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PDB: 357 件
2NCQ
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BU of 2ncq by Molmil
Structural insights of r(CGG) motif found in Fragile X Syndrome and Fragile-X associated tremor/ataxia syndrome (FXTAS) at 45 degree C
分子名称: RNA_(5'-R(P*CP*CP*GP*CP*GP*GP*CP*GP*G)-3')
著者Kumar, A, Mishra, S.K.
登録日2016-04-12
公開日2017-04-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural insights reveal the dynamics of the repeating r(CGG) motif found in Fragile X Syndrome and Fragile-X associated tremor/ataxia syndrome (FXTAS)
To be Published
7GAA
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BU of 7gaa by Molmil
PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with Z1198233191
分子名称: (4S)-imidazo[1,2-a]pyrimidine-5,7-diol, 1,2-ETHANEDIOL, CHLORIDE ION, ...
著者Kumar, A, Marples, P.G, Tomlinson, C.W.E, Fearon, D, von-Delft, F, Knapp, S, Structural Genomics Consortium (SGC)
登録日2023-08-10
公開日2024-09-04
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献PanDDA analysis group deposition
To Be Published
5AX2
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BU of 5ax2 by Molmil
Crystal structure of S.cerevisiae Kti11p
分子名称: CADMIUM ION, Diphthamide biosynthesis protein 3
著者Kumar, A, Nagarathinam, K, Tanabe, M, Balbach, J.
登録日2015-07-13
公開日2016-07-20
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Hyperbolic Pressure-Temperature Phase Diagram of the Zinc-Finger Protein apoKti11 Detected by NMR Spectroscopy.
J Phys Chem B, 123, 2019
5C9L
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BU of 5c9l by Molmil
Crystal structure of native PLL lectin from Photorhabdus luminescens at 1.65 A resolution
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
著者Kumar, A, Sykorova, P, Demo, G, Dobes, P, Hyrsl, P, Wimmerova, M.
登録日2015-06-27
公開日2016-10-19
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献A Novel Fucose-binding Lectin from Photorhabdus luminescens (PLL) with an Unusual Heptabladed beta-Propeller Tetrameric Structure.
J.Biol.Chem., 291, 2016
3KK0
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BU of 3kk0 by Molmil
Crystal structure of partially folded intermediate state of peptidyl-tRNA hydrolase from Mycobacterium smegmatis
分子名称: 1,2-ETHANEDIOL, BETA-MERCAPTOETHANOL, DI(HYDROXYETHYL)ETHER, ...
著者Kumar, A, Singh, N, Yadav, R, Sharma, S, Arora, A, Singh, T.P.
登録日2009-11-04
公開日2010-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structures of Fully-Folded Native and Partially-Folded Intermediate States of Peptidyl-tRNA Hydrolase from Mycobacterium smegmatis
To be Published
1HXI
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BU of 1hxi by Molmil
AN UNEXPECTED EXTENDED CONFORMATION FOR THE THIRD TPR MOTIF OF THE PEROXIN PEX5 FROM TRYPANOSOMA BRUCEI
分子名称: MAGNESIUM ION, PEROXISOME TARGETING SIGNAL 1 RECEPTOR PEX5
著者Kumar, A, Roach, C, Hirsh, I.S, Turley, S, deWalque, S, Michels, P.A.M, Hol, W.G.J.
登録日2001-01-15
公開日2001-03-21
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献An unexpected extended conformation for the third TPR motif of the peroxin PEX5 from Trypanosoma brucei.
J.Mol.Biol., 307, 2001
5CDE
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BU of 5cde by Molmil
R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris
分子名称: Proline dipeptidase, SULFATE ION, ZINC ION
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
登録日2015-07-03
公開日2016-09-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution
To Be Published
3P9N
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BU of 3p9n by Molmil
Rv2966c of M. tuberculosis is a RsmD-like methyltransferase
分子名称: ACETATE ION, POSSIBLE METHYLTRANSFERASE (METHYLASE)
著者Kumar, A, Malhotra, K, Saigal, K, Sinha, K.M, Taneja, B.
登録日2010-10-18
公開日2011-04-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural and functional characterization of Rv2966c protein reveals an RsmD-like methyltransferase from Mycobacterium tuberculosis and the role of its N-terminal domain in target recognition
J.Biol.Chem., 286, 2011
5CNX
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BU of 5cnx by Molmil
Crystal structure of Xaa-Pro aminopeptidase from Escherichia coli K12
分子名称: Aminopeptidase YpdF, CACODYLATE ION, GLYCEROL, ...
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D.
登録日2015-07-18
公開日2016-07-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases
Proteins, 2018
3DSR
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BU of 3dsr by Molmil
ADP in transition binding site in the subunit B of the energy converter A1Ao ATP synthase
分子名称: ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase beta chain
著者Kumar, A, Manimekalai, S.M.S, Balakrishna, A.M, Gruber, G.
登録日2008-07-14
公開日2009-06-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the nucleotide-binding subunit B of the energy producer A1A0 ATP synthase in complex with adenosine diphosphate
Acta Crystallogr.,Sect.D, 64, 2008
5CDL
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BU of 5cdl by Molmil
Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
分子名称: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
登録日2015-07-04
公開日2016-08-10
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative)
To Be Published
2MS5
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BU of 2ms5 by Molmil
Structural dynamics of double-helical RNA having CAG motif
分子名称: RNA_(5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')
著者Kumar, A, Tawani, A.
登録日2014-07-23
公開日2015-01-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington's Disease (HD) and Spinocerebellar Ataxias (SCAs)
Plos One, 10, 2015
7FFP
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BU of 7ffp by Molmil
Crystal structure of di-peptidase-E from Xenopus laevis
分子名称: ASPARTIC ACID, Alpha-aspartyl dipeptidase, CALCIUM ION
著者Kumar, A, Singh, R, Makde, R.D.
登録日2021-07-23
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of aspartyl dipeptidase from Xenopus laevis revealed ligand binding induced loop ordering and catalytic triad assembly.
Proteins, 90, 2022
4ERX
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BU of 4erx by Molmil
Crystal structure of the complex of peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with diethylene glycol at 2.5 Angstrom resolution
分子名称: DI(HYDROXYETHYL)ETHER, Peptidyl-tRNA hydrolase
著者Kumar, A, Singh, A, Singh, N, Sinha, M, Sharma, S, Arora, A, Singh, T.P.
登録日2012-04-21
公開日2012-05-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the complex of peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with diethylene glycol at 2.5 Angstrom resolution
To be Published
5CDV
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BU of 5cdv by Molmil
Proline dipeptidase from Deinococcus radiodurans R1
分子名称: MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ...
著者Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.
登録日2015-07-05
公開日2016-08-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Proline dipeptidase from Deinococcus radiodurans R1 at 1.45 Angstrom resolution
To Be Published
5C9P
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BU of 5c9p by Molmil
Crystal structure of recombinant PLL lectin complexed with L-fucose from Photorhabdus luminescens at 1.75 A resolution
分子名称: GLYCEROL, PLL lectin, alpha-L-fucopyranose
著者Kumar, A, Sykorova, P, Demo, G, Dobes, P, Hyrsl, P, Wimmerova, M.
登録日2015-06-28
公開日2016-10-19
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献A Novel Fucose-binding Lectin from Photorhabdus luminescens (PLL) with an Unusual Heptabladed beta-Propeller Tetrameric Structure.
J.Biol.Chem., 291, 2016
2IQ6
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BU of 2iq6 by Molmil
Crystal Structure of the Aminopeptidase from Vibrio proteolyticus in Complexation with Leucyl-leucyl-leucine.
分子名称: Bacterial leucyl aminopeptidase, Peptide, (Leucyl-leucyl-leucine), ...
著者Kumar, A, Narayanan, B, Kim, J.-J.P, Bennett, B.
登録日2006-10-13
公開日2007-08-28
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Experimental evidence for a metallohydrolase mechanism in which the nucleophile is not delivered by a metal ion: EPR spectrokinetic and structural studies of aminopeptidase from Vibrio proteolyticus
Biochem.J., 403, 2007
3P2J
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BU of 3p2j by Molmil
Crystal structure of peptidyl-tRNA hydrolase from Mycobacterium smegmatis at 2.2 A resolution
分子名称: Peptidyl-tRNA hydrolase
著者Kumar, A, Singh, A, Yadav, R, Sinha, M, Arora, A, Sharma, S, Singh, T.P.
登録日2010-10-02
公開日2010-11-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Crystal Structure of peptidyl-tRNA hydrolase from Mycobacterium smegmatis at 2.2 A resolution
To be Published
5C9O
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BU of 5c9o by Molmil
Crystal structure of recombinant PLL lectin from Photorhabdus luminescens at 1.5 A resolution
分子名称: GLYCEROL, PLL lectin
著者Kumar, A, Sykorova, P, Demo, G, Dobes, P, Hyrsl, P, Wimmerova, M.
登録日2015-06-28
公開日2016-10-19
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A Novel Fucose-binding Lectin from Photorhabdus luminescens (PLL) with an Unusual Heptabladed beta-Propeller Tetrameric Structure.
J.Biol.Chem., 291, 2016
5C23
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BU of 5c23 by Molmil
Parkin (S65DUblR0RBR)
分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ...
著者Kumar, A, Aguirre, J.D, Condos, T.E.C, Martinez-Torres, R.J, Chaugule, V.K, Toth, R, Sundaramoorthy, R, Mercier, P, Knebel, A, Spratt, D.E, Barber, K.R, Shaw, G.S, Walden, H.
登録日2015-06-15
公開日2015-07-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis.
Embo J., 34, 2015
5C1Z
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BU of 5c1z by Molmil
Parkin (UblR0RBR)
分子名称: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ...
著者kumar, A, Aguirre, J.D, Condos, T.E.C, Martinez-Torres, R.J, Chaugule, V.K, Toth, R, Sundaramoorthy, R, Mercier, P, Knebel, A, Spratt, D.E, Barber, K.R, Shaw, G.S, Walden, H.
登録日2015-06-15
公開日2015-07-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis.
Embo J., 34, 2015
4K55
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BU of 4k55 by Molmil
Structure of the extracellular domain of butyrophilin BTN3A1 in complex with (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate (HMBPP)
分子名称: (2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate, Butyrophilin subfamily 3 member A1
著者Kumar, A, Mori, L, De Libero, G.
登録日2013-04-13
公開日2013-07-24
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Butyrophilin 3A1 binds phosphorylated antigens and stimulates human gamma delta T cells.
Nat.Immunol., 14, 2013
4JKW
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BU of 4jkw by Molmil
Structure of the extracellular domain of butyrophilin BTN3A1 in complex with Isopentenyl pyrophosphate (IPP)
分子名称: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Butyrophilin subfamily 3 member A1
著者Kumar, A, Mori, L, De Libero, G.
登録日2013-03-12
公開日2013-07-24
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Butyrophilin 3A1 binds phosphorylated antigens and stimulates human gamma delta T cells.
Nat.Immunol., 14, 2013
1YXU
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BU of 1yxu by Molmil
Crystal Structure of Kinase Pim1 in Complex with AMP
分子名称: ADENOSINE MONOPHOSPHATE, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase Pim-1
著者Kumar, A, Mandiyan, V, Suzuki, Y, Zhang, C, Rice, J, Tsai, J, Artis, D.R, Ibrahim, P, Bremer, R.
登録日2005-02-22
公開日2005-04-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Crystal Structures of Proto-oncogene Kinase Pim1: A Target of Aberrant Somatic Hypermutations in Diffuse Large Cell Lymphoma.
J.Mol.Biol., 348, 2005
1YXX
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Crystal Structure of Kinase Pim1 in complex with (3E)-3-[(4-HYDROXYPHENYL)IMINO]-1H-INDOL-2(3H)-ONE
分子名称: (3E)-3-[(4-HYDROXYPHENYL)IMINO]-1H-INDOL-2(3H)-ONE, IMIDAZOLE, Proto-oncogene serine/threonine-protein kinase Pim-1
著者Kumar, A, Mandiyan, V, Suzuki, Y, Zhang, C, Rice, J, Tsai, J, Artis, D.R, Ibrahim, P, Bremer, R.
登録日2005-02-22
公開日2005-04-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of proto-oncogene kinase Pim1: a target of aberrant somatic hypermutations in diffuse large cell lymphoma.
J.Mol.Biol., 348, 2005

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