Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1466 results

1Q5W
DownloadVisualize
BU of 1q5w by Molmil
Ubiquitin Recognition by Npl4 Zinc-Fingers
Descriptor: Ubiquitin, ZINC ION, homolog of yeast nuclear protein localization 4
Authors:Alam, S.L, Sun, J, Payne, M, Welch, B.D, Blake, B.K, Davis, D.R, Meyer, H.H, Emr, S.D, Sundquist, W.I.
Deposit date:2003-08-11
Release date:2004-03-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Ubiquitin interactions of NZF zinc fingers.
Embo J., 23, 2004
4GU2
DownloadVisualize
BU of 4gu2 by Molmil
Crystal structure of ubiquitin from Entamoeba histolytica to 1.35 Angstrom
Descriptor: Ubiquitin
Authors:Bosch, D.E, Siderovski, D.P.
Deposit date:2012-08-29
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica.
J.Biol.Chem., 288, 2013
4GOC
DownloadVisualize
BU of 4goc by Molmil
Crystal structure of the Get5 ubiquitin-like domain
Descriptor: Golgi to ER traffic protein 5
Authors:Chartron, J.W, VanderVelde, D.G, Clemons Jr, W.M.
Deposit date:2012-08-19
Release date:2012-11-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of the Sgt2/SGTA Dimerization Domain with the Get5/UBL4A UBL Domain Reveal an Interaction that Forms a Conserved Dynamic Interface.
Cell Rep, 2, 2012
4GSW
DownloadVisualize
BU of 4gsw by Molmil
Crystal structure of ubiquitin from Entamoeba histolytica to 2.15 Angstrom
Descriptor: SULFATE ION, Ubiquitin
Authors:Bosch, D.E, Siderovski, D.P.
Deposit date:2012-08-28
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica.
J.Biol.Chem., 288, 2013
4HK2
DownloadVisualize
BU of 4hk2 by Molmil
U7Ub25.2540
Descriptor: SULFATE ION, Ubiquitin
Authors:Murray, J.M, Rouge, L.
Deposit date:2012-10-14
Release date:2012-11-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization
to be published
4HJK
DownloadVisualize
BU of 4hjk by Molmil
U7Ub7 Disulfide variant
Descriptor: PHOSPHATE ION, Ubiquitin
Authors:Murray, J.M, Rouge, L.
Deposit date:2012-10-12
Release date:2012-11-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.784 Å)
Cite:Potent and selective inhibitors of USP7/HAUSP activity by protein conformational stabilization
to be published
4I6N
DownloadVisualize
BU of 4i6n by Molmil
Crystal structure of Trichinella spiralis UCH37 catalytic domain bound to Ubiquitin vinyl methyl ester
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, METHYL 4-AMINOBUTANOATE, SODIUM ION, ...
Authors:Morrow, M.E, Ronau, J.A, White, R.R, Artavanis-Tsakonas, K, Das, C.
Deposit date:2012-11-29
Release date:2013-05-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C-Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity.
Biochemistry, 52, 2013
4IG7
DownloadVisualize
BU of 4ig7 by Molmil
Crystal structure of Trichinella spiralis UCH37 bound to Ubiquitin vinyl methyl ester
Descriptor: METHYL 4-AMINOBUTANOATE, Ubiquitin, Ubiquitin C-terminal hydrolase 37
Authors:Das, C, Kim, M.I, Morrow, M.E.
Deposit date:2012-12-16
Release date:2013-05-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Stabilization of an Unusual Salt Bridge in Ubiquitin by the Extra C‑Terminal Domain of the Proteasome-Associated Deubiquitinase UCH37 as a Mechanism of Its Exo Specificity.
Biochemistry, 52, 2013
7CAP
DownloadVisualize
BU of 7cap by Molmil
Cyclic Lys48-linked triubiquitin
Descriptor: Ubiquitin, ZINC ION
Authors:Hiranyakorn, M, Yanaka, S, Satoh, T, Wilasri, T, Jityuti, B, Yagi-Utsumi, T, Kato, K.
Deposit date:2020-06-09
Release date:2020-08-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains.
Int J Mol Sci, 21, 2020
1UD7
DownloadVisualize
BU of 1ud7 by Molmil
SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF UBIQUITIN, 1D7
Descriptor: PROTEIN (UBIQUITIN CORE MUTANT 1D7)
Authors:Johnson, E.C, Lazar, G.A, Desjarlais, J.R, Handel, T.M.
Deposit date:1999-04-07
Release date:1999-05-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin.
Structure Fold.Des., 7, 1999
1TTN
DownloadVisualize
BU of 1ttn by Molmil
Solution structure of the ubiquitin-like domain of human DC-UBP from dendritic cells
Descriptor: dendritic cell-derived ubiquitin-like protein
Authors:Hu, H.Y.
Deposit date:2004-06-23
Release date:2005-07-05
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the ubiquitin-like domain of human DC-UbP from dendritic cells
Protein Sci., 14, 2005
1UBI
DownloadVisualize
BU of 1ubi by Molmil
SYNTHETIC STRUCTURAL AND BIOLOGICAL STUDIES OF THE UBIQUITIN SYSTEM. PART 1
Descriptor: UBIQUITIN
Authors:Alexeev, D, Bury, S.M, Turner, M.A, Ogunjobi, O.M, Muir, T.W, Ramage, R, Sawyer, L.
Deposit date:1994-02-03
Release date:1994-05-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthetic, structural and biological studies of the ubiquitin system: the total chemical synthesis of ubiquitin.
Biochem.J., 299, 1994
1UBQ
DownloadVisualize
BU of 1ubq by Molmil
STRUCTURE OF UBIQUITIN REFINED AT 1.8 ANGSTROMS RESOLUTION
Descriptor: UBIQUITIN
Authors:Vijay-Kumar, S, Bugg, C.E, Cook, W.J.
Deposit date:1987-01-02
Release date:1987-04-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of ubiquitin refined at 1.8 A resolution.
J.Mol.Biol., 194, 1987
3M3J
DownloadVisualize
BU of 3m3j by Molmil
A new crystal form of Lys48-linked diubiquitin
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Ubiquitin
Authors:Trempe, J.F, Brown, N.R, Noble, M.E.M, Endicott, J.A.
Deposit date:2010-03-09
Release date:2010-03-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A new crystal form of Lys48-linked diubiquitin.
Acta Crystallogr.,Sect.F, 66, 2010
1V80
DownloadVisualize
BU of 1v80 by Molmil
Solution structures of ubiquitin at 30 bar and 3 kbar
Descriptor: Ubiquitin/60s ribosomal protein L40 fusion
Authors:Kitahara, R, Yokoyama, S, Akasaka, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-27
Release date:2005-02-15
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR snapshots of a fluctuating protein structure: ubiquitin at 30 bar-3 kbar.
J.Mol.Biol., 347, 2005
3NS8
DownloadVisualize
BU of 3ns8 by Molmil
Crystal structure of an open conformation of Lys48-linked diubiquitin at pH 7.5
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Ubiquitin
Authors:Zhang, D, LaRonde-LeBlanc, N, Fushman, D.
Deposit date:2010-07-01
Release date:2011-07-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.707 Å)
Cite:Structural and biochemical studies of the open state of Lys48-linked diubiquitin.
Biochim.Biophys.Acta, 1823, 2012
1SIF
DownloadVisualize
BU of 1sif by Molmil
Crystal structure of a multiple hydrophobic core mutant of ubiquitin
Descriptor: ubiquitin
Authors:Benitez-Cardoza, C.G, Stott, K, Hirshberg, M, Went, H.M, Woolfson, D.N, Jackson, S.E.
Deposit date:2004-02-29
Release date:2004-07-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Exploring sequence/folding space: folding studies on multiple hydrophobic core mutants of ubiquitin
Biochemistry, 43, 2004
1UH6
DownloadVisualize
BU of 1uh6 by Molmil
Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
Descriptor: ubiquitin-like 5
Authors:Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-25
Release date:2003-12-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
To be Published
1V81
DownloadVisualize
BU of 1v81 by Molmil
Solution structures of ubiquitin at 30 bar and 3 kbar
Descriptor: Ubiquitin/60s ribosomal protein L40 fusion
Authors:Kitahara, R, Yokoyama, S, Akasaka, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-27
Release date:2005-02-15
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR snapshots of a fluctuating protein structure: ubiquitin at 30 bar-3 kbar.
J.Mol.Biol., 347, 2005
3OJ3
DownloadVisualize
BU of 3oj3 by Molmil
Crystal structure of the A20 ZnF4 and ubiquitin complex
Descriptor: Tumor necrosis factor alpha-induced protein 3, Ubiquitin, ZINC ION
Authors:Bosanac, I, Hymowitz, S.G.
Deposit date:2010-08-20
Release date:2010-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ubiquitin Binding to A20 ZnF4 Is Required for Modulation of NF-KB Signaling
Mol.Cell, 40, 2010
1V5T
DownloadVisualize
BU of 1v5t by Molmil
Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 8430435I17Rik Protein
Descriptor: 8430435I17Rik Protein
Authors:Zhao, C, Kigawa, T, Tochio, N, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-25
Release date:2004-05-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 8430435I17Rik Protein
To be Published
1V86
DownloadVisualize
BU of 1v86 by Molmil
Solution structure of the ubiquitin domain from mouse D7Wsu128e protein
Descriptor: DNA segment, Chr 7, Wayne State University 128, ...
Authors:Tomizawa, T, Kigawa, T, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-29
Release date:2004-06-29
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the ubiquitin domain from mouse D7Wsu128e protein
To be Published
3NOB
DownloadVisualize
BU of 3nob by Molmil
Structure of K11-linked di-ubiquitin
Descriptor: SULFATE ION, Ubiquitin
Authors:Dong, K.C, Matsumoto, M.L, Hymowitz, S.G.
Deposit date:2010-06-25
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:K11-Linked Polyubiquitination in Cell Cycle Control Revealed by a K11 Linkage-Specific Antibody.
Mol.Cell, 39, 2010
1TBE
DownloadVisualize
BU of 1tbe by Molmil
STRUCTURE OF TETRAUBIQUITIN SHOWS HOW MULTIUBIQUITIN CHAINS CAN BE FORMED
Descriptor: TETRAUBIQUITIN
Authors:Cook, W.J, Jeffrey, L.C, Kasperek, E, Pickart, C.M.
Deposit date:1993-10-14
Release date:1994-01-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of tetraubiquitin shows how multiubiquitin chains can be formed.
J.Mol.Biol., 236, 1994
3ONS
DownloadVisualize
BU of 3ons by Molmil
Crystal structure of Human Ubiquitin in a new crystal form
Descriptor: Ubiquitin
Authors:Amodeo, G.A, Huang, K.Y, Mcdermott, A.E, Tong, L.
Deposit date:2010-08-30
Release date:2011-02-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of human ubiquitin in 2-methyl-2,4-pentanediol: a new conformational switch.
Protein Sci., 20, 2011

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon