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PDB: 47 results

3IUC
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BU of 3iuc by Molmil
Crystal structure of the human 70kDa heat shock protein 5 (BiP/GRP78) ATPase domain in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, Heat shock 70kDa protein 5 (Glucose-regulated protein, ...
Authors:Wisniewska, M, Karlberg, T, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Kallas, A, Kotyenova, T, Kotzch, A, Kraulis, P, Markova, N, Moche, M, Nielsen, T.K, Nordlund, P, Nyman, T, Persson, C, Roos, A, Schutz, P, Siponen, M.I, Svensson, L, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Wahlberg, E, Weigelt, J, Welin, M, Schuler, H, Structural Genomics Consortium (SGC)
Deposit date:2009-08-31
Release date:2009-09-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of the ATPase domains of four human Hsp70 isoforms: HSPA1L/Hsp70-hom, HSPA2/Hsp70-2, HSPA6/Hsp70B', and HSPA5/BiP/GRP78
Plos One, 5, 2010
4MJS
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crystal structure of a PB1 complex
Descriptor: 1,2-ETHANEDIOL, Protein kinase C zeta type, Sequestosome-1
Authors:Ren, J, Wang, Z.X, Wu, J.W.
Deposit date:2013-09-04
Release date:2014-08-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical insights into the homotypic PB1-PB1 complex between PKC zeta and p62
Sci China Life Sci, 57, 2014
5YPA
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p62/SQSTM1 ZZ domain with Lys-peptide
Descriptor: 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION
Authors:Kwon, D.H, Kim, L, Song, H.K.
Deposit date:2017-11-01
Release date:2018-08-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter.
Nat Commun, 9, 2018
6DFO
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BU of 6dfo by Molmil
Crystal structure of human GRP78 in complex with 8-bromoadenosine
Descriptor: 8-bromoadenosine, Endoplasmic reticulum chaperone BiP
Authors:Ferrie, R.P, Chen, Y, Antoshchenko, T, Cooney, O.M, Huang, Y, Park, H.W.
Deposit date:2018-05-15
Release date:2019-05-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Crystal structure of human GRP78 in complex with 8-bromoadenosine
To be Published
5E85
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BU of 5e85 by Molmil
isolated SBD of BiP
Descriptor: 78 kDa glucose-regulated protein, SULFATE ION
Authors:Liu, Q, Yang, J, Nune, M, Zong, Y, Zhou, L.
Deposit date:2015-10-13
Release date:2015-12-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Close and Allosteric Opening of the Polypeptide-Binding Site in a Human Hsp70 Chaperone BiP.
Structure, 23, 2015
6ZMD
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BU of 6zmd by Molmil
Crystal structure of HYPE covalently tethered to BiP bound to AMP-PNP
Descriptor: Endoplasmic reticulum chaperone BiP, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Fauser, J, Gulen, B, Pett, C, Hedberg, C, Itzen, A, Pogenberg, V.
Deposit date:2020-07-02
Release date:2021-04-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Specificity of AMPylation of the human chaperone BiP is mediated by TPR motifs of FICD.
Nat Commun, 12, 2021
5E86
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isolated SBD of BiP with loop34 modification
Descriptor: 78 kDa glucose-regulated protein
Authors:Liu, Q, Yang, J, Nune, M, Zong, Y, Zhou, L.
Deposit date:2015-10-13
Release date:2015-12-30
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.681 Å)
Cite:Close and Allosteric Opening of the Polypeptide-Binding Site in a Human Hsp70 Chaperone BiP.
Structure, 23, 2015
6KHZ
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p62/SQSTM1 ZZ domain with Gly-peptide
Descriptor: Sequestosome-1, ZINC ION
Authors:Kwon, D.H, Kim, L, Song, H.K.
Deposit date:2019-07-16
Release date:2020-01-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
5YPE
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BU of 5ype by Molmil
p62/SQSTM1 ZZ domain with Tyr-peptide
Descriptor: 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION
Authors:Kwon, D.H, Kim, L, Song, H.K.
Deposit date:2017-11-01
Release date:2018-08-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.851 Å)
Cite:Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter.
Nat Commun, 9, 2018
5YPB
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BU of 5ypb by Molmil
p62/SQSTM1 ZZ domain with His-peptide
Descriptor: 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION
Authors:Kwon, D.H, Kim, L, Song, H.K.
Deposit date:2017-11-01
Release date:2018-08-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter.
Nat Commun, 9, 2018
5YPF
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BU of 5ypf by Molmil
p62/SQSTM1 ZZ domain with Trp-peptide
Descriptor: 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION
Authors:Kwon, D.H, Kim, L, Song, H.K.
Deposit date:2017-11-01
Release date:2018-08-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.951 Å)
Cite:Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter.
Nat Commun, 9, 2018
5E84
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BU of 5e84 by Molmil
ATP-bound state of BiP
Descriptor: 78 kDa glucose-regulated protein, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Liu, Q, Yang, J, Nune, M, Zong, Y, Zhou, L.
Deposit date:2015-10-13
Release date:2016-01-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Close and Allosteric Opening of the Polypeptide-Binding Site in a Human Hsp70 Chaperone BiP.
Structure, 23, 2015
6JM4
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BU of 6jm4 by Molmil
The crystal structure of PB1 homo-dimer of human P62/SQSTM1
Descriptor: Sequestosome-1
Authors:Shin, H.C, Lim, D, Kim, S.J.
Deposit date:2019-03-07
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.20014834 Å)
Cite:Oligomer Model of PB1 Domain of p62/SQSTM1 Based on Crystal Structure of Homo-Dimer and Calculation of Helical Characteristics.
Mol.Cells, 42, 2019
6TGY
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BU of 6tgy by Molmil
Cryo-EM structure of p62-PB1 filament (L-type)
Descriptor: Sequestosome-1
Authors:Jakobi, A.J, Huber, S.T, Mortensen, S.A, Sachse, C.
Deposit date:2019-11-18
Release date:2020-02-12
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis of p62/SQSTM1 helical filaments and their role in cellular cargo uptake.
Nat Commun, 11, 2020
6TH3
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BU of 6th3 by Molmil
Cryo-EM structure of p62-PB1 filament (S-type)
Descriptor: Sequestosome-1
Authors:Jakobi, A.J, Huber, S.T, Mortensen, S.A, Sachse, C.
Deposit date:2019-11-18
Release date:2020-02-12
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of p62/SQSTM1 helical filaments and their role in cellular cargo uptake.
Nat Commun, 11, 2020
4UF9
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BU of 4uf9 by Molmil
Electron cryo-microscopy structure of PB1-p62 type T filaments
Descriptor: SEQUESTOSOME-1
Authors:Ciuffa, R, Lamark, T, Tarafder, A, Guesdon, A, Rybina, S, Hagen, W.J.H, Johansen, T, Sachse, C.
Deposit date:2015-03-15
Release date:2015-05-13
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (10.3 Å)
Cite:The Selective Autophagy Receptor P62 Forms a Flexible Filamentous Helical Scaffold.
Cell Rep., 11, 2015
4UF8
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BU of 4uf8 by Molmil
Electron cryo-microscopy structure of PB1-p62 filaments
Descriptor: SEQUESTOSOME-1
Authors:Ciuffa, R, Lamark, T, Tarafder, A, Guesdon, A, Rybina, S, Hagen, W.J.H, Johansen, T, Sachse, C.
Deposit date:2015-03-15
Release date:2015-05-13
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (10.9 Å)
Cite:The Selective Autophagy Receptor P62 Forms a Flexible Filamentous Helical Scaffold.
Cell Rep., 11, 2015
2K0B
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BU of 2k0b by Molmil
NMR structure of the UBA domain of p62 (SQSTM1)
Descriptor: Sequestosome-1
Authors:Long, J.E, Ciani, B, Gallagher, T.R.A, Cavey, J.R, Sheppard, P.W, Layfield, R, Searle, M.S.
Deposit date:2008-01-31
Release date:2008-02-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Conformation and dynamics of the three-helix bundle UBA domain of p62 from experiment and simulation.
Proteins, 71, 2007
1Q02
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BU of 1q02 by Molmil
NMR structure of the UBA domain of p62 (SQSTM1)
Descriptor: sequestosome 1
Authors:Ciani, B, Layfield, R, Cavey, J.R, Sheppard, P.W, Searle, M.S.
Deposit date:2003-07-15
Release date:2003-09-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the Ubiquitin-associated Domain of p62 (SQSTM1) and Implications for Mutations That Cause Paget's Disease of Bone
J.Biol.Chem., 278, 2003
2JY7
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BU of 2jy7 by Molmil
NMR structure of the ubiquitin associated (UBA) domain of p62 (SQSTM1). RDC refined
Descriptor: Ubiquitin-binding protein p62
Authors:Long, J.E, Layfield, R, Searle, M.S.
Deposit date:2007-12-07
Release date:2007-12-18
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Ubiquitin Recognition by the Ubiquitin-associated Domain of p62 Involves a Novel Conformational Switch
J.Biol.Chem., 283, 2008
2JY8
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NMR structure of the ubiquitin associated (UBA) domain of p62 (SQSTM1) in complex with ubiquitin. RDC refined
Descriptor: Ubiquitin-binding protein p62
Authors:Long, J.E, Layfield, R, Searle, M.S.
Deposit date:2007-12-07
Release date:2007-12-18
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Ubiquitin Recognition by the Ubiquitin-associated Domain of p62 Involves a Novel Conformational Switch
J.Biol.Chem., 283, 2008
2KNV
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BU of 2knv by Molmil
NMR dimer structure of the UBA domain of p62 (SQSTM1)
Descriptor: Sequestosome-1
Authors:Long, J.E, Searle, M.S.
Deposit date:2009-09-04
Release date:2009-12-15
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Dimerisation of the UBA Domain of p62 Inhibits Ubiquitin Binding and Regulates NF-kappaB Signalling
J.Mol.Biol., 2009
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