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PDB: 238 results

3GYN
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Crystal structure of HCV NS5B polymerase with a novel monocyclic dihydropyridinone inhibitor
Descriptor: N-{3-[(5R)-1-cyclopentyl-4-hydroxy-5-methyl-5-(3-methylbutyl)-2-oxo-1,2,5,6-tetrahydropyridin-3-yl]-1,1-dioxido-4H-1,2,4-benzothiadiazin-7-yl}methanesulfonamide, RNA-directed RNA polymerase
Authors:Zhao, Q, Showalter, R.E, Han, Q, Kissinger, C.R.
Deposit date:2009-04-04
Release date:2009-12-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:5,5'- and 6,6'-dialkyl-5,6-dihydro-1H-pyridin-2-ones as potent inhibitors of HCV NS5B polymerase.
Bioorg.Med.Chem.Lett., 19, 2009
7YS6
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BU of 7ys6 by Molmil
Cryo-EM structure of the Serotonin 6 (5-HT6) receptor-DNGs-scFv16 complex
Descriptor: 5-hydroxytryptamine receptor 6, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Zhao, Q.Y, Wang, Y.F, He, L, Wang, S, Cong, Y.
Deposit date:2022-08-11
Release date:2023-03-29
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural insights into constitutive activity of 5-HT 6 receptor.
Proc.Natl.Acad.Sci.USA, 120, 2023
3CDE
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BU of 3cde by Molmil
Crystal structure of HCV NS5B polymerase with a novel Pyridazinone inhibitor
Descriptor: N-{3-[5-hydroxy-2-(3-methylbutyl)-3-oxo-6-thiophen-2-yl-2,3-dihydropyridazin-4-yl]-1,1-dioxido-2H-1,2,4-benzothiadiazin-7-yl}methanesulfonamide, RNA-directed RNA polymerase
Authors:Zhao, Q, Showalter, R.E, Han, Q, Kissinger, C.R.
Deposit date:2008-02-26
Release date:2009-03-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Novel HCV NS5B polymerase inhibitors derived from 4-(1',1'-dioxo-1',4'-dihydro-1'lambda(6)-benzo[1',2',4']thiadiazin-3'-yl)-5-hydroxy-2H-pyridazin-3-ones. Part 3: Further optimization of the 2-, 6-, and 7'-substituents and initial pharmacokinetic assessments.
Bioorg.Med.Chem.Lett., 18, 2008
3IGV
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Crystal structure of HCV NS5B polymerase with a novel monocyclic dihydro-pyridinone inhibitor
Descriptor: N-{3-[(6S)-6-ethyl-1-(4-fluorobenzyl)-4-hydroxy-2-oxo-1,2,5,6-tetrahydropyridin-3-yl]-1,1-dioxido-2H-1,2,4-benzothiadiazin-7-yl}methanesulfonamide, RNA-DIRECTED RNA POLYMERASE
Authors:Zhao, Q, Showalter, R.E, Han, Q, Kissinger, C.R.
Deposit date:2009-07-28
Release date:2009-12-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:5,5'- and 6,6'-dialkyl-5,6-dihydro-1H-pyridin-2-ones as potent inhibitors of HCV NS5B polymerase.
Bioorg.Med.Chem.Lett., 19, 2009
1JXC
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BU of 1jxc by Molmil
Minimized NMR structure of ATT, an Arabidopsis trypsin/chymotrypsin inhibitor
Descriptor: Putative trypsin inhibitor ATTI-2
Authors:Zhao, Q, Chae, Y.K, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2001-09-06
Release date:2003-01-07
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:NMR Solution Structure of ATTp, an Arabidopsis thaliana Trypsin Inhibitor
Biochemistry, 41, 2002
4Z7F
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BU of 4z7f by Molmil
Crystal structure of FolT bound with folic acid
Descriptor: FOLIC ACID, Folate ECF transporter
Authors:Zhao, Q, Wang, C.C, Wang, C.Y, Zhang, P.
Deposit date:2015-04-07
Release date:2015-07-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.194 Å)
Cite:Structures of FolT in substrate-bound and substrate-released conformations reveal a gating mechanism for ECF transporters
Nat Commun, 6, 2015
4REB
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Structural Insights into 5' Flap DNA Unwinding and Incision by the Human FAN1 Dimer
Descriptor: DNA (5'-D(P*CP*GP*TP*GP*GP*CP*GP*AP*GP*CP*GP*CP*TP*CP*GP*CP*CP*AP*CP*G)-3'), DNA (5'-D(P*GP*CP*TP*CP*GP*CP*CP*AP*CP*G)-3'), DNA (5'-D(P*GP*TP*GP*GP*CP*GP*AP*GP*C)-3'), ...
Authors:Zhao, Q, Xue, X, Longerich, S, Sung, P, Xiong, Y.
Deposit date:2014-09-22
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structural insights into 5' flap DNA unwinding and incision by the human FAN1 dimer.
Nat Commun, 5, 2014
4REC
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A nuclease-DNA complex form 3
Descriptor: DNA (40-MER), Fanconi-associated nuclease 1, IODIDE ION
Authors:Zhao, Q, Xue, X, Longerich, S, Sung, P, Xiong, Y.
Deposit date:2014-09-22
Release date:2014-12-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into 5' flap DNA unwinding and incision by the human FAN1 dimer.
Nat Commun, 5, 2014
4REA
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BU of 4rea by Molmil
A Nuclease DNA complex
Descriptor: DNA (5'-D(*TP*GP*CP*TP*CP*GP*CP*CP*AP*C)-3'), DNA (5'-D(P*CP*GP*TP*GP*GP*CP*GP*AP*GP*C)-3'), DNA (5'-D(P*GP*GP*CP*GP*AP*GP*CP*GP*CP*TP*CP*GP*CP*CP*AP*CP*G)-3'), ...
Authors:Zhao, Q, Xue, X, Longerich, S, Sung, P, Xiong, Y.
Deposit date:2014-09-22
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.81 Å)
Cite:Structural insights into 5' flap DNA unwinding and incision by the human FAN1 dimer.
Nat Commun, 5, 2014
3BR9
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BU of 3br9 by Molmil
Crystal Structure of HCV NS5B Polymerase with a Novel Pyridazinone Inhibitor
Descriptor: (2R)-2-({3-[5-hydroxy-2-(3-methylbutyl)-3-oxo-6-thiophen-2-yl-2,3-dihydropyridazin-4-yl]-1,1-dioxido-2H-1,2,4-benzothia diazin-7-yl}oxy)propanamide, RNA-directed RNA polymerase
Authors:Zhao, Q, Showalter, R.E, Han, Q, Kissinger, C.R.
Deposit date:2007-12-21
Release date:2008-12-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Novel HCV NS5B polymerase inhibitors derived from 4-(1',1'-dioxo-1',4'-dihydro-1'lambda6-benzo[1',2',4']thiadiazin-3'-yl)-5-hydroxy-2H-pyridazin-3-ones. Part 1: exploration of 7'-substitution of benzothiadiazine.
Bioorg.Med.Chem.Lett., 18, 2008
3BSC
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Crystal Structure of HCV NS5B Polymerase with a Novel Pyridazinone Inhibitor
Descriptor: 5-hydroxy-4-(7-methoxy-1,1-dioxido-2H-1,2,4-benzothiadiazin-3-yl)-2-(3-methylbutyl)-6-phenylpyridazin-3(2H)-one, RNA-directed RNA polymerase
Authors:Zhao, Q, Showalter, R.E, Han, Q, Kissinger, C.R.
Deposit date:2007-12-23
Release date:2008-12-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Novel HCV NS5B polymerase inhibitors derived from 4-(1',1'-dioxo-1',4'-dihydro-1'lambda6-benzo[1',2',4']thiadiazin-3'-yl)-5-hydroxy-2H-pyridazin-3-ones. Part 1: exploration of 7'-substitution of benzothiadiazine.
Bioorg.Med.Chem.Lett., 18, 2008
1ZX7
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Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative
Descriptor: 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3', 5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3'
Authors:Zhao, Q, Zhao, F, Blount, K.F, Han, Q, Tor, Y, Hermann, T.
Deposit date:2005-06-07
Release date:2005-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Molecular recognition of RNA by neomycin and a restricted neomycin derivative
Angew.Chem.Int.Ed.Engl., 44, 2005
1ZZ5
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Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative
Descriptor: 13,15-DIAMINO-2-(AMINOMETHYL)-3,4,9,12-TETRAHYDROXYHEXADECAHYDRO-2H-7,10-EPOXYPYRANO[2,3-B][1,10,4]BENZODIOXAZACYCLODODECIN-8-YL 2,6-DIAMINO-2,6-DIDEOXYHEXOPYRANOSIDE, 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3', 5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3', ...
Authors:Zhao, Q, Zhao, F, Blount, K.F, Han, Q, Tor, Y, Hermann, T.
Deposit date:2005-06-13
Release date:2005-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3 Å)
Cite:Molecular recognition of RNA by neomycin and a restricted neomycin derivative
Angew.Chem.Int.Ed.Engl., 44, 2005
3D5M
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BU of 3d5m by Molmil
Crystal structure of HCV NS5B polymerase with a novel pyridazinone inhibitor
Descriptor: N-({3-[(5S)-5-tert-butyl-1-(3-chloro-4-fluorobenzyl)-4-hydroxy-2-oxo-2,5-dihydro-1H-pyrrol-3-yl]-1,1-dioxido-1,2-benzis othiazol-7-yl}methyl)methanesulfonamide, RNA-directed RNA polymerase
Authors:Zhao, Q, Showalter, R.E, Han, Q, Kissinger, C.R.
Deposit date:2008-05-16
Release date:2009-05-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-based design, synthesis, and biological evaluation of 1,1-dioxoisothiazole and benzo[b]thiophene-1,1-dioxide derivatives as novel inhibitors of hepatitis C virus NS5B polymerase.
Bioorg.Med.Chem.Lett., 18, 2008
2A04
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BU of 2a04 by Molmil
Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative
Descriptor: 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3', 5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3', MAGNESIUM ION, ...
Authors:Zhao, Q, Zhao, F, Blount, K.F, Han, Q, Tor, Y, Hermann, T.
Deposit date:2005-06-15
Release date:2005-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Molecular recognition of RNA by neomycin and a restricted neomycin derivative
Angew.Chem.Int.Ed.Engl., 44, 2005
3CVK
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BU of 3cvk by Molmil
Crystal structure of HCV NS5B polymerase with a novel pyridazinone inhibitor
Descriptor: N-{3-[1-(3,3-Dimethyl-butyl)-4-hydroxy-2-oxo-1,2,4a,5,6,7-hexahydro-pyrrolo[1,2-b]pyridazin-3-yl]-1,1-dioxo-1,2-dihydro -1lambda6-benzo[1,2,4]thiadiazin-7-yl}-methanesulfonamide, RNA-directed RNA polymerase
Authors:Zhao, Q, Showalter, R.E, Han, Q, Kissinger, C.R.
Deposit date:2008-04-18
Release date:2009-04-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Hexahydro-pyrrolo- and hexahydro-1H-pyrido[1,2-b]pyridazin-2-ones as potent inhibitors of HCV NS5B polymerase.
Bioorg.Med.Chem.Lett., 18, 2008
1B1C
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BU of 1b1c by Molmil
CRYSTAL STRUCTURE OF THE FMN-BINDING DOMAIN OF HUMAN CYTOCHROME P450 REDUCTASE AT 1.93A RESOLUTION
Descriptor: CALCIUM ION, FLAVIN MONONUCLEOTIDE, PROTEIN (NADPH-CYTOCHROME P450 REDUCTASE)
Authors:Zhao, Q, Modi, S, Smith, G, Paine, M, Mcdonagh, P.D, Wolf, C.R, Tew, D, Lian, L.-Y, Roberts, G.C.K, Driessen, H.P.C.
Deposit date:1998-11-19
Release date:1999-11-24
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Crystal structure of the FMN-binding domain of human cytochrome P450 reductase at 1.93 A resolution.
Protein Sci., 8, 1999
4A4U
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UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops
Descriptor: 5'-R(*GP*GP*AP*CP*CP*CP*GP*GP*CP*UP*GP*AP*CP*GP *CP*UP*GP*GP*GP*UP*CP*C)-3'
Authors:Zhao, Q, Huang, H, Nagaswamy, U, Xia, Y, Gao, X, Fox, G.
Deposit date:2011-10-20
Release date:2012-05-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unac Tetraloops: To What Extent Can They Mimic Gnra Tetraloops
Biopolymers, 97, 2012
4A4S
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BU of 4a4s by Molmil
UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops
Descriptor: 5'-R(*GP*GP*AP*CP*CP*CP*GP*GP*CP*UP*CP*AP*CP*GP *CP*UP*GP*GP*GP*UP*CP*C)-3'
Authors:Zhao, Q, Huang, H, Nagaswamy, U, Xia, Y, Gao, X, Fox, G.
Deposit date:2011-10-20
Release date:2012-05-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unac Tetraloops: To What Extent Can They Mimic Gnra Tetraloops
Biopolymers, 97, 2012
4A4T
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BU of 4a4t by Molmil
UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops
Descriptor: 5'-R(*GP*GP*AP*CP*CP*CP*GP*GP*CP*UP*UP*AP*CP*GP *CP*UP*GP*GP*GP*UP*CP*C)-3'
Authors:Zhao, Q, Huang, H, Nagaswamy, U, Xia, Y, Gao, X, Fox, G.
Deposit date:2011-10-20
Release date:2012-05-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unac Tetraloops: To What Extent Can They Mimic Gnra Tetraloops
Biopolymers, 97, 2012
4A4R
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BU of 4a4r by Molmil
UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops
Descriptor: 5'-R(*GMP*GP*AP*CP*CP*CP*GP*GP*CP*UP*AP*AP*CP*GP *CP*UP*GP*GP*GP*UP*CP*C)-3'
Authors:Zhao, Q, Huang, H, Nagaswamy, U, Xia, Y, Gao, X, Fox, G.
Deposit date:2011-10-20
Release date:2012-05-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Unac Tetraloops: To What Extent Can They Mimic Gnra Tetraloops
Biopolymers, 97, 2012
4NE1
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BU of 4ne1 by Molmil
Human MHF1 MHF2 DNA complexes
Descriptor: Centromere protein S, Centromere protein X, DNA (26-MER)
Authors:Zhao, Q, Saro, D, Sachpatzidis, A, Sung, P, Xiong, Y.
Deposit date:2013-10-28
Release date:2014-01-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (6.499 Å)
Cite:The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes.
Nat Commun, 5, 2014
3D23
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Main protease of HCoV-HKU1
Descriptor: 3C-like proteinase, N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE
Authors:Zhao, Q, Chen, C, Li, S, Zou, Y.
Deposit date:2008-05-07
Release date:2008-09-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the main protease from a global infectious human coronavirus, HCoV-HKU1.
J.Virol., 82, 2008
4NDY
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BU of 4ndy by Molmil
Human MHF1-MHF2 DNA complex
Descriptor: Centromere protein S, Centromere protein X, DNA (26-MER)
Authors:Zhao, Q, Saro, D, Sachpatzidis, A, Sung, P, Xiong, Y.
Deposit date:2013-10-28
Release date:2014-01-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (6.999 Å)
Cite:The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes.
Nat Commun, 5, 2014
1A6Y
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REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
Descriptor: DNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3'), ORPHAN NUCLEAR RECEPTOR NR1D1, ...
Authors:Zhao, Q, Khorasanizadeh, S, Rastinejad, F.
Deposit date:1998-03-04
Release date:1998-10-21
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural elements of an orphan nuclear receptor-DNA complex.
Mol.Cell, 1, 1998

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