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PDB: 676 results

6J0C
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Cryo-EM Structure of an Extracellular Contractile Injection System, PVC sheath complex in contracted state
Descriptor: Pvc2
Authors:Jiang, F, Li, N, Wang, X, Cheng, J, Huang, Y, Yang, Y, Yang, J, Cai, B, Wang, Y, Jin, Q, Gao, N.
Deposit date:2018-12-23
Release date:2019-04-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM Structure and Assembly of an Extracellular Contractile Injection System.
Cell, 177, 2019
6IQW
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BU of 6iqw by Molmil
Cryo-EM structure of Csm effector complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Csm1, Csm2, ...
Authors:Huo, Y, Li, T, Wang, N, Dong, Q, Wang, X, Jiang, T.
Deposit date:2018-11-09
Release date:2019-01-16
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Cryo-EM structure of Type III-A CRISPR effector complex.
Cell Res., 28, 2018
7ENA
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BU of 7ena by Molmil
TFIID-based PIC-Mediator holo-complex in pre-assembled state (pre-hPIC-MED)
Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
Authors:Chen, X, Qi, Y, Wang, X, Wu, Z, Yin, X, Li, J, Liu, W, Xu, Y.
Deposit date:2021-04-16
Release date:2021-05-26
Last modified:2021-06-16
Method:ELECTRON MICROSCOPY (4.07 Å)
Cite:Structures of the human Mediator and Mediator-bound preinitiation complex.
Science, 372, 2021
7ENC
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BU of 7enc by Molmil
TFIID-based PIC-Mediator holo-complex in fully-assembled state (hPIC-MED)
Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
Authors:Chen, X, Qi, Y, Wang, X, Wu, Z, Yin, X, Li, J, Liu, W, Xu, Y.
Deposit date:2021-04-16
Release date:2021-05-26
Last modified:2021-06-16
Method:ELECTRON MICROSCOPY (4.13 Å)
Cite:Structures of the human Mediator and Mediator-bound preinitiation complex.
Science, 372, 2021
8HTD
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BU of 8htd by Molmil
Crystal structure of an effector from Chromobacterium violaceum in complex with ubiquitin
Descriptor: NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.848 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTC
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BU of 8htc by Molmil
Crystal structure of a SeMet-labeled effector from Chromobacterium violaceum in complex with Ubiquitin
Descriptor: NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin-40S ribosomal protein S27a (Fragment)
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTE
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BU of 8hte by Molmil
Crystal structure of an effector mutant in complex with ubiquitin
Descriptor: GLYCEROL, NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE, ...
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.307 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTF
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BU of 8htf by Molmil
Crystal structure of an effector in complex with ubiquitin
Descriptor: NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Ubiquitin-40S ribosomal protein S27a (Fragment)
Authors:Tan, J, Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2022-12-21
Release date:2023-11-22
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
5Y56
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BU of 5y56 by Molmil
Fc mutant (K392D/K409D/D399K)
Descriptor: Immunoglobulin gamma-1 heavy chain, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[beta-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Ye, S, Xu, T, Yu, J, Wang, X, Xu, T, Jin, Q, Duan, J, Wu, J, Wu, H.
Deposit date:2017-08-07
Release date:2017-09-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.653 Å)
Cite:A rational approach to enhancing antibody Fc homodimer formation for robust production of antibody mixture in a single cell line
J. Biol. Chem., 292, 2017
5Y18
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BU of 5y18 by Molmil
Crystal structure of DAXX helical bundle domain in complex with ATRX
Descriptor: Death domain-associated protein 6, Transcriptional regulator ATRX
Authors:Chen, Y, Wang, X.
Deposit date:2017-07-19
Release date:2018-05-30
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Structural basis for DAXX interaction with ATRX
Protein Cell, 8, 2017
6L1H
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BU of 6l1h by Molmil
Crystal structure of light-dependent protochlorophyllide oxidoreductase from Thermosynechococcus elongatus
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-protochlorophyllide oxidoreductase
Authors:Dong, C, Wang, X, Liu, L.
Deposit date:2019-09-29
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.409 Å)
Cite:Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase.
Proc.Natl.Acad.Sci.USA, 117, 2020
6L1G
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BU of 6l1g by Molmil
Crystal structure of light-dependent protochlorophyllide oxidoreductase from Synechocystis sp. PCC 6803
Descriptor: Light-dependent protochlorophyllide reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION
Authors:Dong, C, Wang, X, Liu, L.
Deposit date:2019-09-29
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase.
Proc.Natl.Acad.Sci.USA, 117, 2020
6IJA
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BU of 6ija by Molmil
Crystal Structure of Arabidopsis thaliana UGT89C1 complexed with UDP-L-rhamnose
Descriptor: UDP-glycosyltransferase 89C1, [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate
Authors:Zong, G, Wang, X.
Deposit date:2018-10-09
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.214 Å)
Cite:Crystal structures of rhamnosyltransferase UGT89C1 from Arabidopsis thaliana reveal the molecular basis of sugar donor specificity for UDP-beta-l-rhamnose and rhamnosylation mechanism.
Plant J., 99, 2019
6IJD
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BU of 6ijd by Molmil
Crystal Structure of Arabidopsis thaliana UGT89C1 complexed with quercetin
Descriptor: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, UDP-glycosyltransferase 89C1
Authors:Zong, G, Wang, X.
Deposit date:2018-10-09
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.206 Å)
Cite:Crystal structures of rhamnosyltransferase UGT89C1 from Arabidopsis thaliana reveal the molecular basis of sugar donor specificity for UDP-beta-l-rhamnose and rhamnosylation mechanism.
Plant J., 99, 2019
6LQD
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BU of 6lqd by Molmil
Structure of Enterovirus 71 in complex with NLD-22
Descriptor: 1-(2-azanylpyridin-4-yl)-3-[5-[4-(5-methyl-1,2,4-oxadiazol-3-yl)phenoxy]pentyl]imidazolidin-2-one, Capsid protein VP1, Capsid protein VP2, ...
Authors:Zhang, M, Sun, Y, Wang, X, Guo, Y, Rao, Z.
Deposit date:2020-01-13
Release date:2020-03-11
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.264 Å)
Cite:Design, Synthesis, and Evaluation of Novel Enterovirus 71 Inhibitors as Therapeutic Drug Leads for the Treatment of Human Hand, Foot, and Mouth Disease.
J.Med.Chem., 63, 2020
2YG1
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BU of 2yg1 by Molmil
APO STRUCTURE OF CELLOBIOHYDROLASE 1 (CEL7A) FROM HETEROBASIDION ANNOSUM
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CELLULOSE 1,4-BETA-CELLOBIOSIDASE, MAGNESIUM ION
Authors:Haddad-Momeni, M, Hansson, H, Mikkelsen, N.E, Wang, X, Svedberg, J, Sandgren, M, Stahlberg, J.
Deposit date:2011-04-11
Release date:2012-04-25
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural, Biochemical, and Computational Characterization of the Glycoside Hydrolase Family 7 Cellobiohydrolase of the Tree-Killing Fungus Heterobasidion Irregulare.
J.Biol.Chem., 288, 2013
2XSP
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BU of 2xsp by Molmil
Structure of Cellobiohydrolase 1 (Cel7A) from Heterobasidion annosum
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CELLULOSE 1,4-BETA-CELLOBIOSIDASE, ...
Authors:Haddad-momeni, M, Hansson, H, Mikkelsen, N.E, Wang, X, Svedberg, J, Sandgren, M, Stahlberg, J.
Deposit date:2010-09-29
Release date:2011-10-12
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural, Biochemical, and Computational Characterization of the Glycoside Hydrolase Family 7 Cellobiohydrolase of the Tree-Killing Fungus Heterobasidion Irregulare.
J.Biol.Chem., 288, 2013
6L1W
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BU of 6l1w by Molmil
Zinc-finger Antiviral Protein (ZAP) bound to RNA
Descriptor: RNA (5'-R(*CP*GP*UP*CP*GP*U)-3'), ZINC ION, Zinc finger CCCH-type antiviral protein 1
Authors:Luo, X, Wang, X, Gao, Y, Zhu, J, Liu, S, Gao, G, Gao, P.
Deposit date:2019-09-30
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Molecular Mechanism of RNA Recognition by Zinc-Finger Antiviral Protein.
Cell Rep, 30, 2020
2ZNV
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BU of 2znv by Molmil
Crystal structure of human AMSH-LP DUB domain in complex with Lys63-linked ubiquitin dimer
Descriptor: 1,2-ETHANEDIOL, AMSH-like protease, Ubiquitin, ...
Authors:Sato, Y, Azusa, Y, Yamagata, A, Mimura, H, Wang, X, Yamashita, M, Ookata, K, Nureki, O, Iwai, K, Komada, M, Fukai, S.
Deposit date:2008-05-01
Release date:2008-09-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains
Nature, 455, 2008
7BV1
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BU of 7bv1 by Molmil
Cryo-EM structure of the apo nsp12-nsp7-nsp8 complex
Descriptor: Non-structural protein 7, Non-structural protein 8, RNA-directed RNA polymerase, ...
Authors:Yin, W, Mao, C, Luan, X, Shen, D, Shen, Q, Su, H, Wang, X, Zhou, F, Zhao, W, Gao, M, Chang, S, Xie, Y.C, Tian, G, Jiang, H.W, Tao, S.C, Shen, J, Jiang, Y, Jiang, H, Xu, Y, Zhang, S, Zhang, Y, Xu, H.E.
Deposit date:2020-04-09
Release date:2020-04-22
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis for inhibition of the RNA-dependent RNA polymerase from SARS-CoV-2 by remdesivir.
Science, 368, 2020
7BV2
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BU of 7bv2 by Molmil
The nsp12-nsp7-nsp8 complex bound to the template-primer RNA and triphosphate form of Remdesivir(RTP)
Descriptor: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ...
Authors:Yin, W, Mao, C, Luan, X, Shen, D, Shen, Q, Su, H, Wang, X, Zhou, F, Zhao, W, Gao, M, Chang, S, Xie, Y.C, Tian, G, Jiang, H.W, Tao, S.C, Shen, J, Jiang, Y, Jiang, H, Xu, Y, Zhang, S, Zhang, Y, Xu, H.E.
Deposit date:2020-04-09
Release date:2020-04-22
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis for inhibition of the RNA-dependent RNA polymerase from SARS-CoV-2 by remdesivir.
Science, 368, 2020
2ZNR
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BU of 2znr by Molmil
Crystal structure of the DUB domain of human AMSH-LP
Descriptor: 1,2-ETHANEDIOL, AMSH-like protease, PRASEODYMIUM ION, ...
Authors:Sato, Y, Azusa, Y, Yamagata, A, Mimura, H, Wang, X, Yamashita, M, Ookata, K, Nureki, O, Iwai, K, Komada, M, Fukai, S.
Deposit date:2008-05-01
Release date:2008-09-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains
Nature, 455, 2008
8TW0
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BU of 8tw0 by Molmil
Crystal Structure of a synthetic ABC heterotrimeric Collagen-like Peptide at 1.53 A
Descriptor: Collagen Mimetic Peptide A, Collagen Mimetic Peptide B, Collagen Mimetic Peptide C, ...
Authors:Miller, M.D, Cole, C.C, Xu, W, Walker, D.R, Hulgan, S.A.H, Pogostin, B.H, Swain, J.W.R, Duella, R, Misiura, M, Wang, X, Kolomeisky, A.B, Phillips Jr, G.N, Hartgerink, J.D.
Deposit date:2023-08-18
Release date:2024-05-29
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Heterotrimeric collagen helix with high specificity of assembly results in a rapid rate of folding.
Nat.Chem., 2024
7WPO
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BU of 7wpo by Molmil
Structure of NeoCOV RBD binding to Bat37 ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Cao, L, Wang, X, Tortorici, M.A, Veesler, D.
Deposit date:2022-01-24
Release date:2022-11-30
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Close relatives of MERS-CoV in bats use ACE2 as their functional receptors.
Nature, 612, 2022
7WPZ
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BU of 7wpz by Molmil
Structure of PDF-2180-COV RBD binding to Bat37 ACE2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, ...
Authors:Cao, L, Wang, X, Tortorici, M.A, Veesler, D.
Deposit date:2022-01-24
Release date:2022-11-30
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Close relatives of MERS-CoV in bats use ACE2 as their functional receptors.
Nature, 612, 2022

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