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PDB: 588 results

8I1E
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BU of 8i1e by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 8.0
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I19
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BU of 8i19 by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 8.0
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I18
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BU of 8i18 by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGTP at pH 7.7
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SODIUM ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1H
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BU of 8i1h by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 9.7
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, SODIUM ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1J
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BU of 8i1j by Molmil
Crystal structure of human MTH1(G2K/D120N mutant) in complex with 2-oxo-dATP at pH 9.7
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I8T
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BU of 8i8t by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dAMP and Mn2+
Descriptor: 2'-DEOXYISOGUANINE-5'-MONOPHOSPHATE, 7,8-dihydro-8-oxoguanine triphosphatase, MANGANESE (II) ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-02-05
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1F
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BU of 8i1f by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 8.6
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I8S
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BU of 8i8s by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 8-oxo-dGMP and Mn2+
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-02-05
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
8I1G
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BU of 8i1g by Molmil
Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 9.1
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, GLYCEROL, SODIUM ION, ...
Authors:Nakamura, T, Yamagata, Y.
Deposit date:2023-01-13
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition.
Febs Lett., 597, 2023
5ZRG
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BU of 5zrg by Molmil
M. smegmatis antimutator protein MutT2 in complex with dCMP
Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, Putative mutator protein MutT2/NUDIX hydrolase
Authors:Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M.
Deposit date:2018-04-24
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2.
J.Struct.Biol., 204, 2018
3E57
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BU of 3e57 by Molmil
Crystal structure of Tm1382, a putative Nudix hydrolase
Descriptor: uncharacterized protein Tm1382
Authors:Choi, W, Cooper, D.R, Derewenda, Z.S, Integrated Center for Structure and Function Innovation (ISFI)
Deposit date:2008-08-13
Release date:2008-09-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of Tm1382, a putative Nudix hydrolase
To be Published
6AA4
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BU of 6aa4 by Molmil
Crystal structure of MTH1 in complex with alpha-mangostin (cocktail No. 9)
Descriptor: 1,3,6-trihydroxy-7-methoxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION, ...
Authors:Yokoyama, T, Kitakami, R, Mizuguchi, M.
Deposit date:2018-07-17
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of a new class of MTH1 inhibitor by X-ray crystallographic screening.
Eur J Med Chem, 167, 2019
5ZRP
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BU of 5zrp by Molmil
M. smegmatis antimutator protein MutT2 form 3
Descriptor: Putative mutator protein MutT2/NUDIX hydrolase
Authors:Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M.
Deposit date:2018-04-24
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2.
J.Struct.Biol., 204, 2018
5ZRK
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BU of 5zrk by Molmil
M. smegmatis antimutator protein MutT2 in complex with dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, Putative mutator protein MutT2/NUDIX hydrolase
Authors:Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M.
Deposit date:2018-04-24
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2.
J.Struct.Biol., 204, 2018
6AA3
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BU of 6aa3 by Molmil
Crystal structure of MTH1 in apo form (cocktail No. 1)
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION, ZINC ION
Authors:Yokoyama, T, Kitakami, R, Mizuguchi, M.
Deposit date:2018-07-17
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Discovery of a new class of MTH1 inhibitor by X-ray crystallographic screening.
Eur J Med Chem, 167, 2019
5ZRI
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BU of 5zri by Molmil
M. smegmatis antimutator protein MutT2 in complex with 5m-dCMP
Descriptor: MAGNESIUM ION, Putative mutator protein MutT2/NUDIX hydrolase, [(2R,3S,5R)-5-(4-azanyl-5-methyl-pyrimidin-1-ium-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Authors:Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M.
Deposit date:2018-04-24
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2.
J.Struct.Biol., 204, 2018
5ZRL
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BU of 5zrl by Molmil
M. smegmatis antimutator protein MutT2 in complex with CDP
Descriptor: 1,2-ETHANEDIOL, CYTIDINE-5'-DIPHOSPHATE, Putative mutator protein MutT2/NUDIX hydrolase
Authors:Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M.
Deposit date:2018-04-24
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2.
J.Struct.Biol., 204, 2018
5ZRC
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BU of 5zrc by Molmil
Structural insights into the catalysis mechanism of M. smegmatis antimutator protein MutT2
Descriptor: 1,2-ETHANEDIOL, Putative mutator protein MutT2/NUDIX hydrolase
Authors:Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M.
Deposit date:2018-04-24
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2.
J.Struct.Biol., 204, 2018
5ZRH
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BU of 5zrh by Molmil
M. smegmatis antimutator protein MutT2 in complex with CMP
Descriptor: 1,2-ETHANEDIOL, CYTIDINE-5'-MONOPHOSPHATE, Putative mutator protein MutT2/NUDIX hydrolase
Authors:Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M.
Deposit date:2018-04-24
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2.
J.Struct.Biol., 204, 2018
3FK9
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BU of 3fk9 by Molmil
Crystal structure of mMutator MutT protein from Bacillus halodurans
Descriptor: Mutator MutT protein
Authors:Bonanno, J.B, Freeman, J, Bain, K.T, Hu, S, Romero, R, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-12-16
Release date:2009-01-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of mMutator MutT protein from Bacillus halodurans
To be Published
3FCM
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BU of 3fcm by Molmil
Crystal structure of a NUDIX hydrolase from Clostridium perfringens
Descriptor: Hydrolase, NUDIX family, MANGANESE (II) ION
Authors:Palani, K, Burley, S.K, Swaninathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-11-21
Release date:2008-12-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a NUDIX hydrolase from Clostridium perfringens
To be Published
5ZRO
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BU of 5zro by Molmil
M. smegmatis antimutator protein MutT2 in complex with 5mdCTP
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXY-5-METHYLCYTIDINE 5'-(TETRAHYDROGEN TRIPHOSPHATE), Putative mutator protein MutT2/NUDIX hydrolase
Authors:Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M.
Deposit date:2018-04-24
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2.
J.Struct.Biol., 204, 2018
6AA5
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BU of 6aa5 by Molmil
Crystal structure of MTH1 in complex with 3-isomangostin
Descriptor: 5,9-dihydroxy-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-en-1-yl)-3,4-dihydro-2H,6H-pyrano[3,2-b]xanthen-6-one, 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION, ...
Authors:Yokoyama, T, Kitakami, R, Mizuguchi, M.
Deposit date:2018-07-17
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Discovery of a new class of MTH1 inhibitor by X-ray crystallographic screening.
Eur J Med Chem, 167, 2019
3F13
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BU of 3f13 by Molmil
Crystal structure of putative nudix hydrolase family member from Chromobacterium violaceum
Descriptor: putative nudix hydrolase family member
Authors:Bonanno, J.B, Freeman, J, Bain, K.T, Do, J, Romero, R, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-10-27
Release date:2008-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of putative nudix hydrolase family member from Chromobacterium violaceum
To be Published
3F6A
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BU of 3f6a by Molmil
Crystal structure of a hydrolase, NUDIX family from Clostridium perfringens
Descriptor: Hydrolase, NUDIX family
Authors:Palani, K, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-11-05
Release date:2008-11-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of a hydrolase, NUDIX family from Clostridium perfringens
To be Published

222415

PDB entries from 2024-07-10

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