP*CP*A)-3', 5'-R(*UP*GP*CP*AP*GP*CP*GP*GP*UP*CP*AP*(A23))-3', ... Authors: Xue, S, Calvin, K, Li, H. Deposit date: 2006-03-31 Release date: 2006-09-12 Last modified: 2025-05-14 Method: X-RAY DIFFRACTION (2.85 Å) Cite: RNA Recognition and Cleavage by an Splicing Endonuclease Science, 312, 2006
2KPV	NMR model of the first let-7 miRNA complementary site (LCS1) in 3'-UTR of lin-41 mRNA from C. elegans Descriptor: RNA (34-MER) Authors: Cevec, M, Thibaudeau, C, Plavec, J. Deposit date: 2009-10-20 Release date: 2010-08-04 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans. Nucleic Acids Res., 38, 2010
8I2J	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1-(4-methoxyphenyl)ethanone, SULFATE ION, TRYPTOPHANYL-5'AMP, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.65 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2M	The crystal structure of homodimeric E. coli tryptophanyl-tRNA synthetase bound with niraparib at one of its two active sites Descriptor: 2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide, SULFATE ION, TRYPTOPHANYL-5'AMP, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I27	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, 4-methoxybenzenecarbonitrile, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2A	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, 5-METHOXYBENZIMIDAZOLE, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.35 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2L	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, CHLORZOXAZONE, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2C	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, 4-methoxyaniline, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.07 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023

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