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PDB: 1640 results

2LBC
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BU of 2lbc by Molmil
solution structure of tandem UBA of USP13
Descriptor: Ubiquitin carboxyl-terminal hydrolase 13
Authors:Zhang, Y, Zhou, C, Zhou, Z, Song, A, Hu, H.
Deposit date:2011-03-29
Release date:2012-03-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Domain Analysis Reveals That a Deubiquitinating Enzyme USP13 Performs Non-Activating Catalysis for Lys63-Linked Polyubiquitin.
Plos One, 6, 2011
8J57
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BU of 8j57 by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in complex with bedaquiline(BDQ)
Descriptor: ATP synthase subunit a, ATP synthase subunit c, Bedaquiline
Authors:Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
Deposit date:2023-04-21
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
8J58
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BU of 8j58 by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in the apo-form
Descriptor: ATP synthase subunit a, ATP synthase subunit c
Authors:Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
Deposit date:2023-04-21
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
8JR1
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BU of 8jr1 by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in complex with TBAJ-587
Descriptor: (1~{S},2~{S})-1-(6-bromanyl-2-methoxy-quinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2-fluoranyl-3-methoxy-phenyl)butan-2-ol, ATP synthase subunit a, ATP synthase subunit c
Authors:Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
Deposit date:2023-06-15
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
7XED
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BU of 7xed by Molmil
Crystal Structure of OsCIE1-Ubox and OsUBC8 complex
Descriptor: U-box domain-containing protein 12, UBC core domain-containing protein
Authors:Zhang, Y, Yu, C.Z.
Deposit date:2022-03-30
Release date:2023-10-04
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Release of a ubiquitin brake activates OsCERK1-triggered immunity in rice.
Nature, 629, 2024
8JY0
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BU of 8jy0 by Molmil
Crystal structure of RhoBAST complexed with TMR-DN
Descriptor: 2,4-dinitroaniline, 5-aminocarbonyl-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Zhang, Y, Xiao, Y, Xu, Z, Fang, X.
Deposit date:2023-07-02
Release date:2024-05-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural mechanisms for binding and activation of a contact-quenched fluorophore by RhoBAST.
Nat Commun, 15, 2024
2M1Z
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BU of 2m1z by Molmil
Solution structure of uncharacterized protein lmo0427
Descriptor: Lmo0427 protein
Authors:Zhang, Y, Winsor, J, Radhakrishnan, I, Anderson, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-12-10
Release date:2012-12-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of hypothetical protein lmo0427
To be Published
2MES
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BU of 2mes by Molmil
Backbone 1H, 13C, 15N resonance assignments of calcium-bound calmodulin in complex with PSD95 N-terminal peptide
Descriptor: CALCIUM ION, Calmodulin, Disks large homolog 4
Authors:Zhang, Y, Ames, J.B.
Deposit date:2013-09-26
Release date:2014-12-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Capping of the N-terminus of PSD-95 by calmodulin triggers its postsynaptic release.
Embo J., 33, 2014
2L3M
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BU of 2l3m by Molmil
Solution structure of the putative copper-ion-binding protein from Bacillus anthracis str. Ames
Descriptor: Copper-ion-binding protein
Authors:Zhang, Y, Winsor, J, Dubrovska, I, Anderson, W, Radhakrishnan, I, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-09-16
Release date:2011-01-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:To be published
To be Published
2KNQ
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BU of 2knq by Molmil
Solution structure of E.Coli GspH
Descriptor: General secretion pathway protein H
Authors:Zhang, Y, Jin, C.
Deposit date:2009-08-31
Release date:2010-09-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of GspH
To be Published
2OF6
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BU of 2of6 by Molmil
Structure of immature West Nile virus
Descriptor: envelope glycoprotein E
Authors:Zhang, Y, Kaufmann, B, Chipman, P.R, Kuhn, R.J, Rossmann, M.G.
Deposit date:2007-01-02
Release date:2007-04-03
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (24 Å)
Cite:Structure of immature west nile virus.
J.Virol., 81, 2007
2KHT
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BU of 2kht by Molmil
NMR Structure of human alpha defensin HNP-1
Descriptor: Neutrophil defensin 1
Authors:Zhang, Y, Li, S, Doherty, T.F, Lubkowski, J, Lu, W, Li, J, Barinka, C, Hong, M.
Deposit date:2009-04-11
Release date:2010-02-09
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:Resonance assignment and three-dimensional structure determination of a human alpha-defensin, HNP-1, by solid-state NMR.
J.Mol.Biol., 397, 2010
7KHK
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BU of 7khk by Molmil
Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX9486 (bezuclastinib) in the DFG-in state
Descriptor: 4,5-dimethyl-N-(2-phenyl-1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazole-3-carboxamide, Mast/stem cell growth factor receptor Kit
Authors:Zhang, Y.
Deposit date:2020-10-21
Release date:2021-07-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Association of Combination of Conformation-Specific KIT Inhibitors With Clinical Benefit in Patients With Refractory Gastrointestinal Stromal Tumors: A Phase 1b/2a Nonrandomized Clinical Trial.
Jama Oncol, 7, 2021
7KHJ
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BU of 7khj by Molmil
Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX8512 in the DFG-in state
Descriptor: 2-phenyl-5-(1H-pyrazol-4-yl)-1H-pyrrolo[2,3-b]pyridine, Mast/stem cell growth factor receptor Kit
Authors:Zhang, Y.
Deposit date:2020-10-21
Release date:2021-07-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Association of Combination of Conformation-Specific KIT Inhibitors With Clinical Benefit in Patients With Refractory Gastrointestinal Stromal Tumors: A Phase 1b/2a Nonrandomized Clinical Trial.
Jama Oncol, 7, 2021
7KHG
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BU of 7khg by Molmil
Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX3397
Descriptor: 5-[(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]-N-{[6-(trifluoromethyl)pyridin-3-yl]methyl}pyridin-2-amine, Mast/stem cell growth factor receptor Kit
Authors:Zhang, Y.
Deposit date:2020-10-21
Release date:2021-07-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Association of Combination of Conformation-Specific KIT Inhibitors With Clinical Benefit in Patients With Refractory Gastrointestinal Stromal Tumors: A Phase 1b/2a Nonrandomized Clinical Trial.
Jama Oncol, 7, 2021
3TG3
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BU of 3tg3 by Molmil
Crystal structure of the MAPK binding domain of MKP7
Descriptor: 1,2-ETHANEDIOL, Dual specificity protein phosphatase 16
Authors:Zhang, Y.Y, Liu, X, Wu, J.W, Wang, Z.X.
Deposit date:2011-08-17
Release date:2012-03-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.675 Å)
Cite:A Distinct Interaction Mode Revealed by the Crystal Structure of the Kinase p38alpha with the MAPK Binding Domain of the Phosphatase MKP5.
Sci.Signal., 4, 2011
3TG1
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BU of 3tg1 by Molmil
Crystal structure of p38alpha in complex with a MAPK docking partner
Descriptor: Dual specificity protein phosphatase 10, Mitogen-activated protein kinase 14
Authors:Zhang, Y.Y, Wu, J.W, Wang, Z.X.
Deposit date:2011-08-17
Release date:2012-03-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:A Distinct Interaction Mode Revealed by the Crystal Structure of the Kinase p38alpha with the MAPK Binding Domain of the Phosphatase MKP5.
Sci.Signal., 4, 2011
3V7T
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BU of 3v7t by Molmil
Crystal Structure of Human Beta-Tryptase Complexed with a Synthetic Inhibitor with a Tropanylamide Scaffold
Descriptor: CARBONATE ION, TPSB2 protein, {(3-exo)-3-[5-(aminomethyl)-2-fluorophenyl]-8-azabicyclo[3.2.1]oct-8-yl}(4-bromo-3-methyl-5-propoxythiophen-2-yl)methanone
Authors:Zhang, Y, Colonna, C, Michot, N.
Deposit date:2011-12-22
Release date:2012-03-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:A beta-tryptase inhibitor with a tropanylamide scaffold to improve in vitro stability and to lower hERG channel binding affinity
Bioorg.Med.Chem.Lett., 22, 2012
7F3L
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BU of 7f3l by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
Descriptor: RNA (5'-R(P*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62
To Be Published
7F3I
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BU of 7f3i by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
Descriptor: RNA (5'-R(*GP*UP*(5MC)P*CP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P212121
To Be Published
7F3K
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BU of 7f3k by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC)P*U)-3'), SULFATE ION, Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P21212
To Be Published
3UUX
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BU of 3uux by Molmil
Crystal structure of yeast Fis1 in complex with Mdv1 fragment containing N-terminal extension and coiled coil domains
Descriptor: Mitochondria fission 1 protein, Mitochondrial division protein 1
Authors:Zhang, Y, Chan, N.C, Gristick, H, Chan, D.C.
Deposit date:2011-11-28
Release date:2012-02-08
Last modified:2012-04-25
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Crystal structure of mitochondrial fission complex reveals scaffolding function for mitochondrial division 1 (mdv1) coiled coil.
J.Biol.Chem., 287, 2012
7F3J
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BU of 7f3j by Molmil
Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
Descriptor: RNA (5'-R(*UP*CP*AP*UP*(5MC))-3'), Y-box-binding protein 2
Authors:Zhang, Y, Huang, Y.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P1
To Be Published
7DR8
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BU of 7dr8 by Molmil
Crystal structure of MERS-CoV 3CL protease in spacegroup P212121
Descriptor: 3C-like proteinase
Authors:Zhang, Y.T, Gao, H.X, Zhou, H, Zhong, F.L, Hu, X.H, Zhou, X.L, Lin, C, Wang, Q.S, Li, J, Zhang, J.
Deposit date:2020-12-26
Release date:2021-12-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.338149 Å)
Cite:Crystal structure of MERS-CoV 3CL protease in spacegroup P212121
To Be Published
7DRA
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BU of 7dra by Molmil
Crystal structure of MERS-CoV 3CL protease (C148A) in spacegroup P212121,pH 9.0
Descriptor: 3C-like proteinase
Authors:Zhang, Y.T, Zhou, X.L, Li, J, Zhang, J.
Deposit date:2020-12-27
Release date:2021-12-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.784097 Å)
Cite:Crystal structure of MERS-CoV 3CL protease (C148A) in spacegroup P212121,pH 9.0
To Be Published

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