PDB Search results for query - 日本蛋白質結構資料庫

PDB: 143 results

Pig R615C RyR1 EGTA (all classes, open)
Descriptor:	Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine Receptor, ZINC ION
Authors:	Woll, K.W, Haji-Ghassemi, O, Van Petegem, F.
Deposit date:	2020-05-21
Release date:	2021-01-13
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (4.7 Å)
Cite:	Pathological conformations of disease mutant Ryanodine Receptors revealed by cryo-EM. Nat Commun, 12, 2021

6E61

Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-A in complex with mixed-linkage heptasaccharide
Descriptor:	1,2-ETHANEDIOL, MAGNESIUM ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose, ...
Authors:	Tamura, K, Gardill, B.R, Brumer, H, Van Petegem, F.
Deposit date:	2018-07-23
Release date:	2019-05-15
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.51 Å)
Cite:	Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus. Cell.Mol.Life Sci., 76, 2019

6E9B

Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-B in complex with mixed-linkage heptasaccharide
Descriptor:	Mixed-linkage glucan utilization locus (MLGUL) SGBP-B, SULFATE ION, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose
Authors:	Tamura, K, Gardill, B.R, Brumer, H, Van Petegem, F.
Deposit date:	2018-07-31
Release date:	2019-05-15
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (3.15 Å)
Cite:	Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus. Cell.Mol.Life Sci., 76, 2019

6E60

Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-A
Descriptor:	1,2-ETHANEDIOL, MAGNESIUM ION, mixed-linkage glucan utilization locus (MLGUL) SGBP-B
Authors:	Tamura, K, Gardill, B.R, Brumer, H, Van Petegem, F.
Deposit date:	2018-07-23
Release date:	2019-05-15
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus. Cell.Mol.Life Sci., 76, 2019

6DAH

2.5 Angstrom crystal structure of the N97S CaM mutant
Descriptor:	CALCIUM ION, Calmodulin-1
Authors:	Wang, K, Van Petegem, F.
Deposit date:	2018-05-01
Release date:	2018-10-17
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (2.502 Å)
Cite:	Arrhythmia mutations in calmodulin cause conformational changes that affect interactions with the cardiac voltage-gated calcium channel. Proc. Natl. Acad. Sci. U.S.A., 115, 2018

5SV8

Crystal Structure of the catalytic nucleophile and surface cysteine mutant of VvEG16 in complex with a xyloglucan oligosaccharide
Descriptor:	alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, probable xyloglucan endotransglucosylase/hydrolase protein 19
Authors:	McGregor, N.G.S, Tung, C.C, Van Petegem, F, Brumer, H.
Deposit date:	2016-08-05
Release date:	2016-09-21
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (1.588 Å)
Cite:	Crystallographic insight into the evolutionary origins of xyloglucan endotransglycosylases and endohydrolases. Plant J., 89, 2017

1H71

Psychrophilic Protease from Pseudoalteromonas 'TAC II 18'
Descriptor:	CALCIUM ION, SERRALYSIN, ZINC ION
Authors:	Villeret, V, Van Petegem, F, Aghajari, N, Chessa, J.-P, Gerday, C, Haser, R, Van Beeumen, J.
Deposit date:	2001-07-02
Release date:	2003-02-13
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystal Structures of a Psychrophilic Metalloprotease Reveal New Insights Into Catalysis by Cold-Adapted Proteases Proteins: Struct.,Funct., Genet., 50, 2003

6U39

2.4 Angstrom crystal structure of the D129G Ca-CaM:CaV1.2 IQ domain complex
Descriptor:	CALCIUM ION, Calmodulin-1, Voltage-dependent L-type calcium channel subunit alpha-1C
Authors:	Wang, K, Van Petegem, F.
Deposit date:	2019-08-21
Release date:	2020-02-19
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Arrhythmia mutations in calmodulin can disrupt cooperativity of Ca2+binding and cause misfolding. J. Physiol. (Lond.), 598, 2020

6VRR

Crystal structure of a disease mutant of the Voltage-gated Sodium Channel Beta 2 subunit extracellular domain
Descriptor:	GLYCEROL, Sodium channel subunit beta-2
Authors:	Das, S, Van Petegem, F.
Deposit date:	2020-02-09
Release date:	2020-08-26
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.45 Å)
Cite:	Biophysical Investigation of Sodium Channel Interaction with beta-Subunit Variants Associated with Arrhythmias. Bioelectricity, 2, 2020

6W1N

Pig Ryanodine Receptor (WT) in 5mM EGTA condition
Descriptor:	Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine Receptor, ZINC ION
Authors:	Woll, K.W, Haji-Ghassemi, O, Van Petegem, F.
Deposit date:	2020-03-04
Release date:	2021-01-06
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (4 Å)
Cite:	Pathological conformations of disease mutant Ryanodine Receptors revealed by cryo-EM. Nat Commun, 12, 2021

6U3D

1.75 Angstrom crystal structure of the N53I Ca-CaM:CaV1.2 IQ domain complex
Descriptor:	CALCIUM ION, Calmodulin-1, Voltage-dependent L-type calcium channel subunit alpha-1C
Authors:	Wang, K, Van Petegem, F.
Deposit date:	2019-08-21
Release date:	2020-02-19
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Arrhythmia mutations in calmodulin can disrupt cooperativity of Ca2+binding and cause misfolding. J. Physiol. (Lond.), 598, 2020

6U3A

1.65 Angstrom crystal structure of the N97S Ca-CaM:CaV1.2 IQ domain complex
Descriptor:	CALCIUM ION, Calmodulin-1, SODIUM ION, ...
Authors:	Wang, K, Van Petegem, F.
Deposit date:	2019-08-21
Release date:	2020-02-19
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Arrhythmia mutations in calmodulin can disrupt cooperativity of Ca2+binding and cause misfolding. J. Physiol. (Lond.), 598, 2020

6U3B

1.7 Angstrom crystal structure of the Q135P Ca-CaM:CaV1.2 IQ domain complex
Descriptor:	CALCIUM ION, Calmodulin-1, Voltage-dependent L-type calcium channel subunit alpha-1C
Authors:	Wang, K, Van Petegem, F.
Deposit date:	2019-08-21
Release date:	2020-02-19
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Arrhythmia mutations in calmodulin can disrupt cooperativity of Ca2+binding and cause misfolding. J. Physiol. (Lond.), 598, 2020

6UY8

Crystal structure of the STAC3 tandem SH3 domains - P269R, K329N
Descriptor:	1,2-ETHANEDIOL, CHLORIDE ION, SH3 and cysteine-rich domain-containing protein 3
Authors:	Rufenach, B, Van Petegem, F.
Deposit date:	2019-11-12
Release date:	2020-06-17
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.649 Å)
Cite:	Multiple Sequence Variants in STAC3 Affect Interactions with CaV1.1 and Excitation-Contraction Coupling. Structure, 28, 2020

6B28

Crystal structure of human STAC2 Tandem SH3 Domains Q347I (296-411)
Descriptor:	SH3 and cysteine-rich domain-containing protein 2
Authors:	Wong King Yuen, S.M, Tung, C.C, Van Petegem, F.
Deposit date:	2017-09-19
Release date:	2017-10-25
Last modified:	2024-03-13
Method:	X-RAY DIFFRACTION (2.55 Å)
Cite:	Structural insights into binding of STAC proteins to voltage-gated calcium channels. Proc. Natl. Acad. Sci. U.S.A., 114, 2017

6B26

Crystal structure of human STAC2 Tandem SH3 Domains (296-411)
Descriptor:	SH3 and cysteine-rich domain-containing protein 2
Authors:	Wong King Yuen, S.M, Van Petegem, F.
Deposit date:	2017-09-19
Release date:	2017-10-25
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (1.2 Å)
Cite:	Structural insights into binding of STAC proteins to voltage-gated calcium channels. Proc. Natl. Acad. Sci. U.S.A., 114, 2017

6B25

Crystal structure of human STAC1 Tandem SH3 Domains (288-402)
Descriptor:	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SH3 and cysteine-rich domain-containing protein
Authors:	Wong King Yuen, S.M, Van Petegem, F.
Deposit date:	2017-09-19
Release date:	2017-10-25
Last modified:	2024-03-13
Method:	X-RAY DIFFRACTION (2.39 Å)
Cite:	Structural insights into binding of STAC proteins to voltage-gated calcium channels. Proc. Natl. Acad. Sci. U.S.A., 114, 2017

6ULB

Sex Hormone-binding globulin mutant E176K in complex with Danazol
Descriptor:	CALCIUM ION, Danazol, Sex hormone-binding globulin
Authors:	Round, P.W, Das, S, Van Petegem, F.
Deposit date:	2019-10-07
Release date:	2020-10-21
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Structural and biochemical analyses of danazol interactions with sex hormone-binding globulin and effects on androgen action To Be Published

6VHO

Glycoside hydrolase family 16 endo-glucanase from Bacteroides ovatus in complex with G4G4G3G-NHCOCH2Br
Descriptor:	Glycosyl hydrolase family 16, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-N-acetyl-beta-D-glucopyranosylamine
Authors:	Tamura, K, Brumer, H, van Petegem, F.
Deposit date:	2020-01-10
Release date:	2021-01-13
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.148 Å)
Cite:	Orthogonal Active-Site Labels for Mixed-Linkage endo-beta-Glucanases. Acs Chem.Biol., 16, 2021

6UY7

Crystal structure of the STAC3 tandem SH3 domains - P269R
Descriptor:	1,2-ETHANEDIOL, SH3 and cysteine-rich domain-containing protein 3
Authors:	Rufenach, B, Van Petegem, F.
Deposit date:	2019-11-12
Release date:	2020-06-17
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.105 Å)
Cite:	Multiple Sequence Variants in STAC3 Affect Interactions with CaV1.1 and Excitation-Contraction Coupling. Structure, 28, 2020

6UY9

Crystal structure of the STAC3 tandem SH3 domains - P269R, W284S
Descriptor:	1,2-ETHANEDIOL, SH3 and cysteine-rich domain-containing protein 3, SODIUM ION
Authors:	Rufenach, B, Van Petegem, F.
Deposit date:	2019-11-12
Release date:	2020-06-17
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Multiple Sequence Variants in STAC3 Affect Interactions with CaV1.1 and Excitation-Contraction Coupling. Structure, 28, 2020

5C33

Crystal Structure of Mouse Ryanodine Receptor 2 SPRY1 Domain
Descriptor:	CHLORIDE ION, ISOPROPYL ALCOHOL, Ryanodine receptor 2
Authors:	Yuchi, Z, Van Petegem, F.
Deposit date:	2015-06-16
Release date:	2015-08-05
Last modified:	2019-12-04
Method:	X-RAY DIFFRACTION (1.21 Å)
Cite:	Crystal structures of ryanodine receptor SPRY1 and tandem-repeat domains reveal a critical FKBP12 binding determinant. Nat Commun, 6, 2015

5C30

Crystal Structure of Rabbit Ryanodine Receptor 1 Repeat12 Domain
Descriptor:	ISOPROPYL ALCOHOL, Ryanodine receptor 1
Authors:	Yuchi, Z, Van Petegem, F.
Deposit date:	2015-06-16
Release date:	2015-08-05
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (1.55 Å)
Cite:	Crystal structures of ryanodine receptor SPRY1 and tandem-repeat domains reveal a critical FKBP12 binding determinant. Nat Commun, 6, 2015

3OXQ

Crystal Structure of Ca2+/CaM-CaV1.2 pre-IQ/IQ domain complex
Descriptor:	CALCIUM ION, Calmodulin, Voltage-dependent L-type calcium channel subunit alpha-1C
Authors:	Kim, E.Y, Rumpf, C.H, Van Petegem, F, Arant, R, Findeisen, F, Cooley, E.S, Isacoff, E.Y, Minor, D.L.
Deposit date:	2010-09-21
Release date:	2010-11-03
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (2.55 Å)
Cite:	Multiple C-terminal tail Ca(2+)/CaMs regulate Ca(V)1.2 function but do not mediate channel dimerization. Embo J., 29, 2010

3QR5

Structure of the first domain of a cardiac Ryanodine Receptor mutant with exon 3 deleted
Descriptor:	Cardiac Ca2+ release channel
Authors:	Lobo, P.A, Van Petegem, F.
Deposit date:	2011-02-17
Release date:	2011-06-08
Last modified:	2023-07-26
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	The deletion of exon 3 in the cardiac ryanodine receptor is rescued by beta strand switching. Structure, 19, 2011

<1 2 345 6 >

Total results:	143
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"van Petegem, F"