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PDB: 102 results

6LQU
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BU of 6lqu by Molmil
Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)
Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S pre-rRNA, 40S ribosomal protein S11-A, ...
Authors:Du, Y, Ye, K.
Deposit date:2020-01-14
Release date:2020-09-16
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Science, 369, 2020
6LZ1
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BU of 6lz1 by Molmil
Structure of S.pombe alpha-mannosidase Ams1
Descriptor: Ams1, ZINC ION
Authors:Zhang, J, Ye, K.
Deposit date:2020-02-17
Release date:2020-09-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of fission yeast tetrameric alpha-mannosidase Ams1.
Febs Open Bio, 10, 2020
4M5D
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BU of 4m5d by Molmil
Crystal structure of the Utp22 and Rrp7 complex from Saccharomyces cerevisiae
Descriptor: Ribosomal RNA-processing protein 7, SULFATE ION, TRIETHYLENE GLYCOL, ...
Authors:Lin, J, Ye, K.
Deposit date:2013-08-08
Release date:2013-11-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:An RNA-Binding Complex Involved in Ribosome Biogenesis Contains a Protein with Homology to tRNA CCA-Adding Enzyme.
Plos Biol., 11, 2013
4MJ7
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BU of 4mj7 by Molmil
Crystal structure of the PIN domain of Saccharomyces cerevisiae Utp23
Descriptor: ZINC ION, rRNA-processing protein UTP23
Authors:Lu, J, Ye, K.
Deposit date:2013-09-03
Release date:2013-11-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural and functional analysis of Utp23, a yeast ribosome synthesis factor with degenerate PIN domain
Rna, 19, 2013
5GIN
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BU of 5gin by Molmil
Crystal structure of box C/D RNP with 12 nt guide regions and 9 nt substrates
Descriptor: 50S ribosomal protein L7Ae, C/D RNA, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit, ...
Authors:Yang, Z, Lin, J, Ye, K.
Deposit date:2016-06-24
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.308 Å)
Cite:Box C/D guide RNAs recognize a maximum of 10 nt of substrates
Proc.Natl.Acad.Sci.USA, 113, 2016
5YAX
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BU of 5yax by Molmil
Crystal structure of a human neutralizing antibody bound to a HBV preS1 peptide
Descriptor: Large envelope protein, SODIUM ION, scFv1 antibody
Authors:Liu, X, Zheng, S, Ye, K, Sui, J.
Deposit date:2017-09-02
Release date:2017-10-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A potent human neutralizing antibody Fc-dependently reduces established HBV infections
Elife, 6, 2017
4WNZ
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BU of 4wnz by Molmil
Crystal structure of Pyrococcus furiosus Cmr4 (Cas7)
Descriptor: CRISPR system Cmr subunit Cmr4
Authors:Zhu, X, Ye, K.
Deposit date:2014-10-15
Release date:2015-01-14
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Cmr4 is the slicer in the RNA-targeting Cmr CRISPR complex
Nucleic Acids Res., 43, 2015
5ICA
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BU of 5ica by Molmil
Structure of the CTD complex of UTP12, Utp13, Utp1 and Utp21
Descriptor: Periodic tryptophan protein 2-like protein, Putative U3 snoRNP protein, Putative uncharacterized protein
Authors:Zhang, C, Ye, K.
Deposit date:2016-02-23
Release date:2016-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.507 Å)
Cite:Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits
Nucleic Acids Res., 44, 2016
5IC7
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BU of 5ic7 by Molmil
Structure of the WD domain of UTP18
Descriptor: Putative uncharacterized protein, SULFATE ION
Authors:Zhang, C, Ye, K.
Deposit date:2016-02-22
Release date:2016-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.331 Å)
Cite:Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits
Nucleic Acids Res., 44, 2016
5IC9
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BU of 5ic9 by Molmil
Structure of the CTD complex of Utp12 and Utp13
Descriptor: Putative uncharacterized protein
Authors:Zhang, C, Ye, K.
Deposit date:2016-02-23
Release date:2016-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits
Nucleic Acids Res., 44, 2016
5IC8
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BU of 5ic8 by Molmil
Structure of UTP6
Descriptor: Putative uncharacterized protein
Authors:Zhang, C, Ye, K.
Deposit date:2016-02-23
Release date:2016-07-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits
Nucleic Acids Res., 44, 2016
4J0X
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BU of 4j0x by Molmil
Structure of Rrp9
Descriptor: Ribosomal RNA-processing protein 9
Authors:Zhang, L, Lin, J, Ye, K.
Deposit date:2013-01-31
Release date:2013-06-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structural and functional analysis of the U3 snoRNA binding protein Rrp9.
Rna, 19, 2013
4J0W
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BU of 4j0w by Molmil
Structure of U3-55K
Descriptor: U3 small nucleolar RNA-interacting protein 2
Authors:Zhang, L, Lin, J, Ye, K.
Deposit date:2013-01-31
Release date:2013-06-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and functional analysis of the U3 snoRNA binding protein Rrp9.
Rna, 19, 2013
4DIX
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BU of 4dix by Molmil
Crystal structure of the Ig-PH domain of actin-binding protein SCAB1
Descriptor: MALONATE ION, Plectin-related protein
Authors:Zhang, W, Ye, K.
Deposit date:2012-02-01
Release date:2012-02-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Plant actin-binding protein SCAB1 is dimeric actin cross-linker with atypical pleckstrin homology domain
J.Biol.Chem., 287, 2012
4ZLK
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BU of 4zlk by Molmil
Crystal structure of mouse myosin-5a in complex with calcium-bound calmodulin
Descriptor: CALCIUM ION, Calmodulin, Unconventional myosin-Va
Authors:Shen, M, Zhang, N, Zheng, S, Zhang, W.-B, Zhang, H.-M, Lu, Z, Su, Q.P, Sun, Y, Ye, K, Li, X.-D.
Deposit date:2015-05-01
Release date:2016-05-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structural basis for calcium regulation of myosin 5 motor function
To Be Published
4DJG
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BU of 4djg by Molmil
Crystal structure of the coiled-coil 1 domain of actin-binding protein SCAB1
Descriptor: Plectin-related protein
Authors:Zhang, W, Ye, K.
Deposit date:2012-02-01
Release date:2012-02-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Plant actin-binding protein SCAB1 is dimeric actin cross-linker with atypical pleckstrin homology domain
J.Biol.Chem., 287, 2012
4DOZ
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BU of 4doz by Molmil
Crystal structure of Pyrococcus furiosus Cmr2 (Cas10)
Descriptor: Putative uncharacterized protein, ZINC ION
Authors:Zhu, X, Ye, K.
Deposit date:2012-02-12
Release date:2012-03-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of Cmr2 suggests a nucleotide cyclase-related enzyme in type III CRISPR-Cas systems
Febs Lett., 586, 2012
1I5T
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BU of 1i5t by Molmil
SOLUTION STRUCTURE OF CYANOFERRICYTOCHROME C
Descriptor: CYANIDE ION, CYTOCHROME C, HEME C
Authors:Yao, Y, Qian, C, Ye, K, Wang, J, Tang, W.
Deposit date:2001-02-28
Release date:2001-03-21
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:Solution structure of cyanoferricytochrome c: ligand-controlled conformational flexibility and electronic structure of the heme moiety.
J.Biol.Inorg.Chem., 7, 2002
9JA6
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BU of 9ja6 by Molmil
Cryo-EM structure of Tdk1 tetramer complex
Descriptor: Meiotically up-regulated gene 135 protein,Immunoglobulin G-binding protein G
Authors:Zhang, J, Ye, K.
Deposit date:2024-08-24
Release date:2024-11-13
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural duality enables a single protein to act as a toxin-antidote pair for meiotic drive.
Proc.Natl.Acad.Sci.USA, 121, 2024
9JA5
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BU of 9ja5 by Molmil
Cryo-EM structure of Tdk1-Bdf1 complex
Descriptor: Meiotically up-regulated gene 135 protein,SWR1 complex bromodomain subunit bdf1,Immunoglobulin G-binding protein G
Authors:Zhang, J, Ye, K.
Deposit date:2024-08-24
Release date:2024-11-13
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:A meiotic driver hijacks an epigenetic reader to disrupt mitosis in noncarrier offspring.
Proc.Natl.Acad.Sci.USA, 121, 2024
4QMF
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BU of 4qmf by Molmil
Structure of the Krr1 and Faf1 complex from Saccharomyces cerevisiae
Descriptor: KRR1 small subunit processome component, Protein FAF1
Authors:Zheng, S, Ye, K.
Deposit date:2014-06-16
Release date:2014-07-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast
J.Biol.Chem., 289, 2014
4RKG
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BU of 4rkg by Molmil
Structure of the MSL2 CXC domain bound with a non-specific (GC)6 DNA
Descriptor: DNA (5'-D(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'), E3 ubiquitin-protein ligase msl-2, ZINC ION
Authors:Zheng, S, Ye, K.
Deposit date:2014-10-13
Release date:2015-01-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation.
Genes Dev., 28, 2014
2LUA
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BU of 2lua by Molmil
Solution structure of CXC domain of MSL2
Descriptor: Protein male-specific lethal-2, ZINC ION
Authors:Feng, Y, Ye, K, Zheng, S, Wang, J.
Deposit date:2012-06-09
Release date:2012-10-17
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of MSL2 CXC Domain Reveals an Unusual Zn(3)Cys(9) Cluster and Similarity to Pre-SET Domains of Histone Lysine Methyltransferases.
Plos One, 7, 2012
2MBY
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BU of 2mby by Molmil
NMR Structure of Rrp7 C-terminal Domain
Descriptor: Ribosomal RNA-processing protein 7
Authors:Lin, J, Feng, Y, Ye, K.
Deposit date:2013-08-08
Release date:2013-09-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:An RNA-Binding Complex Involved in Ribosome Biogenesis Contains a Protein with Homology to tRNA CCA-Adding Enzyme.
Plos Biol., 11, 2013
5WYL
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BU of 5wyl by Molmil
Crystal structure of Chaetomium thermophilum Utp10 N-terminal domain in complex with Utp17 C-terminal helices
Descriptor: Putative uncharacterized protein
Authors:Chen, R, Zhu, X, Ye, K.
Deposit date:2017-01-13
Release date:2017-06-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.638 Å)
Cite:Molecular architecture of the 90S small subunit pre-ribosome
Elife, 6, 2017

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