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PDB: 222 results

1XP5
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Structure Of The (Sr)Ca2+-ATPase E2-AlF4- Form
Descriptor: MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, 3ABETA, ...
Authors:Olesen, C, Sorensen, T.L.S, Nielsen, R.C, Moller, J.V, Nissen, P.
Deposit date:2004-10-08
Release date:2005-01-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Dephosphorylation of the Calcium Pump Coupled to Counterion Occlusion
Science, 306, 2004
2C9M
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BU of 2c9m by Molmil
Structure of (SR) Calcium-ATPase in the Ca2E1 state solved in a P1 crystal form.
Descriptor: CALCIUM ION, CHLORIDE ION, POTASSIUM ION, ...
Authors:Lund Jensen, A.-M, Sorensen, T.L.-M, Olesen, C, Moller, J.V, Nissen, P.
Deposit date:2005-12-13
Release date:2006-12-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Modulatory and Catalytic Modes of ATP Binding by the Calcium Pump
Embo J., 25, 2006
7OP1
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BU of 7op1 by Molmil
Cryo-EM structure of P5B-ATPase E2PiAlF/SPM
Descriptor: Cation-transporting ATPase, MAGNESIUM ION, SPERMINE, ...
Authors:Li, P, Gourdon, P.
Deposit date:2021-05-28
Release date:2021-06-30
Last modified:2021-09-01
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure and transport mechanism of P5B-ATPases.
Nat Commun, 12, 2021
7OP8
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Cryo-EM structure of P5B-ATPase E2Pinhibit
Descriptor: BERYLLIUM TRIFLUORIDE ION, Cation-transporting ATPase, MAGNESIUM ION
Authors:Li, P, Gourdon, P.
Deposit date:2021-05-31
Release date:2021-06-30
Last modified:2021-09-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure and transport mechanism of P5B-ATPases.
Nat Commun, 12, 2021
7OP3
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BU of 7op3 by Molmil
Cryo-EM structure of P5B-ATPase E2PiSPM
Descriptor: Cation-transporting ATPase, SPERMINE
Authors:Li, P, Gronberg, C, Wang, K.T, Salustros, N, Gourdon, P.E.
Deposit date:2021-05-28
Release date:2021-06-30
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure and transport mechanism of P5B-ATPases.
Nat Commun, 12, 2021
7OP5
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Cryo-EM structure of P5B-ATPase E2P
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, P5B-ATPase
Authors:Li, P, Gourdon, P.
Deposit date:2021-05-29
Release date:2021-06-30
Last modified:2021-09-01
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure and transport mechanism of P5B-ATPases.
Nat Commun, 12, 2021
5XAA
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BU of 5xaa by Molmil
Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2-ALF-(TG) crystals of P21212 symmetry
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, ...
Authors:Norimatsu, Y, Hasegawa, K, Shimizu, N, Toyoshima, C.
Deposit date:2017-03-11
Release date:2017-05-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Protein-phospholipid interplay revealed with crystals of a calcium pump.
Nature, 545, 2017
5XA8
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Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E1-ALF4-ADP-2CA2+ crystals
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, ...
Authors:Norimatsu, Y, Hasegawa, K, Shimizu, N, Toyoshima, C.
Deposit date:2017-03-11
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Protein-phospholipid interplay revealed with crystals of a calcium pump.
Nature, 545, 2017
5XA9
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Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2-ALF-(TG) crystals of C2 symmetry
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, ...
Authors:Norimatsu, Y, Hasegawa, K, Shimizu, N, Toyoshima, C.
Deposit date:2017-03-11
Release date:2017-06-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Protein-phospholipid interplay revealed with crystals of a calcium pump.
Nature, 545, 2017
5XA7
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BU of 5xa7 by Molmil
Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E1-2CA2+ crystals
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, SODIUM ION, ...
Authors:Norimatsu, Y, Hasegawa, K, Shimizu, N, Toyoshima, C.
Deposit date:2017-03-11
Release date:2017-05-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Protein-phospholipid interplay revealed with crystals of a calcium pump.
Nature, 545, 2017
8D3Y
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BU of 8d3y by Molmil
Human alpha3 Na+/K+-ATPase in its exoplasmic side-open state
Descriptor: FXYD domain-containing ion transport regulator 6, Sodium/potassium-transporting ATPase subunit alpha-3, Sodium/potassium-transporting ATPase subunit beta-1
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
8D3X
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Human alpha3 Na+/K+-ATPase in its K+-occluded state
Descriptor: FXYD domain-containing ion transport regulator 6, Sodium/potassium-transporting ATPase subunit alpha-3, Sodium/potassium-transporting ATPase subunit beta-1, ...
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
8D3U
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BU of 8d3u by Molmil
Human alpha3 Na+/K+-ATPase in its Na+-occluded state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, FXYD domain-containing ion transport regulator 6, Sodium/potassium-transporting ATPase subunit alpha-3, ...
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
8D3W
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BU of 8d3w by Molmil
Human alpha3 Na+/K+-ATPase in its AMPPCP-bound cytoplasmic side-open state
Descriptor: FXYD domain-containing ion transport regulator 6, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Sodium/potassium-transporting ATPase subunit alpha-3, ...
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
8D3V
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BU of 8d3v by Molmil
Human alpha3 Na+/K+-ATPase in its cytoplasmic side-open state
Descriptor: FXYD domain-containing ion transport regulator 6, Sodium/potassium-transporting ATPase subunit alpha-3, Sodium/potassium-transporting ATPase subunit beta-1
Authors:Nguyen, P.T, Bai, X.
Deposit date:2022-06-01
Release date:2022-09-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for gating mechanism of the human sodium-potassium pump.
Nat Commun, 13, 2022
5XAB
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BU of 5xab by Molmil
Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2(TG) crystals
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, OCTANOIC ACID [3S-[3ALPHA, 3ABETA, ...
Authors:Norimatsu, Y, Hasegawa, K, Shimizu, N, Toyoshima, C.
Deposit date:2017-03-11
Release date:2017-06-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Protein-phospholipid interplay revealed with crystals of a calcium pump.
Nature, 545, 2017
8IJM
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BU of 8ijm by Molmil
Cyo-EM structure of K794A non-gastric proton pump in Na+ bound E1AMPPCP state
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Abe, K.
Deposit date:2023-02-27
Release date:2023-08-02
Last modified:2023-08-09
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:An unusual conformation from Na + -sensitive non-gastric proton pump mutants reveals molecular mechanisms of cooperative Na + -binding.
Biochim Biophys Acta Mol Cell Res, 1870, 2023
8IJX
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BU of 8ijx by Molmil
Cryo-EM structure of the gastric proton pump with bound DQ-18
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-[4-[(5-chloranyl-2-phenylmethoxy-phenyl)methoxy]phenyl]-N-methyl-methanamine, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Abe, K, Yokoshima, S, Yoshimori, A.
Deposit date:2023-02-28
Release date:2023-08-30
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (2.08 Å)
Cite:Deep learning driven de novo drug design based on gastric proton pump structures.
Commun Biol, 6, 2023
8IJW
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BU of 8ijw by Molmil
Cryo-EM structure of the gastric proton pump with bound DQ-06
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Abe, K, Yokoshima, S, Yoshimori, A.
Deposit date:2023-02-28
Release date:2023-08-30
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (2.19 Å)
Cite:Deep learning driven de novo drug design based on gastric proton pump structures.
Commun Biol, 6, 2023
8IJV
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BU of 8ijv by Molmil
Cryo-EM structure of the gastric proton pump with bound DQ-02
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[[5-chloranyl-2-(4-chlorophenyl)phenyl]methoxy]-N-methyl-but-2-yn-1-amine, ...
Authors:Abe, K, Yokoshima, S, Yoshimori, A.
Deposit date:2023-02-28
Release date:2023-08-30
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:Deep learning driven de novo drug design based on gastric proton pump structures.
Commun Biol, 6, 2023
8IJL
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BU of 8ijl by Molmil
Cyo-EM structure of wildtype non-gastric proton pump in the presence of Na+, AlF and ADP
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside, ...
Authors:Abe, K.
Deposit date:2023-02-27
Release date:2023-10-18
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:An unusual conformation from Na + -sensitive non-gastric proton pump mutants reveals molecular mechanisms of cooperative Na + -binding.
Biochim Biophys Acta Mol Cell Res, 1870, 2023
5AVR
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Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 1.5 min
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Ogawa, H, Cornelius, F, Hirata, A, Toyoshima, C.
Deposit date:2015-07-01
Release date:2015-09-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Sequential substitution of K(+) bound to Na(+),K(+)-ATPase visualized by X-ray crystallography.
Nat Commun, 6, 2015
5AVZ
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Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 55 min
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Ogawa, H, Cornelius, F, Hirata, A, Toyoshima, C.
Deposit date:2015-07-01
Release date:2015-09-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Sequential substitution of K(+) bound to Na(+),K(+)-ATPase visualized by X-ray crystallography.
Nat Commun, 6, 2015
5AVU
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BU of 5avu by Molmil
Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 7.0 min
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Ogawa, H, Cornelius, F, Hirata, A, Toyoshima, C.
Deposit date:2015-07-01
Release date:2015-09-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Sequential substitution of K(+) bound to Na(+),K(+)-ATPase visualized by X-ray crystallography.
Nat Commun, 6, 2015
5AW2
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Kinetics by X-ray crystallography: Tl+-substitution of bound K+ in the E2.MgF42-.2K+ crystal after 85 min
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Ogawa, H, Cornelius, F, Hirata, A, Toyoshima, C.
Deposit date:2015-07-01
Release date:2015-09-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Sequential substitution of K(+) bound to Na(+),K(+)-ATPase visualized by X-ray crystallography.
Nat Commun, 6, 2015

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