Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1643 results

1RBY
DownloadVisualize
BU of 1rby by Molmil
Human GAR Tfase complex structure with 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid and substrate beta-GAR
Descriptor: GLYCINAMIDE RIBONUCLEOTIDE, N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID, PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
Authors:Zhang, Y, Desharnais, J, Boger, D.L, Wilson, I.A.
Deposit date:2003-11-03
Release date:2005-06-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.101 Å)
Cite:Human GAR Tfase complex structure
To be Published
2KHT
DownloadVisualize
BU of 2kht by Molmil
NMR Structure of human alpha defensin HNP-1
Descriptor: Neutrophil defensin 1
Authors:Zhang, Y, Li, S, Doherty, T.F, Lubkowski, J, Lu, W, Li, J, Barinka, C, Hong, M.
Deposit date:2009-04-11
Release date:2010-02-09
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:Resonance assignment and three-dimensional structure determination of a human alpha-defensin, HNP-1, by solid-state NMR.
J.Mol.Biol., 397, 2010
8IHT
DownloadVisualize
BU of 8iht by Molmil
Rpd3S bound to the nucleosome
Descriptor: CALCIUM ION, Chromatin modification-related protein EAF3, DNA (164-MER), ...
Authors:Zhang, Y, Gang, C.
Deposit date:2023-02-23
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (3.72 Å)
Cite:Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
8IHM
DownloadVisualize
BU of 8ihm by Molmil
Eaf3 CHD domain bound to the nucleosome
Descriptor: Chromatin modification-related protein EAF3, DNA (164-MER), DNA (165-MER), ...
Authors:Zhang, Y, Gang, C.
Deposit date:2023-02-23
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
8IHN
DownloadVisualize
BU of 8ihn by Molmil
Cryo-EM structure of the Rpd3S core complex
Descriptor: CALCIUM ION, Chromatin modification-related protein EAF3, Histone H3, ...
Authors:Zhang, Y, Gang, C.
Deposit date:2023-02-23
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
2KNQ
DownloadVisualize
BU of 2knq by Molmil
Solution structure of E.Coli GspH
Descriptor: General secretion pathway protein H
Authors:Zhang, Y, Jin, C.
Deposit date:2009-08-31
Release date:2010-09-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of GspH
To be Published
6JJF
DownloadVisualize
BU of 6jjf by Molmil
Crystal structure of a two-quartet DNA mixed-parallel/antiparallel G-quadruplex
Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*GP*GP*CP*TP*CP*GP*GP*CP*GP*GP*CP*GP*GP*A)-3'), POTASSIUM ION, ...
Authors:Zhang, Y.S, EI Omari, K, Duman, R, Wagner, A, Parkinson, G.N, Wei, D.G.
Deposit date:2019-02-25
Release date:2020-02-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Native de novo structural determinations of non-canonical nucleic acid motifs by X-ray crystallography at long wavelengths.
Nucleic Acids Res., 48, 2020
2LD5
DownloadVisualize
BU of 2ld5 by Molmil
Solution NMR-derived complex structure of Hoxa13 DNA binding domain bound to DNA
Descriptor: DNA (5'-D(*CP*AP*AP*AP*TP*AP*AP*AP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*TP*TP*TP*AP*TP*TP*TP*G)-3'), Homeobox protein Hox-A13
Authors:Zhang, Y.
Deposit date:2011-05-14
Release date:2011-08-10
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for sequence specific DNA binding and protein dimerization of HOXA13.
Plos One, 6, 2011
2LLO
DownloadVisualize
BU of 2llo by Molmil
Solution NMR-derived structure of calmodulin N-lobe bound with ER alpha peptide
Descriptor: CALCIUM ION, Calmodulin, Estrogen receptor
Authors:Zhang, Y.
Deposit date:2011-11-15
Release date:2012-02-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for Ca2+-induced activation and dimerization of estrogen receptor alpha by calmodulin.
J.Biol.Chem., 287, 2012
3LC8
DownloadVisualize
BU of 3lc8 by Molmil
Crystal structure of the cytoplasmic tail of (pro)renin receptor as a MBP fusion (Maltose-free form)
Descriptor: GLYCEROL, MAGNESIUM ION, Maltose-binding periplasmic protein, ...
Authors:Zhang, Y, Garavito, R.M.
Deposit date:2010-01-10
Release date:2011-02-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of the intracellular domain of (pro)renin receptor fused to maltose-binding protein.
Biochem.Biophys.Res.Commun., 407, 2011
2AA0
DownloadVisualize
BU of 2aa0 by Molmil
Crystal structure of T. gondii adenosine kinase complexed with 6-methylmercaptopurine riboside
Descriptor: 2-HYDROXYMETHYL-5-(6-METHYLSULFANYL-PURIN-9-YL)-TETRAHYDRO-FURAN-3,4-DIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Zhang, Y, el Kouni, M.H, Ealick, S.E.
Deposit date:2005-07-13
Release date:2006-07-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Substrate analogs induce an intermediate conformational change in Toxoplasma gondii adenosine kinase
Acta Crystallogr.,Sect.D, 63, 2007
2AB8
DownloadVisualize
BU of 2ab8 by Molmil
Crystal structure of T. gondii adenosine kinase complexed with 6-methylmercaptopurine riboside and AMP-PCP
Descriptor: 2-HYDROXYMETHYL-5-(6-METHYLSULFANYL-PURIN-9-YL)-TETRAHYDRO-FURAN-3,4-DIOL, CHLORIDE ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Zhang, Y, el Kouni, M.H, Ealick, S.E.
Deposit date:2005-07-14
Release date:2006-07-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Substrate analogs induce an intermediate conformational change in Toxoplasma gondii adenosine kinase
Acta Crystallogr.,Sect.D, 63, 2007
1FKC
DownloadVisualize
BU of 1fkc by Molmil
HUMAN PRION PROTEIN (MUTANT E200K) FRAGMENT 90-231
Descriptor: PRION PROTEIN
Authors:Zhang, Y, Swietnicki, W, Zagorski, M.G, Surewicz, W.K, Soennichsen, F.D.
Deposit date:2000-08-09
Release date:2000-09-21
Last modified:2018-03-14
Method:SOLUTION NMR
Cite:Solution structure of the E200K variant of human prion protein. Implications for the mechanism of pathogenesis in familial prion diseases.
J.Biol.Chem., 275, 2000
2ABS
DownloadVisualize
BU of 2abs by Molmil
Crystal structure of T. gondii adenosine kinase complexed with AMP-PCP
Descriptor: CHLORIDE ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, SODIUM ION, ...
Authors:Zhang, Y, el Kouni, M.H, Ealick, S.E.
Deposit date:2005-07-16
Release date:2006-01-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structure of Toxoplasma gondii adenosine kinase in complex with an ATP analog at 1.1 angstroms resolution.
Acta Crystallogr.,Sect.D, 62, 2006
1FO7
DownloadVisualize
BU of 1fo7 by Molmil
HUMAN PRION PROTEIN MUTANT E200K FRAGMENT 90-231
Descriptor: PRION PROTEIN
Authors:Zhang, Y, Swietnicki, W, Zagorski, M.G, Surewicz, W.K, Soennichsen, F.D.
Deposit date:2000-08-25
Release date:2000-09-21
Last modified:2018-03-14
Method:SOLUTION NMR
Cite:Solution structure of the E200K variant of human prion protein. Implications for the mechanism of pathogenesis in familial prion diseases.
J.Biol.Chem., 275, 2000
2PQN
DownloadVisualize
BU of 2pqn by Molmil
Crystal structure of yeast Fis1 complexed with a fragment of yeast Mdv1
Descriptor: Mitochondria fission 1 protein, Mitochondrial division protein 1
Authors:Zhang, Y, Chan, D.C.
Deposit date:2007-05-02
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for recruitment of mitochondrial fission complexes by Fis1.
Proc.Natl.Acad.Sci.USA, 104, 2007
2LLQ
DownloadVisualize
BU of 2llq by Molmil
Solution nmr-derived structure of calmodulin c-lobe bound with er alpha peptide
Descriptor: CALCIUM ION, Calmodulin, Estrogen receptor
Authors:Zhang, Y.
Deposit date:2011-11-15
Release date:2012-02-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for Ca2+-induced activation and dimerization of estrogen receptor alpha by calmodulin.
J.Biol.Chem., 287, 2012
2LRJ
DownloadVisualize
BU of 2lrj by Molmil
NMR solution structure of staphyloxanthin biosynthesis protein
Descriptor: Staphyloxanthin biosynthesis protein, putative
Authors:Zhang, Y, Winsor, J, Anderson, W, Radhakrishnan, I, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-04-03
Release date:2012-04-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of a putative S. aureus enzyme involved in the biosynthesis of staphyloxanthin
To be Published
2LBC
DownloadVisualize
BU of 2lbc by Molmil
solution structure of tandem UBA of USP13
Descriptor: Ubiquitin carboxyl-terminal hydrolase 13
Authors:Zhang, Y, Zhou, C, Zhou, Z, Song, A, Hu, H.
Deposit date:2011-03-29
Release date:2012-03-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Domain Analysis Reveals That a Deubiquitinating Enzyme USP13 Performs Non-Activating Catalysis for Lys63-Linked Polyubiquitin.
Plos One, 6, 2011
3LBS
DownloadVisualize
BU of 3lbs by Molmil
Crystal structure of the cytoplasmic tail of (pro)renin receptor as a MBP fusion (Maltose-bound form)
Descriptor: Maltose-binding periplasmic protein, Renin receptor, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Zhang, Y, Garavito, R.M.
Deposit date:2010-01-08
Release date:2011-02-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural analysis of the intracellular domain of (pro)renin receptor fused to maltose-binding protein.
Biochem.Biophys.Res.Commun., 407, 2011
6LTS
DownloadVisualize
BU of 6lts by Molmil
Crystal structure of Thermus thermophilus transcription initiation complex comprising a truncated sigma finger
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Zhang, Y, Ebright, R.H.
Deposit date:2020-01-23
Release date:2020-03-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription.
Proc.Natl.Acad.Sci.USA, 117, 2020
3TG3
DownloadVisualize
BU of 3tg3 by Molmil
Crystal structure of the MAPK binding domain of MKP7
Descriptor: 1,2-ETHANEDIOL, Dual specificity protein phosphatase 16
Authors:Zhang, Y.Y, Liu, X, Wu, J.W, Wang, Z.X.
Deposit date:2011-08-17
Release date:2012-03-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.675 Å)
Cite:A Distinct Interaction Mode Revealed by the Crystal Structure of the Kinase p38alpha with the MAPK Binding Domain of the Phosphatase MKP5.
Sci.Signal., 4, 2011
3TG1
DownloadVisualize
BU of 3tg1 by Molmil
Crystal structure of p38alpha in complex with a MAPK docking partner
Descriptor: Dual specificity protein phosphatase 10, Mitogen-activated protein kinase 14
Authors:Zhang, Y.Y, Wu, J.W, Wang, Z.X.
Deposit date:2011-08-17
Release date:2012-03-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:A Distinct Interaction Mode Revealed by the Crystal Structure of the Kinase p38alpha with the MAPK Binding Domain of the Phosphatase MKP5.
Sci.Signal., 4, 2011
2PQR
DownloadVisualize
BU of 2pqr by Molmil
Crystal structure of yeast Fis1 complexed with a fragment of yeast Caf4
Descriptor: GOLD ION, Mitochondria fission 1 protein, WD repeat protein YKR036C
Authors:Zhang, Y, Chan, D.C.
Deposit date:2007-05-02
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural basis for recruitment of mitochondrial fission complexes by Fis1.
Proc.Natl.Acad.Sci.USA, 104, 2007
5V21
DownloadVisualize
BU of 5v21 by Molmil
Crystal structure of human SETD2 SET-domain in complex with H3K36M peptide and SAM
Descriptor: Histone H3K36M peptide, Histone-lysine N-methyltransferase SETD2, S-ADENOSYLMETHIONINE, ...
Authors:Zhang, Y, Tong, L.
Deposit date:2017-03-02
Release date:2017-03-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.415 Å)
Cite:Molecular basis for the role of oncogenic histone mutations in modulating H3K36 methylation.
Sci Rep, 7, 2017

221371

数据于2024-06-19公开中

PDB statisticsPDBj update infoContact PDBjnumon