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PDB: 50 results

1SL3
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crystal structue of Thrombin in complex with a potent P1 heterocycle-Aryl based inhibitor
Descriptor: (2-[6-CHLORO-3-{[2,2-DIFLUORO-2-(1-OXIDOPYRIDIN-2-YL)ETHYL]AMINO}-2-OXOPYRAZIN-1(2H)-YL]-N-[5-CHLORO-2-(1H-TETRAZOL-1-YL)BENZYL]ACETAMIDE, Hirudin, thrombin
Authors:Young, M.B, Barrow, J.C, Glass, K.L, Lundell, G.F, Newton, C.L, Pellicore, J.M, Rittle, K.E, Selnick, H.G, Stauffer, K.J, Vacca, J.P, Williams, P.D, Bohn, D, Clayton, F.C, Cook, J.J, Krueger, J.A, Kuo, L.C, Lewis, S.D, Lucas, B.J, McMasters, D.R, Miller-Stein, C, Pietrak, B.L.
Deposit date:2004-03-05
Release date:2004-08-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Discovery and evaluation of potent P1 aryl heterocycle-based thrombin inhibitors
J.Med.Chem., 47, 2004
3QHR
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Structure of a pCDK2/CyclinA transition-state mimic
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CDK2 substrate peptide: PKTPKKAKKL, CHLORIDE ION, ...
Authors:Young, M.A, Jacobsen, D.M, Bao, Z.Q.
Deposit date:2011-01-26
Release date:2011-05-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Briefly Bound to Activate: Transient Binding of a Second Catalytic Magnesium Activates the Structure and Dynamics of CDK2 Kinase for Catalysis.
Structure, 19, 2011
3QHW
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Structure of a pCDK2/CyclinA transition-state mimic
Descriptor: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, CDK2 substrate peptide: PKTPKKAKKL, ...
Authors:Young, M.A, Jacobsen, D.M, Bao, Z.Q.
Deposit date:2011-01-26
Release date:2011-05-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Briefly Bound to Activate: Transient Binding of a Second Catalytic Magnesium Activates the Structure and Dynamics of CDK2 Kinase for Catalysis.
Structure, 19, 2011
2F4J
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BU of 2f4j by Molmil
Structure of the Kinase Domain of an Imatinib-Resistant Abl Mutant in Complex with the Aurora Kinase Inhibitor VX-680
Descriptor: CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE, Proto-oncogene tyrosine-protein kinase ABL1
Authors:Young, M.A, Shah, N.P, Chao, L.H, Zarrinkar, P, Sawyers, P, Kuriyan, J.
Deposit date:2005-11-23
Release date:2006-01-24
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structure of the kinase domain of an imatinib-resistant Abl mutant in complex with the Aurora kinase inhibitor VX-680.
Cancer Res., 66, 2006
3UBR
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BU of 3ubr by Molmil
Laue structure of Shewanella oneidensis cytochrome-c Nitrite Reductase
Descriptor: CALCIUM ION, Cytochrome c-552, HEME C
Authors:Youngblut, M, Judd, E.T, Srajer, V, Sayed, B, Goeltzner, T, Elliott, S, Schmidt, M, Pacheco, A.
Deposit date:2011-10-24
Release date:2012-04-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Laue crystal structure of Shewanella oneidensis cytochrome c nitrite reductase from a high-yield expression system.
J.Biol.Inorg.Chem., 17, 2012
4R2H
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BU of 4r2h by Molmil
The Crystal Structure of B204, the DNA-packaging ATPase from Sulfolobus Turreted Icosahedral Virus
Descriptor: STIV B204 ATPase, ZINC ION
Authors:Dellas, N, Nicolay, S.J, Young, M.J.
Deposit date:2014-08-12
Release date:2016-01-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase.
J.Virol., 90, 2015
2C0N
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BU of 2c0n by Molmil
Crystal Structure of A197 from STIV
Descriptor: 1,4-DIETHYLENE DIOXIDE, A197, NICKEL (II) ION, ...
Authors:Larson, E.T, Reiter, D, Young, M, Lawrence, C.M.
Deposit date:2005-09-06
Release date:2005-09-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structure of A197 from Sulfolobus Turreted Icosahedral Virus: A Crenarchaeal Viral Glycosyltransferase Exhibiting the Gt-A Fold.
J.Virol., 80, 2006
4GU5
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BU of 4gu5 by Molmil
Structure of Full-length Drosophila Cryptochrome
Descriptor: Cryptochrome-1, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION
Authors:Zoltowski, B.D, Vaidya, A.T, Top, D, Widom, J, Young, M.W, Levy, C, Jones, A.R, Scrutton, N.S, Leys, D, Crane, B.R.
Deposit date:2012-08-29
Release date:2012-09-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Updated structure of Drosophila cryptochrome.
Nature, 495, 2013
3UXU
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The structure of the catalytic domain of the Sulfolobus Spindle-shaped viral integrase reveals an evolutionarily conserved catalytic core and supports a mechanism of DNA cleavage in trans
Descriptor: PHOSPHATE ION, Probable integrase
Authors:Eilers, B.J, Young, M.J, Lawrence, C.M.
Deposit date:2011-12-05
Release date:2012-05-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.706 Å)
Cite:The Structure of an Archaeal Viral Integrase Reveals an Evolutionarily Conserved Catalytic Core yet Supports a Mechanism of DNA Cleavage in trans.
J.Virol., 86, 2012
8SBK
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BU of 8sbk by Molmil
Structure of HLA-A*24:02 in complex with peptide, LYLPVRVLI (ATG2A).
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, LEU-TYR-LEU-PRO-VAL-ARG-VAL-LEU-ILE, ...
Authors:Mallik, L, Young, M.C, Sgourakis, N.G.
Deposit date:2023-04-03
Release date:2023-12-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural principles of peptide-centric chimeric antigen receptor recognition guide therapeutic expansion.
Sci Immunol, 8, 2023
8SBL
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Structure of HLA-A*24:02 in complex with peptide, LYLPVRVLI
Descriptor: Beta-2-microglobulin, LEU-TYR-LEU-PRO-VAL-ARG-VAL-LEU-ILE, MHC class I antigen
Authors:Mallik, L, Young, M.C, Sgourakis, N.G.
Deposit date:2023-04-03
Release date:2023-12-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural principles of peptide-centric chimeric antigen receptor recognition guide therapeutic expansion.
Sci Immunol, 8, 2023
4I3Z
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BU of 4i3z by Molmil
Structure of pCDK2/CyclinA bound to ADP and 2 Magnesium ions
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, Cyclin-A2, ...
Authors:Jacobsen, D.M, Bao, Z.-Q, O'Brien, P.J, Brooks, C.L, Young, M.A.
Deposit date:2012-11-27
Release date:2012-12-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Price To Be Paid for Two-Metal Catalysis: Magnesium Ions That Accelerate Chemistry Unavoidably Limit Product Release from a Protein Kinase
J.Am.Chem.Soc., 134, 2012
2CLB
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BU of 2clb by Molmil
The structure of the DPS-like protein from Sulfolobus solfataricus reveals a bacterioferritin-like di-metal binding site within a Dps- like dodecameric assembly
Descriptor: DPS-LIKE PROTEIN, FE (III) ION, ZINC ION
Authors:Gauss, G.H, Benas, P, Wiedenheft, B, Young, M, Douglas, T, Lawrence, C.M.
Deposit date:2006-04-26
Release date:2006-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Dps-Like Protein from Sulfolobus Solfataricus Reveals a Bacterioferritin-Like Dimetal Binding Site within a Dps-Like Dodecameric Assembly.
Biochemistry, 45, 2006
6GYN
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BU of 6gyn by Molmil
Structure of human HCN4 hyperpolarization-activated cyclic nucleotide-gated ion channel
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
Authors:Shintre, C.A, Pike, A.C.W, Tessitore, A, Young, M, Bushell, S.R, Strain-Damerell, C, Mukhopadhyay, S, Burgess-Brown, N.A, Huiskonen, J.T, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Carpenter, E.P, Structural Genomics Consortium (SGC)
Deposit date:2018-06-30
Release date:2019-05-08
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of human HCN4 hyperpolarization-activated cyclic nucleotide-gated ion channel
To Be Published
6GYO
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BU of 6gyo by Molmil
Structure of human HCN4 hyperpolarization-activated cyclic nucleotide-gated ion channel in complex with cAMP
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOINOSITOL, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ...
Authors:Shintre, C.A, Pike, A.C.W, Tessitore, A, Young, M, Bushell, S.R, Strain-Damerell, C, Mukhopadhyay, S, Burgess-Brown, N.A, Huiskonen, J.T, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Carpenter, E.P, Structural Genomics Consortium (SGC)
Deposit date:2018-06-30
Release date:2019-05-01
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of human HCN4 hyperpolarization-activated cyclic nucleotide-gated ion channel
To Be Published
5EQW
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BU of 5eqw by Molmil
Structure of the major structural protein D135 of Acidianus tailed spindle virus (ATSV)
Descriptor: NITRATE ION, Putative major coat protein
Authors:Hochstein, R.A, Lintner, N.G, Young, M.J, Lawrence, C.M.
Deposit date:2015-11-13
Release date:2016-11-16
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (1.679 Å)
Cite:Structural studies ofAcidianustailed spindle virus reveal a structural paradigm used in the assembly of spindle-shaped viruses.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1ZA7
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BU of 1za7 by Molmil
The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution.
Descriptor: Coat protein
Authors:Bothner, B, Speir, J.A, Qu, C, Willits, D.A, Young, M.J, Johnson, J.E.
Deposit date:2005-04-05
Release date:2006-03-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Enhanced local symmetry interactions globally stabilize a mutant virus capsid that maintains infectivity and capsid dynamics.
J.Virol., 80, 2006
3J31
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BU of 3j31 by Molmil
Life in the extremes: atomic structure of Sulfolobus Turreted Icosahedral Virus
Descriptor: A223 penton base, A55 membrane protein, C381 turret protein, ...
Authors:Veesler, D, Ng, T.S, Sendamarai, A.K, Eilers, B.J, Lawrence, C.M, Lok, S.M, Young, M.J, Johnson, J.E, Fu, C.-Y.
Deposit date:2013-02-18
Release date:2013-05-01
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Atomic structure of the 75 MDa extremophile Sulfolobus turreted icosahedral virus determined by CryoEM and X-ray crystallography.
Proc.Natl.Acad.Sci.USA, 110, 2013
3K9L
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BU of 3k9l by Molmil
Allosteric modulation of H-Ras GTPase
Descriptor: CALCIUM ION, GTPase HRas, MAGNESIUM ION, ...
Authors:Fetics, S, Young, M, Buhrman, G, Mattos, C.
Deposit date:2009-10-15
Release date:2010-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Allosteric modulation of H-Ras GTPase
To be Published
1JQJ
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BU of 1jqj by Molmil
Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex
Descriptor: DNA polymerase III, beta chain, delta subunit
Authors:Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J.
Deposit date:2001-08-07
Release date:2001-11-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 106, 2001
1JQL
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Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140)
Descriptor: DNA Polymerase III, BETA CHAIN, DELTA SUBUNIT
Authors:Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J.
Deposit date:2001-08-07
Release date:2001-09-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 106, 2001
1TBX
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BU of 1tbx by Molmil
Crystal structure of SSV1 F-93
Descriptor: Hypothetical 11.0 kDa protein
Authors:Kraft, P, Oeckinghaus, A, Kummel, D, Gauss, G.H, Wiedenheft, B, Young, M, Lawrence, C.M.
Deposit date:2004-05-20
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of F-93 from Sulfolobus spindle-shaped virus 1, a winged-helix DNA binding protein.
J.Virol., 78, 2004
1SKV
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BU of 1skv by Molmil
Crystal Structure of D-63 from Sulfolobus Spindle Virus 1
Descriptor: Hypothetical 7.5 kDa protein
Authors:Kraft, P, Kummel, D, Oeckinghaus, A, Gauss, G.H, Wiedenheft, B, Young, M, Lawrence, C.M.
Deposit date:2004-03-05
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of d-63 from sulfolobus spindle-shaped virus 1: surface properties of the dimeric four-helix bundle suggest an adaptor protein function
J.Virol., 78, 2004
3PS0
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BU of 3ps0 by Molmil
The structure of the CRISPR-associated protein, csa2, from Sulfolobus solfataricus
Descriptor: CRISPR-Associated protein, CSA2
Authors:Lintner, N.G, Sdano, M, Young, M.J, Lawrence, C.M.
Deposit date:2010-11-30
Release date:2011-04-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE).
J.Biol.Chem., 286, 2011
3RKL
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The crystal structure of A81 from Sulfolobus Turreted Icosahedral Virus
Descriptor: ACETATE ION, STIV-A81
Authors:Lintner, N.G, Larson, E.T, Young, M.J, Lawrence, C.M.
Deposit date:2011-04-18
Release date:2012-05-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The crystal structure of A81 from Sulfolobus Turreted Icosahedral Virus
To be Published

 

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