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PDB: 631 results

4J0W
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BU of 4j0w by Molmil
Structure of U3-55K
Descriptor: U3 small nucleolar RNA-interacting protein 2
Authors:Zhang, L, Lin, J, Ye, K.
Deposit date:2013-01-31
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and functional analysis of the U3 snoRNA binding protein Rrp9.
Rna, 19, 2013
8I1O
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BU of 8i1o by Molmil
Crystal structure of APSK2 domain from human PAPSS2 in complex with exogenous APS and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-PHOSPHOSULFATE, Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2
Authors:Zhang, L, Song, W.Y, Zhang, L.
Deposit date:2023-01-13
Release date:2023-06-28
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Redox switching mechanism of the adenosine 5'-phosphosulfate kinase domain (APSK2) of human PAPS synthase 2.
Structure, 31, 2023
5H9H
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BU of 5h9h by Molmil
holo acyl carrier protein (holo-ACP) from Helicobacter pylori
Descriptor: Acyl carrier protein
Authors:Zhang, L, Zhang, L, Shen, X, Jiang, H.
Deposit date:2015-12-28
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:holo acyl carrier protein (holo-ACP) from Helicobacter pylori
To Be Published
5H9G
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BU of 5h9g by Molmil
apo-ACP from Helicobacter pylori
Descriptor: Acyl carrier protein
Authors:Zhang, L, Zhang, L, Shen, X, Jiang, H.
Deposit date:2015-12-28
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:apo-ACP from Helicobacter pylori
To Be Published
3B7J
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BU of 3b7j by Molmil
Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) from Helicobacter pylori complexed with juglone
Descriptor: (3R)-hydroxymyristoyl-acyl carrier protein dehydratase, 5-hydroxynaphthalene-1,4-dione, BENZAMIDINE, ...
Authors:Zhang, L, Kong, Y.H, Wu, D, Shen, X, Jiang, H.L.
Deposit date:2007-10-31
Release date:2008-09-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Natural product juglone targets three key enzymes from Helicobacter pylori: inhibition assay with crystal structure characterization
ACTA PHARMACOL.SIN., 29, 2008
8I1M
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BU of 8i1m by Molmil
Crystal structure of oxidated APSK1 domain from human PAPSS1 in complex with APS and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-PHOSPHOSULFATE, PAPSS1 protein, ...
Authors:Zhang, L, Song, W.Y, Zhang, L.
Deposit date:2023-01-13
Release date:2023-06-28
Last modified:2023-07-19
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Redox switching mechanism of the adenosine 5'-phosphosulfate kinase domain (APSK2) of human PAPS synthase 2.
Structure, 31, 2023
8I1N
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BU of 8i1n by Molmil
Crystal structure of APSK2 domain from human PAPSS2 in complex with endogenous APS and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-PHOSPHOSULFATE, Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2
Authors:Zhang, L, Song, W.Y, Zhang, L.
Deposit date:2023-01-13
Release date:2023-06-28
Last modified:2023-07-19
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Redox switching mechanism of the adenosine 5'-phosphosulfate kinase domain (APSK2) of human PAPS synthase 2.
Structure, 31, 2023
7V40
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BU of 7v40 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2
Descriptor: PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, p450tol monooxygenase
Authors:Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2021-08-12
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V41
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Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with toluene.
Descriptor: PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, TOLUENE, ...
Authors:Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2021-08-12
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V44
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BU of 7v44 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with meta-chlorotoluene.
Descriptor: 1-chloranyl-2-methyl-benzene, GLYCEROL, PHOSPHATE ION, ...
Authors:Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2021-08-12
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V43
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BU of 7v43 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with para-chlorotoluene.
Descriptor: 1-chloranyl-4-methyl-benzene, GLYCEROL, PHOSPHATE ION, ...
Authors:Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2021-08-12
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V42
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BU of 7v42 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with benzyl-alcohol.
Descriptor: PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, p450tol monooxygenase, ...
Authors:Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2021-08-12
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V45
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BU of 7v45 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with para-bromotoluene.
Descriptor: 1-bromanyl-4-methyl-benzene, PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2021-08-12
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
7V46
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BU of 7v46 by Molmil
Crystal structure of Class I P450 monooxygenase (P450tol) from Rhodococcus coprophilus TC-2 in complex with ortho-chlorotoluene.
Descriptor: 1-chloranyl-3-methyl-benzene, PHOSPHATE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Zhang, L.L, Huang, J.W, Liu, W.D, Chen, C.C, Guo, R.T.
Deposit date:2021-08-12
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Basis for a Toluene Monooxygenase to Govern Substrate Selectivity
Acs Catalysis, 12, 2022
4NXL
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BU of 4nxl by Molmil
Dibenzothiophene monooxygenase (DszC) from Rhodococcus erythropolis
Descriptor: DszC
Authors:Zhang, L, Duan, X, Li, X, Rao, Z.
Deposit date:2013-12-09
Release date:2014-07-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the stabilization of active, tetrameric DszC by its C-terminus.
Proteins, 82, 2014
6RL0
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BU of 6rl0 by Molmil
Recombinant Pseudomonas stutzeri nitrous oxide reductase, form I
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Zhang, L, Wuest, A, Prasser, B, Mueller, C, Einsle, O.
Deposit date:2019-04-30
Release date:2019-06-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Functional assembly of nitrous oxide reductase provides insights into copper site maturation.
Proc.Natl.Acad.Sci.USA, 116, 2019
8JKK
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BU of 8jkk by Molmil
Crystal Structure of the dioxygenase CcTet from Coprinopsis cinerea bound to 12bp 5-methylcytosine (5mC) containing duplex DNA
Descriptor: 2OGFeDO JBP1/TET oxygenase domain-containing protein, DNA (5'-D(P*CP*GP*AP*TP*CP*(5CM)P*GP*CP*TP*AP*CP*G)-3'), DNA (5'-D(P*CP*GP*TP*AP*GP*CP*TP*GP*AP*TP*CP*G)-3'), ...
Authors:Zhang, L, Zhang, L.
Deposit date:2023-06-01
Release date:2024-03-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular basis of an atypical dsDNA 5mC/6mA bifunctional dioxygenase CcTet from Coprinopsis cinerea in catalyzing dsDNA 5mC demethylation.
Nucleic Acids Res., 52, 2024
8ZAV
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BU of 8zav by Molmil
alcohol dehydrogenases KpADH mutant - S9Y/F161K
Descriptor: 1,2-ETHANEDIOL, NAD-dependent epimerase/dehydratase domain-containing protein, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zhang, L, Ni, Y, Xu, G.C.
Deposit date:2024-04-25
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Engineering alcohol dehydrogenases KpADH for enhanced organic-solvent tolerance and its molecular mechanisms
To Be Published
9C49
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BU of 9c49 by Molmil
Cryo-EM structure of Danio rerio voltage-sensing phosphatase (VSP) phosphatase domain
Descriptor: Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase TPTE2
Authors:Zhang, L, Brohawn, S.G.
Deposit date:2024-06-03
Release date:2024-07-10
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Coupling sensor to enzyme in the voltage sensing phosphatase
To Be Published
8JNK
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BU of 8jnk by Molmil
Crystal structure of human ALKBH3 bound to ssDNA through active site crosslink
Descriptor: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3, DNA, MANGANESE (II) ION, ...
Authors:Zhang, L.
Deposit date:2023-06-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:The Molecular Basis of Human ALKBH3 Mediated RNA N 1 -methyladenosine (m 1 A) Demethylation.
Angew.Chem.Int.Ed.Engl., 63, 2024
8JNR
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BU of 8jnr by Molmil
Crystal structure of human ALKBH3 bound to 3mC containing ssDNA through distal crosslink
Descriptor: Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3, DNA, MANGANESE (II) ION, ...
Authors:Zhang, L.
Deposit date:2023-06-06
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.66 Å)
Cite:The Molecular Basis of Human ALKBH3 Mediated RNA N 1 -methyladenosine (m 1 A) Demethylation.
Angew.Chem.Int.Ed.Engl., 63, 2024
2C9P
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BU of 2c9p by Molmil
Cu(I)Cu(II)-CopC at pH 4.5
Descriptor: COPPER (II) ION, COPPER RESISTANCE PROTEIN C, NITRATE ION
Authors:Zhang, L, Koay, M, Maher, M.J, Xiao, Z, Wedd, A.G.
Deposit date:2005-12-14
Release date:2006-05-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Intermolecular Transfer of Copper Ions from the Copc Protein of Pseudomonas Syringae. Crystal Structures of Fully Loaded Cu(I)Cu(II) Forms.
J.Am.Chem.Soc., 128, 2006
7CLZ
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BU of 7clz by Molmil
Crystal structure of Alp1U W187F/Y247F in complex with fluostatin C
Descriptor: BORIC ACID, D-MALATE, Fluostatin C, ...
Authors:Zhang, L, De, B.C.
Deposit date:2020-07-22
Release date:2020-10-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.10001016 Å)
Cite:Mutation of an atypical oxirane oxyanion hole improves regioselectivity of the alpha / beta-fold epoxide hydrolase Alp1U.
J.Biol.Chem., 295, 2020
8RBM
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BU of 8rbm by Molmil
Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, ferricyanide oxidized
Descriptor: DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Zhang, L, Einsle, O.
Deposit date:2023-12-04
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:Architecture of the RNF1 complex that drives biological nitrogen fixation.
Nat.Chem.Biol., 2024
8RBQ
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BU of 8rbq by Molmil
Cryo-EM structure of the NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii, dithionite reduced
Descriptor: DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Zhang, L, Einsle, O.
Deposit date:2023-12-04
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Architecture of the RNF1 complex that drives biological nitrogen fixation.
Nat.Chem.Biol., 2024

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